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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MRPL10 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
24.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
139.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
71.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
66.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
63.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
62.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
60.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
58.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
56.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
53.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
52.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
51.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
50.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
50.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
50.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
49.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
48.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
47.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
47.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
45.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
44.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
44.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
43.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
43.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
43.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
42.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
42.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
42.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
42.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
41.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
41.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
41.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
41.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
41.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
40.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
40.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
40.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
39.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
39.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
39.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
38.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
37.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
37.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
37.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
36.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
36.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
36.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
36.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
35.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
35.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
35.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
35.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
35.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
35.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
34.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
34.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
33.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
33.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
33.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
33.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
33.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
32.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
32.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
32.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
31.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
31.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
31.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
31.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
31.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
30.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
30.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
30.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
30.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
30.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
30.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
30.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
30.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
29.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
29.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
29.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
29.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
29.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
29.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
29.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
29.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
29.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
29.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
29.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
29.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
28.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
28.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
28.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
28.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
28.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
28.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
28.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
28.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
28.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
28.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
27.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
27.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
27.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
27.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
27.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
27.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
27.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
27.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
26.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
26.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
26.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
26.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
26.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
26.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
26.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
26.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
26.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
26.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
26.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
26.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
26.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
26.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
25.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
25.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
25.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
25.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
25.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
25.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
25.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
25.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
25.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
25.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
25.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
25.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
24.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
24.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
24.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
24.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
24.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
24.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
24.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
24.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
24.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
24.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
24.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
24.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
24.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
24.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
24.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
23.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
23.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
23.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
23.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
23.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
23.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
23.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
23.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
23.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
23.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
23.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
23.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
23.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
23.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
23.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
23.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
23.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
23.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
22.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
22.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
22.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
22.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
22.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
22.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
22.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
22.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
22.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
22.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
22.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
22.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
22.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
21.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
21.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
21.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
21.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
21.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
21.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
21.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
21.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
21.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
21.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
21.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
21.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
21.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
21.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
21.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
21.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
21.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
21.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
20.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
20.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
20.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
20.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
20.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
20.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
20.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
20.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
20.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
20.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
20.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
20.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
20.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
20.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
20.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
19.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
19.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
19.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
19.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
19.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
19.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
19.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
19.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
19.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
19.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
19.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
19.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
19.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
19.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
