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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RCAN1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
21.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
221.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
125.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
120.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
108.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
89.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
84.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
74.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
73.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
73.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
69.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
69.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
69.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
66.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
65.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
64.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
63.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
60.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
60.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
60.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
59.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
58.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
58.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
57.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
56.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
54.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
53.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
52.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
52.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
52.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
51.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
50.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
50.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
47.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
46.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
44.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
42.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
42.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
42.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
42.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
41.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
41.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
41.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
40.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
40.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
38.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
38.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
38.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
37.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
37.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
36.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
36.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
36.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
36.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
35.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
35.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
35.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
34.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
34.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
34.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
34.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
34.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
33.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
33.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
32.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
32.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
32.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
32.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
31.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
31.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
31.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
31.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
30.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
30.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
29.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
29.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
29.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
29.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
28.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
28.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
28.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
27.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
27.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
27.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
27.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
27.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
27.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
27.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
26.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
26.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
26.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
26.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
26.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
25.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
25.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
25.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
25.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
25.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
25.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
24.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
24.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
24.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
24.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
24.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
23.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
23.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
23.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
23.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
23.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
22.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
22.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
22.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
22.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
21.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
21.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
21.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
21.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
21.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
21.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
21.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
21.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
21.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
21.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
20.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
20.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
20.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
20.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
20.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
20.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
20.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
20.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
20.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
19.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
19.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
19.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
19.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
19.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
19.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
19.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
19.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
19.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
19.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
19.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
19.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
18.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
18.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
18.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
18.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
18.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
18.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
18.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
18.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
18.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
18.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
18.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
18.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
18.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
18.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
17.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
17.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
17.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
17.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
17.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
17.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
17.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
17.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
17.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
17.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
17.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
17.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
17.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
17.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
17.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
16.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
16.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
16.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
16.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
16.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
16.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
16.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
16.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
16.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
16.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
16.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
16.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
16.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
15.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
15.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
15.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
15.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
15.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
15.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
15.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
15.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
15.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
15.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
15.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
15.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
14.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
14.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
14.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
14.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
14.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
14.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
14.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
14.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
14.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
14.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
14.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
14.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
14.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
13.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
13.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
13.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
13.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
13.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
13.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
13.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
13.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
13.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
13.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
13.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
