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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
UBE2Z is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
25.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
132.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
103.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
96.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
90.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
89.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
82.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
77.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
73.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
73.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
71.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
70.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
69.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
62.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
61.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
58.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
58.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
56.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
56.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
55.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
54.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
53.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
50.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
50.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
49.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
49.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
49.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
48.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
48.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
48.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
47.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
47.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
46.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
45.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
44.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
43.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
43.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
42.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
41.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
41.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
41.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
41.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
41.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
41.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
39.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
39.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
39.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
38.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
38.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
37.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
37.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
37.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
37.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
36.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
36.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
35.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
35.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
35.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
35.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
34.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
34.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
34.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
34.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
34.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
34.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
34.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
33.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
33.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
33.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
32.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
32.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
32.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
32.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
32.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
32.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
32.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
32.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
31.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
31.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
31.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
31.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
31.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
30.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
30.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
30.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
30.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
30.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
30.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
30.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
30.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
30.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
29.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
29.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
29.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
29.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
29.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
29.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
29.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
29.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
29.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
28.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
28.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
28.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
28.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
28.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
28.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
28.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
27.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
27.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
27.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
27.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
27.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
27.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
27.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
27.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
27.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
26.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
26.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
26.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
26.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
26.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
26.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
26.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
26.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
26.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
26.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
26.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
26.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
25.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
25.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
25.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
25.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
25.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
25.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
25.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
25.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
25.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
25.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
25.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
25.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
24.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
24.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
24.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
24.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
24.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
23.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
23.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
23.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
23.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
23.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
23.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
23.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
22.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
22.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
22.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
22.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
22.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
22.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
22.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
22.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
22.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
22.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
22.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
22.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
21.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
21.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
21.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
21.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
21.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
21.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
21.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
21.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
21.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
21.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
21.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
21.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
21.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
21.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
21.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
21.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
21.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
21.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
20.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
20.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
20.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
20.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
20.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
20.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
20.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
20.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
20.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
20.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
20.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
20.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
20.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
20.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
20.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
20.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
20.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
20.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
20.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
20.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
20.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
19.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
19.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
19.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
19.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
19.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
19.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
19.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
19.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
19.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
19.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
19.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
18.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
18.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
18.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
18.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
18.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
18.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
18.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
18.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
18.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
18.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
18.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
18.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