19.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
19.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
19.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
19.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
19.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
19.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
19.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
19.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
18.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
18.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
18.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
18.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
18.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
18.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
18.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
18.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
18.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
18.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
18.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
18.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
18.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
18.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
18.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
18.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
18.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
18.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
18.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
17.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
17.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
17.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
17.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
17.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
17.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
17.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
17.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
17.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
17.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
17.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
17.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
17.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
17.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
17.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
17.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
17.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
17.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
17.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
16.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
16.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
16.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
16.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
16.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
16.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
16.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
16.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
16.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
16.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
16.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
16.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
16.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
16.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
16.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
16.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
16.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
16.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
15.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
15.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
15.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
15.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
15.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
15.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
15.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
15.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
15.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
15.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
15.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
15.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
15.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
15.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
15.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
14.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
14.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
14.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
14.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
14.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
14.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
14.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
14.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
14.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
14.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
14.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
14.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
14.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
13.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
13.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
13.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
13.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
13.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
13.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
13.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
13.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
13.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
13.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
13.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
12.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
12.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
12.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
12.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
12.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
12.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
12.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
12.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
12.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
12.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
12.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
11.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
11.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
11.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
11.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
11.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
11.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
11.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
11.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
11.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
10.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
10.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
10.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
10.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
10.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
10.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
10.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
10.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
10.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
9.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
8.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
7.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
7.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MRPL10 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
19.2
Number of samples
231
Samples
Sample
Description
TPM
DO50799
0 years, female, NA, stage:2, alive, 540 days
72.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
61.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
49.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
49.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
43.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
39.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
37.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
36.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
35.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
35.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
34.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
34.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
34.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
34.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
32.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
32.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
32.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
31.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
31.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
31.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
30.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
29.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
29.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
29.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
28.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
28.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
28.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
28.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
27.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
27.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
27.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
27.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
27.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
27.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
26.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
26.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
26.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
25.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
25.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
25.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
25.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
25.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
25.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
24.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
24.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
24.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
24.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
24.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
23.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
23.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
23.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
23.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
23.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
23.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
23.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
23.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
22.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
22.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
22.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
22.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
22.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
22.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
22.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
22.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
22.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
22.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
21.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
21.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
21.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
21.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
21.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
21.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
21.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
20.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
20.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
20.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
20.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
20.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
20.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
20.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
20.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
20.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
20.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
19.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
19.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
19.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
19.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
19.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
19.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
