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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SCUBE1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
3.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
68.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
57.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
46.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
41.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
37.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
36.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
34.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
33.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
28.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
28.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
28.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
26.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
25.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
25.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
25.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
24.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
23.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
22.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
22.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
20.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
19.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
18.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
18.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
17.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
17.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
17.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
17.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
15.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
14.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
13.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
13.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
12.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
11.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
11.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
11.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
10.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
10.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
10.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
10.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
10.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
10.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
9.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
9.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
9.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
9.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
8.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
8.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
8.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
8.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
8.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
8.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
8.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
8.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
8.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
7.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
7.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
7.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
7.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
7.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
7.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
7.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
7.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
6.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
6.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
6.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
6.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
6.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
6.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
5.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
5.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
5.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
5.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
5.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
5.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
5.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
5.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
4.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
4.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
4.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
4.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
3.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
3.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
3.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
3.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
3.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
3.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
3.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
3.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
3.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
3.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
3.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
3.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
2.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
2.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
2.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
2.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
2.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
2.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
2.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
2.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
2.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
2.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
2.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
2.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
2.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
2.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
2.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
2.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
2.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
2.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
1.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
1.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
1.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
1.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
1.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
1.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
1.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
1.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
1.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
1.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
1.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
1.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
1.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
1.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
1.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
1.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
1.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
1.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
1.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
1.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
1.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
1.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
1.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
1.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
1.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
1.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
1.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
1.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
1.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
0.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
0.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
0.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
0.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
0.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
0.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
0.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
0.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
0.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
0.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
0.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
0.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
0.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
0.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
0.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
0.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
0.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
0.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
0.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
0.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
0.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
0.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
0.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
0.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
0.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
0.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
0.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
0.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
0.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
0.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
0.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
0.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
0.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
0.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
0.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
0.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
0.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
0.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
0.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
0.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
0.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
0.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
0.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
0.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
0.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
0.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
