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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
IFNAR2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
47.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
41.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
40.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
36.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
34.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
31.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
30.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
28.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
28.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
27.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
26.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
26.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
26.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
26.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
26.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
25.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
24.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
24.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
24.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
24.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
23.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
23.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
23.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
22.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
22.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
21.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
21.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
21.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
21.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
21.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
21.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
21.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
21.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
20.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
20.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
20.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
20.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
20.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
20.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
20.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
19.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
19.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
19.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
19.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
18.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
18.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
18.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
18.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
18.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
18.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
18.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
18.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
18.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
18.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
18.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
17.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
17.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
17.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
17.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
17.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
17.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
17.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
16.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
16.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
16.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
16.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
16.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
16.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
16.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
16.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
16.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
16.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
16.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
16.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
16.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
16.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
16.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
15.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
15.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
15.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
15.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
15.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
15.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
15.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
15.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
15.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
14.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
14.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
14.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
14.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
14.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
14.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
14.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
14.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
14.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
14.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
14.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
14.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
14.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
14.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
14.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
14.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
14.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
14.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
14.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
14.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
13.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
13.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
13.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
13.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
13.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
13.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
13.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
13.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
13.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
13.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
13.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
13.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
13.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
13.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
13.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
13.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
13.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
13.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
13.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
13.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
12.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
12.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
12.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
12.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
12.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
12.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
12.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
12.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
12.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
12.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
12.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
12.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
12.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
12.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
12.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
12.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
12.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
12.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
12.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
12.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
12.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
12.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
12.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
12.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
11.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
11.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
11.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
11.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
11.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
11.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
11.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
11.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
11.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
11.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
11.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
11.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
11.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
11.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
11.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
11.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
11.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
11.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
11.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
11.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
10.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
10.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
10.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
10.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
10.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
10.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
10.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
10.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
10.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
10.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
10.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
10.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
10.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
10.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
10.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
10.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
10.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
10.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
10.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
10.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
10.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
10.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
10.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
10.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
10.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
9.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
9.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
9.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
9.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
9.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
9.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
9.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
9.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
9.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
9.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
9.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
9.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
9.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
9.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
9.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
9.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
9.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
9.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
9.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