13.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
13.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
13.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
13.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
13.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
13.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
13.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
13.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
12.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
12.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
12.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
12.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
12.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
12.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
12.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
12.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
12.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
12.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
12.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
12.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
12.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
12.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
12.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
12.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
12.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
12.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
11.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
11.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
11.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
11.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
11.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
11.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
11.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
11.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
11.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
11.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
11.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
11.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
10.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
10.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
10.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
10.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
10.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
10.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
10.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
10.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
10.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
10.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
10.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
10.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
10.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
10.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
10.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
10.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
9.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
9.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
9.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
9.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
9.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
9.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
9.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
9.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
9.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
9.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
9.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
9.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
9.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
8.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
8.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
8.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
8.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
8.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
8.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
8.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
8.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
8.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
8.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
8.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
8.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
8.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
8.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
7.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
7.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
7.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
7.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
7.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
7.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
7.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
7.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
7.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
7.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
7.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
7.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
7.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
7.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
7.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
6.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
6.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
6.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
6.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
6.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
6.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
6.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
6.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
6.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
6.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
6.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
6.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
6.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
6.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
5.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
5.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
5.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
5.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
5.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
5.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
5.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
5.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
5.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
5.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
5.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
5.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
4.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
4.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
4.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
4.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
4.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
4.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
3.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
3.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
3.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RCAN1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
24.6
Number of samples
231
Samples
Sample
Description
TPM
DO23551
0 years, male, NA, stage:3, dead, 150 days
121.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
97.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
90.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
76.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
75.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
74.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
74.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
72.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
63.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
62.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
57.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
56.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
54.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
53.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
53.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
52.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
51.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
50.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
50.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
49.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
49.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
49.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
47.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
47.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
46.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
46.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
44.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
44.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
44.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
43.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
43.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
42.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
41.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
40.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
39.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
38.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
38.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
38.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
38.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
38.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
37.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
37.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
36.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
36.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
35.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
35.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
34.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
34.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
34.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
33.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
32.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
32.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
31.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
31.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
30.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
30.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
30.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
30.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
30.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
29.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
29.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
29.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
29.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
28.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
28.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
28.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
28.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
27.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
27.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
27.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
27.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
27.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
27.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
27.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
27.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
27.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
27.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
27.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
27.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
27.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
26.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
26.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
26.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
25.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
25.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
25.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
25.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
25.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
24.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
24.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
24.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
24.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