0.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
0.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
0.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
0.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
0.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
0.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
0.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
0.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
0.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
0.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
0.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
0.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
0.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
0.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
0.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
0.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
0.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
0.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
0.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
0.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
0.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
0.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
0.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
0.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
0.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
0.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
0.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
0.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
0.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
0.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
0.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
0.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
0.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
0.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
0.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
0.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
0.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
0.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
0.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
0.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
0.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
0.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
0.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
0.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
0.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
0.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
0.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
0.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
0.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
0.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
0.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
0.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
0.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
0.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
0.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
0.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
0.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
0.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
0.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
0.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
0.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
0.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
0.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
0.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
0.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
0.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
0.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
0.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
0.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
0.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SCUBE1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
2.8
Number of samples
231
Samples
Sample
Description
TPM
DO45125
0 years, male, NA, stage:3, alive, 1680 days
50.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
22.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
20.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
18.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
15.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
14.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
14.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
14.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
14.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
14.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
13.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
12.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
12.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
11.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
11.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
11.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
10.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
10.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
10.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
9.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
9.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
9.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
8.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
8.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
8.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
8.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
8.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
7.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
7.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
6.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
5.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
5.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
5.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
5.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
5.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
5.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
5.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
5.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
5.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
5.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
5.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
5.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
5.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
5.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
5.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
4.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
4.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
4.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
4.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
4.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
4.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
4.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
4.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
4.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
3.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
3.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
3.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
3.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
3.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
3.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
2.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
2.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
2.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
2.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
2.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
2.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
2.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
2.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
2.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
2.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
2.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
2.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
2.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
2.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
2.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
2.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
2.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
2.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
1.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
1.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
1.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
1.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
1.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
1.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
1.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
1.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
1.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
1.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
1.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
1.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
1.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
1.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
1.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
1.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
1.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
1.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
1.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
1.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
1.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
1.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
1.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
1.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
1.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
0.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
0.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
0.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
0.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
0.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
0.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
0.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
0.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
0.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
0.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
0.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
0.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
0.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