9.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
9.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
9.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
9.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
9.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
9.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
9.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
9.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
9.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
9.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
9.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
9.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
9.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
9.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
9.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
9.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
9.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
8.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
8.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
8.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
8.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
8.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
8.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
8.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
8.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
8.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
8.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
8.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
8.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
8.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
8.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
8.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
8.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
8.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
8.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
8.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
8.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
8.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
8.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
8.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
8.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
8.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
8.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
8.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
8.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
8.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
8.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
7.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
7.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
7.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
7.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
7.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
7.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
7.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
7.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
7.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
7.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
7.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
7.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
7.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
7.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
7.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
7.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
7.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
7.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
7.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
7.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
7.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
7.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
7.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
7.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
7.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
7.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
6.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
6.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
6.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
6.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
6.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
6.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
6.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
6.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
6.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
6.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
6.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
6.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
6.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
6.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
6.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
6.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
6.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
6.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
6.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
5.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
5.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
5.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
5.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
5.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
5.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
5.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
5.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
5.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
5.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
5.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
5.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
5.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
5.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
5.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
5.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
5.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
5.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
5.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
5.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
5.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
4.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
4.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
4.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
3.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
3.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
IFNAR2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.6
Number of samples
231
Samples
Sample
Description
TPM
DO48720
0 years, female, NA, stage:2, alive, 570 days
38.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
32.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
30.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
30.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
30.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
29.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
28.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
28.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
27.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
26.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
26.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
25.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
24.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
22.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
22.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
22.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
22.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
21.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
21.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
21.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
20.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
20.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
20.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
19.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
19.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
19.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
19.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
19.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
19.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
18.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
18.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
18.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
18.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
18.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
18.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
18.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
18.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
18.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
17.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
17.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
17.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
17.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
17.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
17.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
16.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
16.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
16.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
16.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
16.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
16.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
15.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
15.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
15.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
15.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
15.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
15.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
15.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
15.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
15.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
15.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
15.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
15.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
15.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
15.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
15.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
14.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
14.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
14.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
14.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
14.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
14.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
14.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
14.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
14.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
14.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
14.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
14.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
14.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
13.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
13.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
13.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
13.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
13.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
13.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
13.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
13.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
13.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
13.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
13.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
13.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
13.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
13.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
13.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
13.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
12.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
12.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
12.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
12.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