18.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
18.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
18.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
18.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
18.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
18.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
18.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
18.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
17.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
17.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
17.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
17.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
17.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
17.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
17.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
17.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
17.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
17.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
17.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
17.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
17.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
17.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
17.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
17.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
17.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
16.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
16.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
16.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
16.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
16.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
16.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
16.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
16.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
16.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
16.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
16.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
16.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
16.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
16.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
16.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
16.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
15.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
15.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
15.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
15.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
15.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
15.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
15.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
15.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
15.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
15.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
15.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
15.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
15.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
15.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
15.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
15.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
15.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
14.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
14.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
14.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
14.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
14.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
14.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
14.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
14.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
14.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
14.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
14.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
14.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
14.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
14.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
13.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
13.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
13.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
13.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
13.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
13.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
13.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
13.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
13.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
12.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
12.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
12.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
12.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
12.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
12.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
12.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
12.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
12.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
12.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
12.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
12.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
12.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
12.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
12.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
12.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
12.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
12.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
12.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
11.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
11.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
11.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
11.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
11.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
11.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
11.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
11.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
11.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
11.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
11.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
11.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
11.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
10.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
10.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
10.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
10.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
10.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
10.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
9.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
9.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
9.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
8.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
8.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
8.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
8.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
8.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
8.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
8.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
8.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
8.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
7.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
7.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
6.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
5.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
UBE2Z is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
27.1
Number of samples
231
Samples
Sample
Description
TPM
DO45307
0 years, female, NA, stage:4, dead, 240 days
91.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
78.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
74.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
74.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
70.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
65.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
64.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
64.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
63.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
63.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
61.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
59.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
58.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
55.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
55.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
52.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
52.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
48.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
47.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
47.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
47.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
46.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
46.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
45.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
45.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
45.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
44.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
44.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
44.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
44.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
44.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
43.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
42.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
42.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
41.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
41.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
40.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
40.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
40.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
39.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
39.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
39.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
39.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
39.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
38.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
36.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
35.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
34.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
34.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
34.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
33.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
33.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
33.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
33.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
33.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
33.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
33.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
32.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
32.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
32.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
31.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
31.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
31.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
31.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
31.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
30.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
30.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
30.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
30.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
29.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
29.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
29.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
29.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
29.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
29.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
29.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
29.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
29.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
28.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
28.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
28.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
28.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
28.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
27.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
27.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
26.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
26.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
26.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
26.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
26.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
26.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
