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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
21.6
nTPM
HPA Brain:
73.6
nTPM
GTEx:
21.6
nTPM
FANTOM5:
15.6
Scaled Tags Per Million
Pig:
74.0
nTPM
Mouse:
141.5
nTPM
Allen mouse:
13.9
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
73.6
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 52.2
2219
Male, age 76, both hemispheres
67.2
2666
Male, age 74, left hemisphere
63.2
1827
Male, age 72, unknown
58.4
2411
Female, age 72, unknown
58.2
2019
Male, age 18, unknown
53.7
1833
Male, age 53, unknown
47.2
2828
Female, age 72, unknown
46.9
2586
Male, age 75, left hemisphere
43.7
1870
Female, age 42, unknown
41.8
1830
Male, age 51, unknown
41.6
Dorsal raphe nucleus nTPM: 47.0
2298
Female, age 72, unknown
54.7
2047
Male, age 72, unknown
51.0
1828
Male, age 53, unknown
49.1
2750
Male, age 76, both hemispheres
46.1
2016
Female, age 72, unknown
34.0
Inferior colliculus nTPM: 44.8
1848
Female, age 42, unknown
50.4
2849
Male, age 72, unknown
48.1
2097
Female, age 72, unknown
40.6
1890
Male, age 53, unknown
40.3
Median raphe nucleus nTPM: 67.1
2220
Male, age 76, midline
67.1
Periaquaductal grey, anterior nTPM: 55.4
1795
Male, age 51, unknown
59.0
1947
Male, age 18, unknown
58.7
2502
Female, age 75, unknown
48.4
Periaquaductal grey, dorsal nTPM: 43.7
2850
Male, age 76, both hemispheres
46.2
1840
Male, age 53, unknown
44.0
2464
Female, age 72, unknown
42.8
1831
Male, age 72, unknown
41.6
Periaquaductal grey, lateral nTPM: 42.1
2272
Male, age 74, both hemispheres
48.9
2053
Male, age 18, unknown
40.1
2140
Male, age 76, both hemispheres
37.3
Pretectal area nTPM: 61.3
1944
Female, age 72, unknown
85.4
1816
Male, age 51, unknown
78.9
1817
Female, age 42, unknown
78.9
2007
Male, age 72, unknown
78.3
1815
Male, age 53, unknown
67.0
2667
Female, age 75, unknown
66.8
2224
Female, age 72, unknown
52.1
2407
Male, age 75, both hemispheres
49.7
2825
Male, age 18, unknown
44.6
2273
Male, age 74, both hemispheres
40.4
2316
Male, age 76, right hemisphere
32.6
Red nucleus nTPM: 42.6
2785
Male, age 18, unknown
52.1
1821
Female, age 72, unknown
49.9
2584
Male, age 75, left hemisphere
48.4
2725
Female, age 75, unknown
47.4
2823
Male, age 76, right hemisphere
43.7
1954
Female, age 42, unknown
43.2
2588
Male, age 74, left hemisphere
40.6
1904
Male, age 53, unknown
38.1
2227
Male, age 72, unknown
37.7
1865
Male, age 51, unknown
37.3
2769
Male, age 72, unknown
36.6
2503
Female, age 72, unknown
36.2
Substantia nigra nTPM: 73.6
1916
Female, age 42, unknown
104.2
1941
Male, age 53, unknown
95.9
1851
Male, age 51, unknown
80.3
2665
Male, age 74, both hemispheres
78.0
2241
Male, age 72, unknown
76.5
1889
Female, age 72, unknown
74.3
2699
Male, age 18, unknown
63.3
2409
Female, age 72, unknown
60.2
2590
Female, age 75, unknown
59.2
2583
Male, age 75, right hemisphere
44.4
Superior colliculus nTPM: 48.3
2087
Female, age 72, unknown
63.1
1796
Male, age 53, unknown
57.6
2261
Male, age 18, unknown
54.2
2668
Female, age 75, unknown
51.6
1895
Male, age 76, right hemisphere
48.2
1839
Male, age 51, unknown
47.2
2664
Male, age 75, both hemispheres
45.8
2587
Male, age 74, left hemisphere
42.2
1913
Female, age 42, unknown
40.0
1995
Male, age 72, unknown
33.7
Ventral tegmental area nTPM: 62.6
2218
Male, age 76, both hemispheres
92.3
2410
Female, age 72, unknown
75.2
1915
Female, age 42, unknown
64.3
1942
Male, age 51, unknown
52.9
2223
Female, age 72, unknown
50.3
2021
Male, age 53, unknown
41.0
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
21.6
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 21.6
Samples: 139
Max nTPM: 90.7
Min nTPM: 5.4
Std nTPM: 15.6
Median nTPM: 16.1
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
90.7
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
86.4
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
78.8
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
71.3
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
53.5
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
50.2
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
49.7
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
46.7
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
45.3
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
42.7
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
41.7
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
41.4
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
40.4
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
40.1
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
40.0
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
39.8
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
39.7
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
39.3
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
37.5
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
36.9
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
36.8
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
36.2
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
34.2
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
33.3
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
33.1
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
32.9
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
32.8
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
32.8
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
32.8
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
32.7
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
32.5
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
31.9
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
31.8
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
31.7
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
31.3
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
30.8
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
30.2
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
29.6
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
27.2
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
26.9
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
26.4
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
26.3
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
26.1
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
26.0
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
25.7
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
23.9
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
23.7
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
22.9
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
22.8
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
22.6
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
21.9
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
21.8
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
21.2
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
21.1
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
20.7
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
20.6
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
20.1
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
20.1
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
20.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
19.9
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
18.6
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
18.4
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
18.2
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
17.8
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
17.5
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
17.3
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
17.1
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
16.4
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
16.3
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
16.1
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
16.0
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
15.3
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
15.2
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
15.2
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
15.1
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
15.0
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
14.8
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
14.6
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
14.4
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
14.3
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
14.3
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
13.8
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
13.7
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
13.3
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
13.1
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
12.8
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
12.6
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
12.6
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
12.4
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
11.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
11.8
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
11.7
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
11.4
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
11.3
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
11.3
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
11.2
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
11.1
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
10.5
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
10.3
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
10.3
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
10.2
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
10.2
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
10.1
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
10.1
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
10.1
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
10.0
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
10.0
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
9.9
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
9.9
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
9.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
9.5
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
9.4
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
9.3
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
9.1
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
9.0
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
9.0
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
8.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
8.7
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
8.6
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
8.6
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
8.6
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
8.5
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
8.5
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
8.4
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
8.2
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
8.2
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
8.2
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
8.0
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
7.9
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
7.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
7.7
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
7.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
7.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
7.0
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
6.7
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
6.6
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
6.4
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
5.8
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
5.4
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
141.5
Mouse sample
Sample description
nTPM
Midbrain nTPM: 141.5
Samples: 4
Max nTPM: 151.3
Min nTPM: 122.5
Sample A
Male
122.5
Sample B
Male
145.7
Sample C
Female
151.3
Sample D
Female
146.4
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.