12.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
12.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
12.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
12.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
12.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
12.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
12.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
12.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
11.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
11.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
11.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
11.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
11.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
11.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
11.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
11.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
11.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
11.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
11.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
11.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
11.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
11.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
11.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
11.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
11.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
11.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
11.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
11.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
10.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
10.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
10.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
10.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
10.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
10.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
10.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
10.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
10.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
10.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
10.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
10.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
10.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
10.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
10.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
10.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
10.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
10.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
10.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
10.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
10.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
9.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
9.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
9.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
9.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
9.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
9.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
9.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
9.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
9.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
9.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
9.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
9.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
9.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
9.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
9.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
9.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
9.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
9.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
9.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
9.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
8.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
8.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
8.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
8.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
8.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
8.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
8.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
8.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
8.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
8.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
8.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
8.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
8.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
8.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
8.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
7.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
7.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
7.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
7.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
7.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
7.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
7.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
7.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
7.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
7.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
7.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
7.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
7.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
7.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
7.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
7.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
7.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
7.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
7.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
7.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
7.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
7.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
6.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
6.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
6.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
6.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
6.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
6.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
6.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
6.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
5.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
5.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
5.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
5.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
5.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
4.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
4.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
4.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
3.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
3.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
3.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
3.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
2.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
2.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
2.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
2.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
533
Tumor
2.2
921
Tumor
1.1
1021
Tumor
1.1
721
Tumor
1.0
445
Tumor
1.0
737
Tumor
1.0
421
Tumor
1.0
413
Tumor
0.9
573
Tumor
0.9
817
Tumor
0.8
1016
Normal
0.7
527
Tumor
0.7
211
Tumor
0.7
635
Tumor
0.7
917
Tumor
0.6
863
Tumor
0.6
393
Tumor
0.6
185
Tumor
0.5
661
Tumor
0.5
922
Normal
0.5
271
Tumor
0.5
538
Normal
0.5
391
Tumor
0.5
918
Normal
0.5
434
Normal
0.5
926
Normal
0.5
924
Normal
0.5
443
Tumor
0.5
1026
Normal
0.4
426
Normal
0.4
283
Tumor
0.4
813
Tumor
0.4
883
Tumor
0.4
477
Tumor
0.4
978
Normal
0.4
851
Tumor
0.4
916
Normal
0.4
545
Tumor
0.4
1014
Normal
0.4
982
Normal
0.4
713
Tumor
0.4
187
Tumor
0.4
815
Tumor
0.4
975
Tumor
0.3
493
Tumor
0.3
395
Tumor
0.3
277
Tumor
0.3
422
Normal
0.3
433
Tumor
0.3
231
Tumor
0.3
715
Tumor
0.3
428
Normal
0.3
881
Tumor
0.3
365
Tumor
0.3
951
Tumor
0.3
1028
Normal
0.3
414
Normal
0.3
223
Tumor
0.2
785
Tumor
0.2
984
Normal
0.2
852
Normal
0.2
671
Tumor
0.2
557
Tumor
0.2
915
Tumor
0.2
873
Tumor
0.2
257
Tumor
0.2
396
Normal
0.2
861
Tumor
0.2
483
Tumor
0.2
563
Tumor
0.2
311
Tumor
0.2
355
Tumor
0.2
461
Tumor
0.1
268
Normal
0.1
386
Normal
0.1
131
Tumor
0.1
363
Tumor
0.1
627
Tumor
0.1
387
Tumor
0.1
227
Tumor
0.1
966
Normal
0.1
424
Normal
0.1
1041
Tumor
0.1
392
Normal
0.1
137
Tumor
0.1
537
Tumor
0.1
925
Tumor
0.1
983
Tumor
0.1
375
Tumor
0.1
567
Tumor
0.1
367
Tumor
0.1
923
Tumor
0.1
471
Tumor
0.1
212
Normal
0.1
963
Tumor
0.1
824
Normal
0.1
138
Normal
0.1
554
Normal
0.1
385
Tumor
0.1
685
Tumor
0.1
285
Tumor
0.1
858
Normal
0.1
388
Normal
0.1
818
Normal
0.1
383
Tumor
0.1
866
Normal
0.1
911
Tumor
0.1
286
Normal
0.1
553
Tumor
0.0
568
Normal
0.0
423
Tumor
0.0
1022
Normal
0.0
615
Tumor
0.0
394
Normal
0.0
1025
Tumor
0.0
444
Normal
0.0
867
Tumor
0.0
366
Normal
0.0
823
Tumor
0.0
816
Normal
0.0
136
Normal
0.0
436
Normal
0.0
914
Normal
0.0
312
Normal
0.0
147
Tumor
0.0
228
Normal
0.0
662
Normal
0.0
1015
Tumor
-0.1
868
Normal
-0.1
977
Tumor
-0.1
446
Normal
-0.1
857
Tumor
-0.1
874
Normal
-0.1
1042
Normal
-0.1
727
Tumor
-0.1
368
Normal
-0.1
262
Normal
-0.1
862
Normal
-0.1
494
Normal
-0.1
574
Normal
-0.1
864
Normal
-0.1
714
Normal
-0.1
188
Normal
-0.1
1031
Tumor
-0.1
647
Tumor
-0.1
435
Tumor
-0.1
814
Normal
-0.1
865
Tumor
-0.1
284
Normal
-0.1
954
Normal
-0.1
145
Tumor
-0.2
376
Normal
-0.2
141
Tumor
-0.2
482
Normal
-0.2
636
Normal
-0.2
272
Normal
-0.2
722
Normal
-0.2
132
Normal
-0.2
258
Normal
-0.2
498
Normal
-0.2
696
Normal
-0.2
1032
Normal
-0.2
331
Tumor
-0.2
171
Tumor
-0.2
572
Normal
-0.2
716
Normal
-0.2
686
Normal
-0.2
665
Tumor
-0.2
361
Tumor
-0.2
474
Normal
-0.2
741
Tumor
-0.2
327
Tumor
-0.2
695
Tumor
-0.2
571
Tumor
-0.2
297
Tumor
-0.2
976
Normal
-0.2
913
Tumor
-0.2
878
Normal
-0.2
267
Tumor
-0.2
224
Normal
-0.2
738
Normal
-0.2
628
Normal
-0.2
744
Normal
-0.2
432
Normal
-0.2
411
Tumor
-0.2
937
Tumor
-0.2
642
Normal
-0.2
462
Normal
-0.2
938
Normal
-0.2
618
Normal
-0.2
427
Tumor
-0.3
488
Normal
-0.3
362
Normal
-0.3
956
Normal
-0.3
641
Tumor
-0.3
472
Normal
-0.3
481
Tumor
-0.3
564
Normal
-0.3
664
Normal
-0.3
558
Normal
-0.3
952
Normal
-0.3
412
Normal
-0.3
146
Normal
-0.3
672
Normal
-0.3
617
Tumor
-0.3
478
Normal
-0.3
135
Tumor
-0.3
278
Normal
-0.3
884
Normal
-0.3
967
Tumor
-0.3
161
Tumor
-0.3
142
Normal
-0.3
724
Normal
-0.3
746
Normal
-0.3
648
Normal
-0.3
431
Tumor
-0.3
666
Normal
-0.4
965
Tumor
-0.4
755
Tumor
-0.4
415
Tumor
-0.4
778
Normal
-0.4
728
Normal
-0.4
186
Normal
-0.4
943
Tumor
-0.4
981
Tumor
-0.4
162
Normal
-0.4
546
Normal
-0.4
261
Tumor
-0.4
882
Normal
-0.4
425
Tumor
-0.4
663
Tumor
-0.4
953
Tumor
-0.4
877
Tumor
-0.4
955
Tumor
-0.4
616
Normal
-0.4
172
Normal
-0.4
298
Normal
-0.4
745
Tumor
-0.5
484
Normal
-0.5
332
Normal
-0.5
384
Normal
-0.5
912
Normal
-0.5
491
Tumor
-0.5
148
Normal
-0.5
497
Tumor
-0.5
314
Normal
-0.5
1013
Tumor
-0.6
416
Normal
-0.6
473
Tumor
-0.6
968
Normal
-0.6
964
Normal
-0.6
364
Normal
-0.6
232
Normal
-0.6
356
Normal
-0.7
742
Normal
-0.7
492
Normal
-0.7
534
Normal
-0.7
944
Normal
-0.8
528
Normal
-0.8
957
Tumor
-0.8
313
Tumor
-0.8
328
Normal
-0.8
487
Tumor
-0.8
743
Tumor
-0.9
723
Tumor
-1.0
958
Normal
-1.0
1027
Tumor
-1.1
777
Tumor
-1.1
756
Normal
-1.6
786
Normal
-1.7
351
Tumor
N/A
352
Normal
N/A
111
Normal
N/A
353
Tumor
N/A
112
Tumor
N/A
354
Normal
N/A
113
Tumor
N/A
114
Normal
N/A
357
Tumor
N/A
358
Normal
N/A
123
Tumor
N/A
124
Normal
N/A
125
Tumor
N/A
126
Normal
N/A
127
Tumor
N/A
128
Normal
N/A
1044
Normal
N/A
1043
Tumor
N/A
1046
Normal
N/A
1045
Tumor
N/A
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
513
Tumor
N/A
514
Normal
N/A
515
Tumor
N/A
516
Normal
N/A
517
Tumor
N/A
518
Normal
N/A
523
Tumor
N/A
524
Normal
N/A
525
Tumor
N/A
526
Normal
N/A
535
Tumor
N/A
536
Normal
N/A
447
Tumor
N/A
448
Normal
N/A
451
Tumor
N/A
452
Normal
N/A
213
Tumor
N/A
455
Tumor
N/A
697
Tumor
N/A
214
Normal
N/A
456
Normal
N/A
698
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
341
Tumor
N/A
221
Tumor
N/A
342
Normal
N/A
463
Tumor
N/A
222
Normal
N/A
343
Tumor
N/A
464
Normal
N/A
344
Normal
N/A
465
Tumor
N/A
466
Normal
N/A
467
Tumor
N/A
468
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.