24.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
24.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
24.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
23.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
23.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
23.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
23.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
23.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
22.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
22.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
22.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
22.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
21.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
21.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
21.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
21.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
21.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
21.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
20.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
20.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
20.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
20.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
20.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
19.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
19.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
19.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
19.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
19.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
19.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
19.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
19.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
18.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
18.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
18.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
18.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
18.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
18.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
18.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
18.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
18.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
17.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
17.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
17.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
17.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
17.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
17.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
16.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
16.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
16.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
16.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
16.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
16.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
16.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
16.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
16.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
15.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
15.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
15.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
15.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
15.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
15.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
14.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
14.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
14.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
14.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
14.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
14.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
14.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
13.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
13.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
13.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
13.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
13.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
13.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
13.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
13.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
12.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
12.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
12.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
12.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
12.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
12.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
11.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
11.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
11.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
11.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
11.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
11.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
11.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
11.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
11.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
11.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
10.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
10.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
10.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
10.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
10.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
10.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
10.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
10.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
10.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
10.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
10.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
10.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
10.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
10.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
10.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
9.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
9.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
9.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
9.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
9.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
9.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
8.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
8.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
8.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
8.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
8.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
8.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
8.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
7.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
7.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
7.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
7.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
7.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
7.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
7.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
7.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
7.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
7.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
7.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
6.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
6.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
6.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
5.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
5.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
4.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
4.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
3.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
635
Tumor
1.2
727
Tumor
1.0
743
Tumor
0.9
286
Normal
0.9
981
Tumor
0.9
223
Tumor
0.9
554
Normal
0.8
714
Normal
0.8
861
Tumor
0.8
228
Normal
0.7
615
Tumor
0.7
1042
Normal
0.7
261
Tumor
0.7
1046
Normal
0.7
1022
Normal
0.7
722
Normal
0.7
911
Tumor
0.7
534
Normal
0.7
716
Normal
0.7
528
Normal
0.7
698
Normal
0.7
1041
Tumor
0.6
1026
Normal
0.6
366
Normal
0.6
224
Normal
0.6
867
Tumor
0.6
982
Normal
0.6
918
Normal
0.6
926
Normal
0.6
915
Tumor
0.5
1016
Normal
0.5
222
Normal
0.5
1044
Normal
0.5
914
Normal
0.5
132
Normal
0.5
715
Tumor
0.5
818
Normal
0.5
284
Normal
0.5
862
Normal
0.5
1032
Normal
0.5
816
Normal
0.5
866
Normal
0.5
258
Normal
0.5
227
Tumor
0.5
922
Normal
0.4
196
Normal
0.4
882
Normal
0.4
858
Normal
0.4
1014
Normal
0.4
874
Normal
0.4
328
Normal
0.4
448
Normal
0.4
686
Normal
0.4
516
Normal
0.4
518
Normal
0.4
956
Normal
0.4
852
Normal
0.4
1028
Normal
0.4
526
Normal
0.3
924
Normal
0.3
944
Normal
0.3
864
Normal
0.3
912
Normal
0.3
546
Normal
0.3
192
Normal
0.3
824
Normal
0.3
515
Tumor
0.3
465
Tumor
0.3
868
Normal
0.3
571
Tumor
0.3
272
Normal
0.3
723
Tumor
0.3
471
Tumor
0.3
262
Normal
0.3
564
Normal
0.3
878
Normal
0.3
538
Normal
0.3
696
Normal
0.3
268
Normal
0.3
513
Tumor
0.3
938
Normal
0.3
142
Normal
0.3
978
Normal
0.3
514
Normal
0.3
327
Tumor
0.2
884
Normal
0.2
574
Normal
0.2
642
Normal
0.2
863
Tumor
0.2
214
Normal
0.2
955
Tumor
0.2
464
Normal
0.2
364
Normal
0.2
568
Normal
0.2
137
Tumor
0.2
138
Normal
0.2
212
Normal
0.2
136
Normal
0.2
468
Normal
0.2
412
Normal
0.2
356
Normal
0.2
218
Normal
0.1
271
Tumor
0.1
466
Normal
0.1
257
Tumor
0.1
365
Tumor
0.1
477
Tumor
0.1
285
Tumor
0.1
572
Normal
0.1
984
Normal
0.1
474
Normal
0.1
456
Normal
0.1
211
Tumor
0.1
1045
Tumor
0.1
695
Tumor
0.1
815
Tumor
0.1
191
Tumor
0.1
384
Normal
0.1
232
Normal
0.1
916
Normal
0.1
728
Normal
0.1
217
Tumor
0.1
567
Tumor
0.0
1015
Tumor
0.0
618
Normal
0.0
498
Normal
0.0
462
Normal
0.0
231
Tumor
0.0
1027
Tumor
0.0
1025
Tumor
0.0
363
Tumor
0.0
1031
Tumor
0.0
416
Normal
0.0
517
Tumor
0.0
488
Normal
0.0
455
Tumor
0.0
472
Normal
0.0
524
Normal
0.0
742
Normal
0.0
913
Tumor
0.0
283
Tumor
0.0
954
Normal
0.0
461
Tumor
0.0
553
Tumor
0.0
376
Normal
0.0
362
Normal
0.0
195
Tumor
0.0
146
Normal
0.0
452
Normal
0.0
741
Tumor
-0.1
145
Tumor
-0.1
923
Tumor
-0.1
558
Normal
-0.1
952
Normal
-0.1
523
Tumor
-0.1
953
Tumor
-0.1
536
Normal
-0.1
721
Tumor
-0.1
873
Tumor
-0.1
738
Normal
-0.1
744
Normal
-0.1
484
Normal
-0.1
451
Tumor
-0.1
525
Tumor
-0.1
713
Tumor
-0.1
494
Normal
-0.1
883
Tumor
-0.2
563
Tumor
-0.2
481
Tumor
-0.2
881
Tumor
-0.2
925
Tumor
-0.2
1043
Tumor
-0.2
877
Tumor
-0.2
361
Tumor
-0.2
482
Normal
-0.2
267
Tumor
-0.2
527
Tumor
-0.2
1021
Tumor
-0.2
685
Tumor
-0.2
857
Tumor
-0.2
141
Tumor
-0.2
473
Tumor
-0.2
724
Normal
-0.2
368
Normal
-0.3
943
Tumor
-0.3
213
Tumor
-0.3
545
Tumor
-0.3
977
Tumor
-0.3
221
Tumor
-0.3
533
Tumor
-0.3
415
Tumor
-0.3
917
Tumor
-0.3
823
Tumor
-0.3
537
Tumor
-0.4
411
Tumor
-0.4
557
Tumor
-0.4
737
Tumor
-0.4
851
Tumor
-0.4
921
Tumor
-0.4
355
Tumor
-0.4
447
Tumor
-0.4
1013
Tumor
-0.4
367
Tumor
-0.4
983
Tumor
-0.4
463
Tumor
-0.5
131
Tumor
-0.6
467
Tumor
-0.6
492
Normal
-0.6
937
Tumor
-0.6
865
Tumor
-0.6
817
Tumor
-0.6
697
Tumor
-0.6
573
Tumor
-0.7
135
Tumor
-0.7
375
Tumor
-0.7
627
Tumor
-0.8
535
Tumor
-0.8
478
Normal
-0.8
636
Normal
-0.8
487
Tumor
-0.9
493
Tumor
-0.9
383
Tumor
-1.0
491
Tumor
-1.0
497
Tumor
-1.0
951
Tumor
-1.1
617
Tumor
-1.2
483
Tumor
-1.2
641
Tumor
-1.4
628
Normal
-1.6
616
Normal
-2.7
351
Tumor
N/A
352
Normal
N/A
111
Normal
N/A
353
Tumor
N/A
112
Tumor
N/A
354
Normal
N/A
113
Tumor
N/A
114
Normal
N/A
357
Tumor
N/A
358
Normal
N/A
123
Tumor
N/A
124
Normal
N/A
125
Tumor
N/A
126
Normal
N/A
127
Tumor
N/A
128
Normal
N/A
813
Tumor
N/A
814
Normal
N/A
385
Tumor
N/A
386
Normal
N/A
387
Tumor
N/A
388
Normal
N/A
147
Tumor
N/A
148
Normal
N/A
391
Tumor
N/A
392
Normal
N/A
393
Tumor
N/A
394
Normal
N/A
395
Tumor
N/A
396
Normal
N/A
277
Tumor
N/A
278
Normal
N/A
957
Tumor
N/A
958
Normal
N/A
161
Tumor
N/A
162
Normal
N/A
963
Tumor
N/A
964
Normal
N/A
965
Tumor
N/A
966
Normal
N/A
967
Tumor
N/A
968
Normal
N/A
171
Tumor
N/A
172
Normal
N/A
297
Tumor
N/A
298
Normal
N/A
975
Tumor
N/A
976
Normal
N/A
185
Tumor
N/A
186
Normal
N/A
187
Tumor
N/A
188
Normal
N/A
745
Tumor
N/A
746
Normal
N/A
755
Tumor
N/A
756
Normal
N/A
647
Tumor
N/A
648
Normal
N/A
413
Tumor
N/A
414
Normal
N/A
777
Tumor
N/A
778
Normal
N/A
661
Tumor
N/A
662
Normal
N/A
421
Tumor
N/A
663
Tumor
N/A
422
Normal
N/A
664
Normal
N/A
785
Tumor
N/A
423
Tumor
N/A
665
Tumor
N/A
786
Normal
N/A
424
Normal
N/A
666
Normal
N/A
425
Tumor
N/A
426
Normal
N/A
427
Tumor
N/A
428
Normal
N/A
671
Tumor
N/A
672
Normal
N/A
431
Tumor
N/A
311
Tumor
N/A
432
Normal
N/A
312
Normal
N/A
433
Tumor
N/A
313
Tumor
N/A
434
Normal
N/A
314
Normal
N/A
435
Tumor
N/A
436
Normal
N/A
443
Tumor
N/A
444
Normal
N/A
445
Tumor
N/A
446
Normal
N/A
331
Tumor
N/A
332
Normal
N/A
341
Tumor
N/A
342
Normal
N/A
343
Tumor
N/A
344
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