0.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
0.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
0.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
0.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
0.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
0.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
0.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
0.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
0.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
0.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
0.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
0.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
0.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
0.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
0.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
0.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
0.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
0.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
0.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
0.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
0.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
0.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
0.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
0.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
0.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
0.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
0.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
0.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
0.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
0.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
0.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
0.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
0.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
0.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
0.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
0.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
0.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
0.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
0.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
0.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
0.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
0.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
0.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
0.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
0.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
0.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
0.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
0.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
0.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
0.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
0.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
0.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
0.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
0.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
0.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
0.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
0.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
0.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
0.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
0.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
0.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
0.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
0.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
0.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
0.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
0.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
0.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
0.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
0.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
0.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
0.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
0.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
0.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
0.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
0.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
0.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
0.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
0.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
0.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
0.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
0.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
0.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
0.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
0.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
0.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
0.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
0.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
0.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
0.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
0.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
0.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
0.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
0.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
0.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
0.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
0.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
0.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
0.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
0.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
0.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
0.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
525
Tumor
2.2
915
Tumor
2.0
513
Tumor
2.0
451
Tumor
1.7
455
Tumor
1.5
1027
Tumor
1.5
361
Tumor
1.4
427
Tumor
1.3
857
Tumor
1.3
1041
Tumor
1.2
523
Tumor
1.1
461
Tumor
0.9
1042
Normal
0.7
858
Normal
0.7
231
Tumor
0.6
473
Tumor
0.6
574
Normal
0.6
568
Normal
0.6
355
Tumor
0.5
852
Normal
0.5
466
Normal
0.5
286
Normal
0.4
514
Normal
0.4
423
Tumor
0.4
564
Normal
0.4
414
Normal
0.4
376
Normal
0.4
557
Tumor
0.3
518
Normal
0.3
823
Tumor
0.3
428
Normal
0.3
567
Tumor
0.3
331
Tumor
0.3
563
Tumor
0.3
478
Normal
0.3
482
Normal
0.3
311
Tumor
0.2
312
Normal
0.2
224
Normal
0.2
127
Tumor
0.2
413
Tumor
0.2
786
Normal
0.2
1026
Normal
0.2
415
Tumor
0.2
1022
Normal
0.2
267
Tumor
0.2
421
Tumor
0.2
228
Normal
0.2
424
Normal
0.2
327
Tumor
0.2
926
Normal
0.2
212
Normal
0.2
818
Normal
0.2
756
Normal
0.1
425
Tumor
0.1
516
Normal
0.1
416
Normal
0.1
426
Normal
0.1
813
Tumor
0.1
313
Tumor
0.1
881
Tumor
0.1
922
Normal
0.1
1032
Normal
0.1
124
Normal
0.1
232
Normal
0.1
515
Tumor
0.1
481
Tumor
0.1
297
Tumor
0.0
474
Normal
0.0
277
Tumor
0.0
284
Normal
0.0
472
Normal
0.0
278
Normal
0.0
477
Tumor
0.0
913
Tumor
0.0
328
Normal
0.0
126
Normal
0.0
877
Tumor
0.0
911
Tumor
0.0
223
Tumor
0.0
411
Tumor
0.0
258
Normal
0.0
422
Normal
0.0
916
Normal
0.0
883
Tumor
-0.1
814
Normal
-0.1
462
Normal
-0.1
785
Tumor
-0.1
917
Tumor
-0.1
262
Normal
-0.1
298
Normal
-0.1
332
Normal
-0.1
924
Normal
-0.1
128
Normal
-0.1
364
Normal
-0.1
471
Tumor
-0.1
524
Normal
-0.1
755
Tumor
-0.1
363
Tumor
-0.1
918
Normal
-0.1
526
Normal
-0.1
816
Normal
-0.1
314
Normal
-0.1
111
Normal
-0.1
1028
Normal
-0.2
356
Normal
-0.2
272
Normal
-0.2
468
Normal
-0.2
412
Normal
-0.2
261
Tumor
-0.2
283
Tumor
-0.2
824
Normal
-0.2
572
Normal
-0.2
878
Normal
-0.2
362
Normal
-0.3
884
Normal
-0.3
882
Normal
-0.3
464
Normal
-0.3
271
Tumor
-0.3
912
Normal
-0.3
268
Normal
-0.3
384
Normal
-0.3
746
Normal
-0.3
114
Normal
-0.3
571
Tumor
-0.3
914
Normal
-0.4
778
Normal
-0.4
366
Normal
-0.4
257
Tumor
-0.4
558
Normal
-0.5
923
Tumor
-0.5
456
Normal
-0.5
383
Tumor
-0.6
467
Tumor
-0.6
211
Tumor
-0.6
365
Tumor
-0.6
452
Normal
-0.7
573
Tumor
-0.7
925
Tumor
-0.7
368
Normal
-0.8
227
Tumor
-0.8
1025
Tumor
-0.8
375
Tumor
-0.9
123
Tumor
-1.1
745
Tumor
-1.1
465
Tumor
-1.2
285
Tumor
-1.2
1031
Tumor
-1.2
125
Tumor
-1.2
1021
Tumor
-1.2
777
Tumor
-1.3
112
Tumor
-1.3
113
Tumor
-1.3
367
Tumor
-1.3
815
Tumor
-1.5
817
Tumor
-1.5
463
Tumor
-1.6
517
Tumor
-1.7
921
Tumor
-1.7
851
Tumor
-1.8
351
Tumor
N/A
352
Normal
N/A
353
Tumor
N/A
354
Normal
N/A
357
Tumor
N/A
358
Normal
N/A
483
Tumor
N/A
484
Normal
N/A
487
Tumor
N/A
488
Normal
N/A
491
Tumor
N/A
492
Normal
N/A
493
Tumor
N/A
131
Tumor
N/A
494
Normal
N/A
132
Normal
N/A
497
Tumor
N/A
135
Tumor
N/A
498
Normal
N/A
136
Normal
N/A
137
Tumor
N/A
138
Normal
N/A
937
Tumor
N/A
938
Normal
N/A
141
Tumor
N/A
142
Normal
N/A
385
Tumor
N/A
386
Normal
N/A
145
Tumor
N/A
387
Tumor
N/A
146
Normal
N/A
388
Normal
N/A
147
Tumor
N/A
148
Normal
N/A
943
Tumor
N/A
944
Normal
N/A
391
Tumor
N/A
392
Normal
N/A
393
Tumor
N/A
394
Normal
N/A
395
Tumor
N/A
396
Normal
N/A
1016
Normal
N/A
1015
Tumor
N/A
1014
Normal
N/A
951
Tumor
N/A
1013
Tumor
N/A
952
Normal
N/A
953
Tumor
N/A
954
Normal
N/A
713
Tumor
N/A
955
Tumor
N/A
714
Normal
N/A
956
Normal
N/A
715
Tumor
N/A
957
Tumor
N/A
716
Normal
N/A
958
Normal
N/A
161
Tumor
N/A
162
Normal
N/A
721
Tumor
N/A
963
Tumor
N/A
722
Normal
N/A
964
Normal
N/A
723
Tumor
N/A
965
Tumor
N/A
724
Normal
N/A
966
Normal
N/A
967
Tumor
N/A
968
Normal
N/A
727
Tumor
N/A
728
Normal
N/A
1044
Normal
N/A
1043
Tumor
N/A
171
Tumor
N/A
172
Normal
N/A
975
Tumor
N/A
976
Normal
N/A
977
Tumor
N/A
615
Tumor
N/A
978
Normal
N/A
616
Normal
N/A
737
Tumor
N/A
617
Tumor
N/A
738
Normal
N/A
618
Normal
N/A
185
Tumor
N/A
186
Normal
N/A
187
Tumor
N/A
188
Normal
N/A
981
Tumor
N/A
861
Tumor
N/A
982
Normal
N/A
741
Tumor
N/A
862
Normal
N/A
983
Tumor
N/A
742
Normal
N/A
863
Tumor
N/A
984
Normal
N/A
1046
Normal
N/A
743
Tumor
N/A
864
Normal
N/A
1045
Tumor
N/A
744
Normal
N/A
865
Tumor
N/A
866
Normal
N/A
867
Tumor
N/A
868
Normal
N/A
627
Tumor
N/A
628
Normal
N/A
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
873
Tumor
N/A
874
Normal
N/A
635
Tumor
N/A
636
Normal
N/A
641
Tumor
N/A
642
Normal
N/A
647
Tumor
N/A
527
Tumor
N/A
648
Normal
N/A
528
Normal
N/A
533
Tumor
N/A
534
Normal
N/A
535
Tumor
N/A
536
Normal
N/A
537
Tumor
N/A
538
Normal
N/A
661
Tumor
N/A
662
Normal
N/A
663
Tumor
N/A
664
Normal
N/A
665
Tumor
N/A
545
Tumor
N/A
666
Normal
N/A
546
Normal
N/A
671
Tumor
N/A
672
Normal
N/A
431
Tumor
N/A
432
Normal
N/A
553
Tumor
N/A
433
Tumor
N/A
554
Normal
N/A
434
Normal
N/A
435
Tumor
N/A
436
Normal
N/A
443
Tumor
N/A
685
Tumor
N/A
444
Normal
N/A
686
Normal
N/A
445
Tumor
N/A
446
Normal
N/A
447
Tumor
N/A
448
Normal
N/A
695
Tumor
N/A
696
Normal
N/A
213
Tumor
N/A
697
Tumor
N/A
214
Normal
N/A
698
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
341
Tumor
N/A
221
Tumor
N/A
342
Normal
N/A
222
Normal
N/A
343
Tumor
N/A
344
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