19.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
19.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
19.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
19.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
19.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
18.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
18.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
18.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
18.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
18.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
18.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
18.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
18.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
18.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
18.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
18.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
18.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
18.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
17.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
17.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
17.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
17.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
17.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
17.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
17.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
17.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
16.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
16.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
16.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
16.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
16.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
16.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
16.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
16.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
16.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
16.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
16.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
16.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
16.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
16.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
16.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
16.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
16.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
16.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
16.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
15.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
15.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
15.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
15.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
15.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
15.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
15.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
15.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
15.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
15.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
15.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
15.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
15.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
15.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
15.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
15.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
15.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
15.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
14.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
14.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
14.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
14.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
14.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
14.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
14.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
14.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
14.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
14.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
14.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
13.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
13.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
13.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
13.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
13.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
13.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
13.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
13.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
13.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
13.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
13.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
13.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
13.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
13.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
13.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
13.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
13.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
13.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
13.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
12.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
12.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
12.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
12.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
12.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
12.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
12.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
12.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
12.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
12.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
12.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
12.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
12.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
12.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
12.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
12.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
12.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
12.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
11.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
11.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
11.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
11.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
11.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
11.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
11.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
11.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
10.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
10.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
10.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
10.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
10.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
10.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
10.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
10.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
10.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
10.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
10.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
10.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
9.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
9.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
9.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
9.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
9.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
9.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
8.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
8.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
7.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
6.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
533
Tumor
1.4
435
Tumor
1.2
351
Tumor
1.1
367
Tumor
1.1
393
Tumor
1.0
231
Tumor
1.0
361
Tumor
0.9
357
Tumor
0.9
557
Tumor
0.9
267
Tumor
0.9
411
Tumor
0.8
257
Tumor
0.8
571
Tumor
0.7
451
Tumor
0.7
423
Tumor
0.7
171
Tumor
0.7
123
Tumor
0.7
467
Tumor
0.7
427
Tumor
0.6
573
Tumor
0.6
277
Tumor
0.6
353
Tumor
0.6
463
Tumor
0.6
663
Tumor
0.6
865
Tumor
0.6
635
Tumor
0.6
665
Tumor
0.6
127
Tumor
0.6
627
Tumor
0.6
341
Tumor
0.6
465
Tumor
0.5
456
Normal
0.5
743
Tumor
0.5
567
Tumor
0.5
187
Tumor
0.5
671
Tumor
0.5
271
Tumor
0.5
391
Tumor
0.5
741
Tumor
0.5
413
Tumor
0.4
443
Tumor
0.4
1041
Tumor
0.4
433
Tumor
0.4
685
Tumor
0.4
957
Tumor
0.4
195
Tumor
0.4
432
Normal
0.4
883
Tumor
0.4
436
Normal
0.4
867
Tumor
0.4
464
Normal
0.4
213
Tumor
0.4
525
Tumor
0.4
272
Normal
0.4
331
Tumor
0.4
145
Tumor
0.4
258
Normal
0.4
468
Normal
0.4
261
Tumor
0.4
445
Tumor
0.4
375
Tumor
0.3
466
Normal
0.3
297
Tumor
0.3
395
Tumor
0.3
388
Normal
0.3
641
Tumor
0.3
185
Tumor
0.3
446
Normal
0.3
147
Tumor
0.3
113
Tumor
0.3
564
Normal
0.3
648
Normal
0.3
141
Tumor
0.3
137
Tumor
0.3
232
Normal
0.3
661
Tumor
0.3
662
Normal
0.3
227
Tumor
0.3
877
Tumor
0.3
431
Tumor
0.3
666
Normal
0.3
387
Tumor
0.2
713
Tumor
0.2
937
Tumor
0.2
386
Normal
0.2
452
Normal
0.2
112
Tumor
0.2
434
Normal
0.2
196
Normal
0.2
383
Tumor
0.2
217
Tumor
0.2
314
Normal
0.2
132
Normal
0.2
396
Normal
0.2
911
Tumor
0.2
191
Tumor
0.2
148
Normal
0.2
161
Tumor
0.2
815
Tumor
0.2
136
Normal
0.2
376
Normal
0.2
192
Normal
0.2
366
Normal
0.2
285
Tumor
0.2
824
Normal
0.1
864
Normal
0.1
222
Normal
0.1
313
Tumor
0.1
981
Tumor
0.1
477
Tumor
0.1
221
Tumor
0.1
394
Normal
0.1
722
Normal
0.1
953
Tumor
0.1
421
Tumor
0.1
135
Tumor
0.1
343
Tumor
0.1
617
Tumor
0.1
615
Tumor
0.1
362
Normal
0.1
444
Normal
0.1
146
Normal
0.1
428
Normal
0.1
866
Normal
0.1
327
Tumor
0.1
172
Normal
0.1
664
Normal
0.1
878
Normal
0.1
384
Normal
0.1
1027
Tumor
0.1
365
Tumor
0.1
851
Tumor
0.1
642
Normal
0.1
262
Normal
0.0
951
Tumor
0.0
214
Normal
0.0
368
Normal
0.0
186
Normal
0.0
967
Tumor
0.0
647
Tumor
0.0
568
Normal
0.0
138
Normal
0.0
672
Normal
0.0
925
Tumor
0.0
553
Tumor
0.0
818
Normal
0.0
455
Tumor
0.0
352
Normal
0.0
358
Normal
0.0
517
Tumor
0.0
537
Tumor
0.0
1021
Tumor
0.0
312
Normal
0.0
616
Normal
0.0
422
Normal
0.0
385
Tumor
0.0
721
Tumor
0.0
574
Normal
0.0
414
Normal
0.0
618
Normal
0.0
983
Tumor
0.0
278
Normal
0.0
862
Normal
0.0
128
Normal
0.0
114
Normal
0.0
162
Normal
0.0
188
Normal
0.0
1013
Tumor
0.0
481
Tumor
0.0
354
Normal
0.0
913
Tumor
0.0
268
Normal
-0.1
513
Tumor
-0.1
124
Normal
-0.1
125
Tumor
-0.1
628
Normal
-0.1
563
Tumor
-0.1
426
Normal
-0.1
473
Tumor
-0.1
218
Normal
-0.1
745
Tumor
-0.1
126
Normal
-0.1
861
Tumor
-0.1
356
Normal
-0.1
392
Normal
-0.1
636
Normal
-0.1
977
Tumor
-0.1
965
Tumor
-0.1
724
Normal
-0.1
1043
Tumor
-0.1
912
Normal
-0.1
572
Normal
-0.1
874
Normal
-0.1
881
Tumor
-0.1
223
Tumor
-0.1
873
Tumor
-0.1
715
Tumor
-0.1
342
Normal
-0.1
742
Normal
-0.1
814
Normal
-0.1
816
Normal
-0.2
863
Tumor
-0.2
298
Normal
-0.2
914
Normal
-0.2
424
Normal
-0.2
111
Normal
-0.2
723
Tumor
-0.2
1016
Normal
-0.2
756
Normal
-0.2
311
Tumor
-0.2
1025
Tumor
-0.2
527
Tumor
-0.2
332
Normal
-0.2
727
Tumor
-0.2
363
Tumor
-0.2
491
Tumor
-0.2
915
Tumor
-0.2
286
Normal
-0.2
558
Normal
-0.2
882
Normal
-0.2
755
Tumor
-0.2
535
Tumor
-0.2
416
Normal
-0.3
982
Normal
-0.3
858
Normal
-0.3
744
Normal
-0.3
462
Normal
-0.3
425
Tumor
-0.3
884
Normal
-0.3
142
Normal
-0.3
471
Tumor
-0.3
461
Tumor
-0.3
344
Normal
-0.3
923
Tumor
-0.3
738
Normal
-0.3
328
Normal
-0.3
1014
Normal
-0.3
728
Normal
-0.3
786
Normal
-0.3
868
Normal
-0.3
482
Normal
-0.3
695
Tumor
-0.3
523
Tumor
-0.3
696
Normal
-0.4
355
Tumor
-0.4
1015
Tumor
-0.4
228
Normal
-0.4
686
Normal
-0.4
483
Tumor
-0.4
364
Normal
-0.4
813
Tumor
-0.4
447
Tumor
-0.4
526
Normal
-0.4
1042
Normal
-0.4
1028
Normal
-0.4
697
Tumor
-0.4
823
Tumor
-0.4
857
Tumor
-0.4
746
Normal
-0.5
785
Tumor
-0.5
1032
Normal
-0.5
852
Normal
-0.5
698
Normal
-0.5
516
Normal
-0.5
921
Tumor
-0.5
944
Normal
-0.5
518
Normal
-0.5
778
Normal
-0.5
777
Tumor
-0.5
497
Tumor
-0.5
472
Normal
-0.5
716
Normal
-0.5
1022
Normal
-0.5
546
Normal
-0.5
978
Normal
-0.5
212
Normal
-0.5
714
Normal
-0.5
284
Normal
-0.6
817
Tumor
-0.6
964
Normal
-0.6
412
Normal
-0.6
474
Normal
-0.6
131
Tumor
-0.6
938
Normal
-0.6
1026
Normal
-0.6
1045
Tumor
-0.6
1031
Tumor
-0.6
224
Normal
-0.6
976
Normal
-0.6
493
Tumor
-0.6
534
Normal
-0.6
524
Normal
-0.6
737
Tumor
-0.7
528
Normal
-0.7
514
Normal
-0.7
984
Normal
-0.7
448
Normal
-0.7
515
Tumor
-0.7
955
Tumor
-0.7
952
Normal
-0.7
536
Normal
-0.8
975
Tumor
-0.8
487
Tumor
-0.8
956
Normal
-0.8
963
Tumor
-0.8
554
Normal
-0.8
966
Normal
-0.8
968
Normal
-0.8
478
Normal
-0.8
283
Tumor
-0.8
211
Tumor
-0.9
918
Normal
-0.9
926
Normal
-0.9
958
Normal
-0.9
484
Normal
-0.9
415
Tumor
-0.9
1044
Normal
-0.9
954
Normal
-1.0
1046
Normal
-1.0
943
Tumor
-1.0
545
Tumor
-1.0
494
Normal
-1.0
916
Normal
-1.0
922
Normal
-1.0
924
Normal
-1.1
498
Normal
-1.1
488
Normal
-1.1
492
Normal
-1.2
917
Tumor
-1.2
538
Normal
-1.2
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
