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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PTMS is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
272.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
1099.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
1064.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
774.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
762.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
752.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
730.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
720.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
711.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
670.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
636.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
617.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
615.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
611.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
610.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
601.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
596.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
588.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
573.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
567.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
560.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
548.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
545.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
537.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
521.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
500.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
499.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
490.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
480.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
479.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
475.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
471.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
466.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
462.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
458.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
447.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
447.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
446.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
446.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
445.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
445.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
437.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
436.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
430.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
421.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
420.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
420.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
414.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
407.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
400.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
398.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
398.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
398.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
396.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
394.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
392.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
390.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
388.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
386.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
385.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
385.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
383.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
381.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
377.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
377.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
374.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
372.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
365.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
364.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
363.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
362.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
362.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
361.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
360.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
359.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
357.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
355.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
344.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
343.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
342.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
341.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
340.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
340.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
339.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
339.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
339.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
335.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
334.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
333.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
332.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
332.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
330.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
329.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
328.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
327.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
326.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
324.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
324.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
324.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
323.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
321.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
320.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
318.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
318.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
318.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
318.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
318.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
318.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
317.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
309.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
309.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
308.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
307.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
306.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
305.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
303.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
299.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
299.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
299.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
298.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
298.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
298.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
294.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
294.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
294.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
293.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
293.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
292.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
290.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
288.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
287.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
286.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
284.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
283.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
282.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
282.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
281.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
281.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
279.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
277.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
277.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
276.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
275.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
275.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
274.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
274.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
273.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
272.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
272.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
271.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
269.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
269.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
268.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
267.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
267.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
267.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
265.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
264.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
263.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
263.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
263.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
260.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
259.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
258.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
257.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
256.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
256.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
255.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
255.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
255.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
253.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
253.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
252.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
252.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
252.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
251.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
251.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
250.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
250.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
250.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
249.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
247.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
245.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
244.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
243.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
241.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
241.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
241.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
238.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
237.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
236.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
235.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
232.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
231.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
231.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
230.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
230.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
228.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
228.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
227.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
227.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
226.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
226.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
226.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
225.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
224.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
223.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
223.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
222.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
221.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
221.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
219.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
217.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
216.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
216.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
215.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
215.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
215.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
215.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
215.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
214.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
213.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
213.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
212.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
212.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