26.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
26.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
26.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
26.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
26.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
25.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
24.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
24.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
24.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
24.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
23.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
23.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
23.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
23.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
23.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
23.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
23.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
23.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
23.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
22.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
22.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
22.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
22.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
22.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
22.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
22.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
22.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
22.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
22.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
22.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
22.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
22.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
22.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
22.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
22.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
22.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
21.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
21.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
21.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
21.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
21.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
21.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
21.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
21.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
21.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
21.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
20.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
20.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
20.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
20.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
20.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
20.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
20.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
20.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
20.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
20.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
20.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
20.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
20.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
20.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
20.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
19.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
19.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
19.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
19.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
18.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
18.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
18.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
18.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
18.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
18.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
18.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
18.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
18.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
18.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
17.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
17.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
17.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
17.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
17.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
17.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
17.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
17.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
17.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
17.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
17.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
16.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
16.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
16.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
16.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
16.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
16.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
16.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
15.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
15.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
15.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
15.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
15.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
15.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
15.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
15.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
15.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
15.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
14.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
14.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
14.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
14.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
14.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
14.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
14.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
14.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
13.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
13.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
13.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
13.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
13.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
13.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
13.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
13.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
13.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
13.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
12.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
12.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
12.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
12.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
11.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
11.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
11.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
11.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
11.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
11.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
11.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
11.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
10.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
10.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
10.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
10.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
9.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
8.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
7.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
533
Tumor
1.2
957
Tumor
1.1
745
Tumor
0.9
815
Tumor
0.8
685
Tumor
0.8
661
Tumor
0.8
385
Tumor
0.7
741
Tumor
0.7
367
Tumor
0.7
211
Tumor
0.7
285
Tumor
0.6
1013
Tumor
0.6
257
Tumor
0.6
743
Tumor
0.6
1043
Tumor
0.6
497
Tumor
0.6
981
Tumor
0.6
283
Tumor
0.6
537
Tumor
0.6
861
Tumor
0.6
375
Tumor
0.6
131
Tumor
0.6
471
Tumor
0.6
983
Tumor
0.5
965
Tumor
0.5
1027
Tumor
0.5
545
Tumor
0.5
311
Tumor
0.5
355
Tumor
0.5
525
Tumor
0.5
573
Tumor
0.5
535
Tumor
0.5
567
Tumor
0.4
213
Tumor
0.4
925
Tumor
0.4
411
Tumor
0.4
737
Tumor
0.4
727
Tumor
0.4
127
Tumor
0.4
393
Tumor
0.4
351
Tumor
0.4
147
Tumor
0.4
557
Tumor
0.3
715
Tumor
0.3
455
Tumor
0.3
953
Tumor
0.3
363
Tumor
0.3
387
Tumor
0.3
851
Tumor
0.3
865
Tumor
0.3
493
Tumor
0.3
297
Tumor
0.3
141
Tumor
0.3
343
Tumor
0.2
185
Tumor
0.2
391
Tumor
0.2
917
Tumor
0.2
943
Tumor
0.2
523
Tumor
0.2
1021
Tumor
0.2
413
Tumor
0.2
695
Tumor
0.2
617
Tumor
0.2
951
Tumor
0.2
937
Tumor
0.2
538
Normal
0.2
125
Tumor
0.2
461
Tumor
0.2
483
Tumor
0.2
777
Tumor
0.2
1031
Tumor
0.2
231
Tumor
0.2
434
Normal
0.2
443
Tumor
0.1
963
Tumor
0.1
641
Tumor
0.1
975
Tumor
0.1
313
Tumor
0.1
277
Tumor
0.1
395
Tumor
0.1
492
Normal
0.1
817
Tumor
0.1
1015
Tumor
0.1
171
Tumor
0.1
671
Tumor
0.1
527
Tumor
0.1
477
Tumor
0.1
473
Tumor
0.1
913
Tumor
0.1
635
Tumor
0.1
923
Tumor
0.1
357
Tumor
0.1
137
Tumor
0.1
161
Tumor
0.1
465
Tumor
0.1
447
Tumor
0.1
966
Normal
0.0
487
Tumor
0.0
857
Tumor
0.0
113
Tumor
0.0
513
Tumor
0.0
223
Tumor
0.0
967
Tumor
0.0
515
Tumor
0.0
271
Tumor
0.0
627
Tumor
0.0
536
Normal
0.0
723
Tumor
0.0
126
Normal
0.0
724
Normal
0.0
881
Tumor
0.0
915
Tumor
0.0
227
Tumor
0.0
425
Tumor
0.0
663
Tumor
0.0
914
Normal
0.0
188
Normal
0.0
553
Tumor
0.0
755
Tumor
0.0
331
Tumor
0.0
823
Tumor
0.0
365
Tumor
0.0
524
Normal
0.0
423
Tumor
0.0
431
Tumor
0.0
744
Normal
-0.1
877
Tumor
-0.1
554
Normal
-0.1
563
Tumor
-0.1
261
Tumor
-0.1
952
Normal
-0.1
867
Tumor
-0.1
262
Normal
-0.1
463
Tumor
-0.1
1025
Tumor
-0.1
516
Normal
-0.1
883
Tumor
-0.1
421
Tumor
-0.1
1045
Tumor
-0.1
341
Tumor
-0.1
268
Normal
-0.1
445
Tumor
-0.1
921
Tumor
-0.1
746
Normal
-0.1
386
Normal
-0.1
478
Normal
-0.1
435
Tumor
-0.1
267
Tumor
-0.1
433
Tumor
-0.1
742
Normal
-0.1
916
Normal
-0.1
518
Normal
-0.1
738
Normal
-0.1
272
Normal
-0.1
955
Tumor
-0.1
546
Normal
-0.1
451
Tumor
-0.2
114
Normal
-0.2
911
Tumor
-0.2
366
Normal
-0.2
956
Normal
-0.2
491
Tumor
-0.2
874
Normal
-0.2
813
Tumor
-0.2
517
Tumor
-0.2
448
Normal
-0.2
135
Tumor
-0.2
852
Normal
-0.2
124
Normal
-0.2
647
Tumor
-0.2
697
Tumor
-0.2
728
Normal
-0.2
444
Normal
-0.2
146
Normal
-0.2
1026
Normal
-0.2
111
Normal
-0.2
1022
Normal
-0.2
816
Normal
-0.2
978
Normal
-0.2
1028
Normal
-0.2
112
Tumor
-0.2
123
Tumor
-0.2
721
Tumor
-0.2
954
Normal
-0.2
186
Normal
-0.2
814
Normal
-0.2
1041
Tumor
-0.2
353
Tumor
-0.2
662
Normal
-0.2
977
Tumor
-0.2
665
Tumor
-0.2
427
Tumor
-0.2
467
Tumor
-0.2
484
Normal
-0.2
873
Tumor
-0.2
882
Normal
-0.2
498
Normal
-0.2
342
Normal
-0.2
863
Tumor
-0.2
138
Normal
-0.2
878
Normal
-0.2
713
Tumor
-0.2
785
Tumor
-0.2
618
Normal
-0.2
383
Tumor
-0.2
628
Normal
-0.2
415
Tumor
-0.2
968
Normal
-0.2
912
Normal
-0.3
984
Normal
-0.3
258
Normal
-0.3
344
Normal
-0.3
534
Normal
-0.3
162
Normal
-0.3
574
Normal
-0.3
232
Normal
-0.3
362
Normal
-0.3
616
Normal
-0.3
132
Normal
-0.3
474
Normal
-0.3
664
Normal
-0.3
818
Normal
-0.3
884
Normal
-0.3
976
Normal
-0.3
361
Tumor
-0.3
698
Normal
-0.3
376
Normal
-0.3
858
Normal
-0.3
312
Normal
-0.3
136
Normal
-0.3
924
Normal
-0.3
862
Normal
-0.3
1042
Normal
-0.3
982
Normal
-0.3
298
Normal
-0.3
172
Normal
-0.3
358
Normal
-0.3
526
Normal
-0.3
514
Normal
-0.3
778
Normal
-0.3
217
Tumor
-0.3
456
Normal
-0.3
221
Tumor
-0.3
327
Tumor
-0.3
412
Normal
-0.3
284
Normal
-0.3
187
Tumor
-0.3
368
Normal
-0.3
1014
Normal
-0.3
228
Normal
-0.3
482
Normal
-0.4
864
Normal
-0.4
212
Normal
-0.4
214
Normal
-0.4
868
Normal
-0.4
145
Tumor
-0.4
278
Normal
-0.4
384
Normal
-0.4
128
Normal
-0.4
416
Normal
-0.4
666
Normal
-0.4
1016
Normal
-0.4
944
Normal
-0.4
472
Normal
-0.4
615
Tumor
-0.4
958
Normal
-0.4
394
Normal
-0.4
488
Normal
-0.4
938
Normal
-0.4
568
Normal
-0.4
964
Normal
-0.4
918
Normal
-0.4
716
Normal
-0.4
195
Tumor
-0.4
392
Normal
-0.4
148
Normal
-0.4
1044
Normal
-0.4
452
Normal
-0.4
922
Normal
-0.4
332
Normal
-0.4
824
Normal
-0.4
696
Normal
-0.4
224
Normal
-0.4
436
Normal
-0.4
528
Normal
-0.4
462
Normal
-0.4
672
Normal
-0.4
396
Normal
-0.4
468
Normal
-0.4
642
Normal
-0.4
218
Normal
-0.4
352
Normal
-0.4
926
Normal
-0.4
426
Normal
-0.4
466
Normal
-0.4
192
Normal
-0.4
714
Normal
-0.4
432
Normal
-0.5
1032
Normal
-0.5
1046
Normal
-0.5
558
Normal
-0.5
686
Normal
-0.5
142
Normal
-0.5
422
Normal
-0.5
354
Normal
-0.5
364
Normal
-0.5
494
Normal
-0.5
572
Normal
-0.5
866
Normal
-0.5
571
Tumor
-0.5
446
Normal
-0.5
314
Normal
-0.5
388
Normal
-0.5
648
Normal
-0.5
196
Normal
-0.5
356
Normal
-0.5
756
Normal
-0.5
564
Normal
-0.5
786
Normal
-0.6
286
Normal
-0.6
481
Tumor
-0.6
636
Normal
-0.6
464
Normal
-0.6
222
Normal
-0.6
328
Normal
-0.6
428
Normal
-0.6
414
Normal
-0.7
722
Normal
-0.7
191
Tumor
-0.8
424
Normal
-0.8
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