211.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
211.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
211.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
211.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
210.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
209.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
208.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
207.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
206.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
206.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
206.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
205.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
202.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
202.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
201.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
201.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
200.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
200.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
199.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
198.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
194.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
192.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
192.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
191.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
191.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
191.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
190.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
190.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
189.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
185.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
185.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
184.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
184.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
184.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
183.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
182.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
181.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
181.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
181.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
180.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
179.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
178.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
178.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
177.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
176.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
176.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
175.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
174.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
173.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
173.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
172.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
171.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
169.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
168.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
167.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
166.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
166.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
166.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
165.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
165.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
163.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
162.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
161.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
161.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
160.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
160.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
159.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
158.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
155.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
153.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
153.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
153.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
151.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
151.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
150.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
150.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
150.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
149.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
148.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
147.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
147.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
147.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
146.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
146.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
145.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
144.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
143.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
143.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
142.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
141.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
140.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
139.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
138.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
138.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
137.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
136.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
136.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
134.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
133.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
132.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
131.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
129.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
129.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
128.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
127.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
127.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
123.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
121.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
120.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
119.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
118.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
118.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
115.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
115.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
114.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
113.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
104.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
103.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
102.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
99.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
97.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
96.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
96.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
93.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
93.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
92.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
91.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
86.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
85.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
77.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
70.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
69.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
64.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
52.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
48.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
47.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
45.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PTMS is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
331.4
Number of samples
231
Samples
Sample
Description
TPM
DO45107
0 years, female, NA, stage:2, alive, 1710 days
1063.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
919.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
802.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
701.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
692.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
677.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
659.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
659.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
657.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
636.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
635.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
632.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
626.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
613.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
612.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
594.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
592.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
579.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
576.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
563.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
558.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
554.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
546.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
532.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
529.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
528.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
523.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
523.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
516.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
516.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
513.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
511.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
505.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
502.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
496.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
491.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
480.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
479.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
479.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
468.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
463.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
461.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
459.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
455.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
454.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
448.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
446.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
442.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
440.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
439.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
438.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
438.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
438.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
432.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
425.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
423.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
422.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
420.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
416.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
414.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
408.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
408.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
406.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
404.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
402.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
400.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
399.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
399.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
397.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
395.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
393.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
393.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
389.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
385.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
380.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
376.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
376.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
374.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
374.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
369.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
367.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
366.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
364.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
364.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
363.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
363.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
363.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
361.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
360.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
351.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
351.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
351.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
347.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
346.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
343.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
343.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
342.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
340.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
337.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
335.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
333.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
332.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
325.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
323.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
322.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
320.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
319.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
319.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
318.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
318.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
315.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
315.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
313.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
312.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
310.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
310.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
308.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
308.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
306.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
305.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
302.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
300.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
299.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
297.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
295.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
295.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
288.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
287.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
285.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
284.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
280.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
280.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
278.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
278.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
271.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
269.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
269.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
268.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
264.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
263.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
262.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
260.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
256.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
255.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
254.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
254.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
252.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
251.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
249.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
249.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
244.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
244.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
243.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
243.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
243.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
238.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
237.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
237.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
234.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
232.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
231.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
230.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
230.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
227.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
226.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
226.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
224.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
221.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
218.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
218.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
214.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
213.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
211.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
210.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
210.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
208.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
208.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
205.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
203.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
203.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
201.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
200.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
197.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
197.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
196.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
195.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
195.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
194.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
189.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
187.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
184.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
182.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
180.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
177.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
174.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
173.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
171.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
170.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
169.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
166.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
163.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
162.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
162.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
161.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
160.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
159.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
150.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
150.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
146.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
144.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
141.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
141.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
139.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
138.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
138.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
135.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
135.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
130.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
127.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
127.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
125.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
119.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
116.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
116.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
114.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
109.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
109.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
108.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
106.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
105.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
84.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
513
Tumor
1.5
695
Tumor
1.5
1014
Normal
1.3
484
Normal
1.2
698
Normal
1.1
984
Normal
1.0
411
Tumor
1.0
938
Normal
0.9
982
Normal
0.9
714
Normal
0.9
955
Tumor
0.9
488
Normal
0.9
1046
Normal
0.9
356
Normal
0.8
1026
Normal
0.8
534
Normal
0.8
862
Normal
0.8
944
Normal
0.8
518
Normal
0.8
937
Tumor
0.8
1032
Normal
0.8
465
Tumor
0.8
882
Normal
0.7
912
Normal
0.7
546
Normal
0.7
858
Normal
0.7
448
Normal
0.7
412
Normal
0.7
554
Normal
0.7
723
Tumor
0.7
954
Normal
0.7
926
Normal
0.7
756
Normal
0.7
423
Tumor
0.7
878
Normal
0.7
824
Normal
0.7
778
Normal
0.7
1016
Normal
0.7
355
Tumor
0.7
482
Normal
0.7
1022
Normal
0.7
978
Normal
0.6
528
Normal
0.6
785
Tumor
0.6
964
Normal
0.6
924
Normal
0.6
922
Normal
0.6
472
Normal
0.6
514
Normal
0.6
737
Tumor
0.6
481
Tumor
0.6
516
Normal
0.6
981
Tumor
0.6
696
Normal
0.6
342
Normal
0.6
716
Normal
0.6
1044
Normal
0.6
884
Normal
0.6
958
Normal
0.6
1045
Tumor
0.5
376
Normal
0.5
965
Tumor
0.5
742
Normal
0.5
568
Normal
0.5
744
Normal
0.5
298
Normal
0.5
664
Normal
0.5
364
Normal
0.5
746
Normal
0.5
786
Normal
0.5
515
Tumor
0.5
686
Normal
0.5
738
Normal
0.5
462
Normal
0.5
1013
Tumor
0.5
777
Tumor
0.5
526
Normal
0.5
728
Normal
0.5
868
Normal
0.5
1028
Normal
0.5
864
Normal
0.5
722
Normal
0.5
866
Normal
0.5
968
Normal
0.5
328
Normal
0.5
498
Normal
0.5
477
Tumor
0.5
494
Normal
0.5
572
Normal
0.5
818
Normal
0.4
186
Normal
0.4
196
Normal
0.4
344
Normal
0.4
616
Normal
0.4
952
Normal
0.4
162
Normal
0.4
327
Tumor
0.4
918
Normal
0.4
222
Normal
0.4
394
Normal
0.4
148
Normal
0.4
286
Normal
0.4
648
Normal
0.4
618
Normal
0.4
332
Normal
0.4
415
Tumor
0.4
416
Normal
0.4
365
Tumor
0.4
956
Normal
0.4
366
Normal
0.4
628
Normal
0.4
436
Normal
0.3
212
Normal
0.3
314
Normal
0.3
672
Normal
0.3
915
Tumor
0.3
914
Normal
0.3
966
Normal
0.3
426
Normal
0.3
524
Normal
0.3
911
Tumor
0.3
172
Normal
0.3
1042
Normal
0.3
564
Normal
0.3
666
Normal
0.3
464
Normal
0.3
352
Normal
0.3
976
Normal
0.3
636
Normal
0.3
396
Normal
0.3
358
Normal
0.3
466
Normal
0.3
428
Normal
0.3
456
Normal
0.3
388
Normal
0.3
414
Normal
0.3
536
Normal
0.2
474
Normal
0.2
368
Normal
0.2
662
Normal
0.2
132
Normal
0.2
483
Tumor
0.2
114
Normal
0.2
228
Normal
0.2
432
Normal
0.2
571
Tumor
0.2
392
Normal
0.2
865
Tumor
0.2
111
Normal
0.2
267
Tumor
0.2
435
Tumor
0.2
478
Normal
0.2
218
Normal
0.2
647
Tumor
0.2
558
Normal
0.2
136
Normal
0.2
214
Normal
0.2
523
Tumor
0.2
128
Normal
0.2
258
Normal
0.2
963
Tumor
0.2
354
Normal
0.2
642
Normal
0.2
362
Normal
0.1
452
Normal
0.1
741
Tumor
0.1
422
Normal
0.1
433
Tumor
0.1
816
Normal
0.1
361
Tumor
0.1
137
Tumor
0.1
874
Normal
0.1
468
Normal
0.1
574
Normal
0.1
727
Tumor
0.1
278
Normal
0.1
615
Tumor
0.1
384
Normal
0.1
873
Tumor
0.1
538
Normal
0.1
424
Normal
0.1
261
Tumor
0.1
386
Normal
0.1
277
Tumor
0.1
473
Tumor
0.1
341
Tumor
0.1
142
Normal
0.1
1043
Tumor
0.1
916
Normal
0.1
232
Normal
0.1
492
Normal
0.1
983
Tumor
0.1
852
Normal
0.1
127
Tumor
0.1
446
Normal
0.1
146
Normal
0.1
431
Tumor
0.1
284
Normal
0.0
312
Normal
0.0
977
Tumor
0.0
721
Tumor
0.0
487
Tumor
0.0
1025
Tumor
0.0
461
Tumor
0.0
851
Tumor
0.0
285
Tumor
0.0
867
Tumor
0.0
223
Tumor
0.0
138
Normal
0.0
497
Tumor
0.0
272
Normal
0.0
1015
Tumor
-0.1
224
Normal
-0.1
975
Tumor
-0.1
755
Tumor
-0.1
112
Tumor
-0.1
715
Tumor
-0.1
877
Tumor
-0.1
434
Normal
-0.1
967
Tumor
-0.1
493
Tumor
-0.1
126
Normal
-0.1
147
Tumor
-0.1
957
Tumor
-0.2
861
Tumor
-0.2
923
Tumor
-0.2
188
Normal
-0.2
113
Tumor
-0.2
1027
Tumor
-0.2
444
Normal
-0.2
563
Tumor
-0.2
857
Tumor
-0.2
231
Tumor
-0.2
123
Tumor
-0.2
943
Tumor
-0.2
913
Tumor
-0.2
1041
Tumor
-0.2
445
Tumor
-0.2
268
Normal
-0.3
262
Normal
-0.3
363
Tumor
-0.3
131
Tumor
-0.3
192
Normal
-0.3
663
Tumor
-0.3
553
Tumor
-0.3
124
Normal
-0.3
881
Tumor
-0.3
447
Tumor
-0.3
635
Tumor
-0.3
545
Tumor
-0.3
393
Tumor
-0.3
161
Tumor
-0.3
617
Tumor
-0.3
217
Tumor
-0.3
451
Tumor
-0.4
227
Tumor
-0.4
1031
Tumor
-0.4
357
Tumor
-0.4
195
Tumor
-0.4
313
Tumor
-0.4
141
Tumor
-0.4
917
Tumor
-0.4
883
Tumor
-0.4
353
Tumor
-0.4
527
Tumor
-0.4
191
Tumor
-0.4
627
Tumor
-0.4
367
Tumor
-0.4
413
Tumor
-0.5
745
Tumor
-0.5
685
Tumor
-0.5
351
Tumor
-0.5
713
Tumor
-0.5
517
Tumor
-0.5
814
Normal
-0.5
213
Tumor
-0.5
271
Tumor
-0.5
455
Tumor
-0.6
331
Tumor
-0.6
463
Tumor
-0.6
813
Tumor
-0.6
145
Tumor
-0.6
187
Tumor
-0.6
171
Tumor
-0.6
471
Tumor
-0.6
535
Tumor
-0.6
697
Tumor
-0.6
443
Tumor
-0.7
387
Tumor
-0.7
953
Tumor
-0.7
221
Tumor
-0.7
185
Tumor
-0.7
921
Tumor
-0.7
823
Tumor
-0.7
641
Tumor
-0.7
467
Tumor
-0.7
421
Tumor
-0.7
383
Tumor
-0.8
297
Tumor
-0.8
665
Tumor
-0.8
427
Tumor
-0.8
375
Tumor
-0.8
557
Tumor
-0.8
567
Tumor
-0.8
863
Tumor
-0.9
951
Tumor
-0.9
925
Tumor
-0.9
283
Tumor
-1.0
815
Tumor
-1.0
1021
Tumor
-1.0
817
Tumor
-1.0
135
Tumor
-1.1
671
Tumor
-1.1
533
Tumor
-1.1
661
Tumor
-1.1
391
Tumor
-1.2
491
Tumor
-1.2
525
Tumor
-1.2
743
Tumor
-1.2
724
Normal
-1.2
311
Tumor
-1.3
537
Tumor
-1.3
385
Tumor
-1.3
211
Tumor
-1.3
425
Tumor
-1.3
257
Tumor
-1.4
343
Tumor
-1.4
395
Tumor
-1.5
125
Tumor
-1.9
573
Tumor
-2.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.