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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Low
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
25.2
nTPM
HPA Brain:
107.8
nTPM
GTEx:
25.2
nTPM
FANTOM5:
48.3
Scaled Tags Per Million
Pig:
139.9
nTPM
Mouse:
178.3
nTPM
Allen mouse:
18.2
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA011916
Glial cells
Not detected
Neuronal cells
Low
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
107.8
Sample id
Sample description
nTPM
Hippocampus nTPM: 86.2
1898
Male, age 80, left hemisphere
115.1
2621
Female, age 67, right hemisphere
108.5
1855
Male, age 76, left hemisphere
100.2
2148
Female, age 91, left hemisphere
80.4
1911
Female, age 85, right hemisphere
63.6
2529
Female, age 94, left hemisphere
49.1
Dentate gyrus nTPM: 87.1
1927
Female, age 91, both hemispheres
110.5
2010
Male, age 76, both hemispheres
99.0
2530
Female, age 94, left hemisphere
89.6
2246
Female, age 85, both hemispheres
88.2
2528
Male, age 74, both hemispheres
67.5
2531
Female, age 67, both hemispheres
67.4
Entorhinal gyrus nTPM: 85.6
2613
Female, age 94, left hemisphere
115.8
2764
Male, age 80, right hemisphere
103.0
1938
Female, age 85, left hemisphere
99.0
1787
Male, age 76, left hemisphere
87.4
2686
Male, age 75, right hemisphere
59.3
2117
Female, age 91, right hemisphere
48.9
Hippocampus, CA1 nTPM: 94.0
2749
Male, age 80, left hemisphere
163.2
1873
Female, age 85, both hemispheres
106.9
2045
Male, age 76, both hemispheres
73.5
2527
Male, age 74, both hemispheres
69.3
2082
Female, age 91, right hemisphere
57.2
Hippocampus, CA2 nTPM: 87.6
1892
Male, age 76, both hemispheres
121.5
1963
Male, age 80, left hemisphere
116.1
2437
Female, age 94, left hemisphere
83.7
1940
Female, age 85, left hemisphere
70.7
2249
Male, age 74, both hemispheres
69.6
2113
Female, age 91, right hemisphere
64.1
Hippocampus, CA3 nTPM: 88.2
2137
Male, age 80, left hemisphere
114.0
2620
Female, age 94, left hemisphere
94.4
1867
Male, age 76, both hemispheres
90.5
2436
Male, age 74, both hemispheres
86.1
2861
Female, age 67, both hemispheres
78.0
1891
Female, age 85, both hemispheres
66.4
Parahippocampal cortex nTPM: 91.9
2245
Female, age 91, both hemispheres
114.3
1850
Male, age 80, both hemispheres
105.0
1990
Female, age 91, right hemisphere
102.6
2532
Female, age 72, left hemisphere
99.8
1933
Female, age 85, both hemispheres
99.1
2693
Female, age 94, both hemispheres
91.3
2250
Female, age 67, right hemisphere
90.7
2622
Female, age 67, right hemisphere
85.8
2692
Male, age 74, both hemispheres
69.1
2018
Male, age 76, both hemispheres
60.8
Perirhinal gyrus nTPM: 107.8
1847
Female, age 91, left hemisphere
142.1
2521
Female, age 94, right hemisphere
120.0
1794
Male, age 80, right hemisphere
107.3
1841
Female, age 85, right hemisphere
90.4
2848
Male, age 76, right hemisphere
79.3
Subiculum nTPM: 71.6
1901
Male, age 80, both hemispheres
89.6
1977
Female, age 85, both hemispheres
87.8
2438
Female, age 94, left hemisphere
79.6
2619
Male, age 74, both hemispheres
73.9
2042
Male, age 76, both hemispheres
51.7
2729
Female, age 91, right hemisphere
47.2
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
25.2
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 25.2
Samples: 197
Max nTPM: 97.9
Min nTPM: 7.1
Std nTPM: 15.0
Median nTPM: 20.7
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
97.9
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
65.9
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
64.8
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
63.8
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
62.4
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
59.6
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
58.2
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
56.3
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
55.9
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
55.4
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
55.1
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
55.1
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
53.8
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
52.9
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
50.7
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
50.1
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
49.5
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
48.7
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
48.3
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
47.9
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
47.1
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
46.9
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
46.5
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
45.7
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
45.1
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
44.5
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
43.1
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
42.2
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
41.9
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
41.5
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
41.0
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
40.4
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
40.4
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
40.1
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
39.4
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
39.1
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
38.5
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
36.6
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
36.2
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
35.9
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
35.8
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
35.7
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
35.5
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
35.5
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
34.9
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
34.0
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
33.8
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
33.7
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
33.6
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
33.5
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
33.3
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
33.3
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
32.6
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
32.2
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
32.1
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
30.8
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
30.7
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
30.2
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
30.2
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
29.6
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
29.5
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
28.9
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
28.9
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
28.7
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
28.1
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
28.0
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
27.9
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
27.8
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
27.5
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
27.3
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
27.0
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
26.8
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
26.5
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
26.5
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
26.0
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
25.8
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
25.6
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
25.6
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
25.3
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
25.0
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
24.9
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
24.5
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
24.5
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
24.4
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
24.1
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
23.8
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
23.6
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
23.4
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
23.3
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
22.6
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
22.3
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
22.1
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
22.1
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
21.2
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
21.0
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
20.9
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
20.9
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
20.7
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
20.7
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
20.7
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
20.5
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
20.3
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
20.2
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
20.1
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
20.1
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
19.9
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
19.7
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
19.4
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
19.2
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
19.1
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
18.9
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
18.7
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
18.6
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
18.5
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
18.3
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
18.1
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
18.0
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
17.6
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
17.6
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
17.1
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
17.0
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
16.9
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
16.7
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
16.7
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
16.6
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
16.5
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
16.5
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
16.4
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
16.4
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
16.3
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
16.3
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
16.3
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
16.2
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
16.0
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
15.8
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
15.7
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
15.2
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
15.0
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
14.9
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
14.7
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
14.6
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
14.4
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
13.9
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
13.8
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
13.4
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
13.3
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
13.0
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
13.0
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
12.8
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
12.7
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
12.6
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
12.6
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
12.6
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
12.5
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
12.4
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
12.2
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
12.1
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
12.0
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
12.0
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
11.9
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
11.9
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
11.9
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
11.9
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
11.8
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
11.6
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
11.5
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
11.2
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
11.2
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
11.1
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
11.0
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
10.9
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
10.8
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
10.8
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
10.8
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
10.6
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
10.5
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
10.4
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
10.2
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
10.0
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
9.9
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
9.8
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
9.8
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
9.7
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
9.7
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
9.6
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
9.6
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
9.4
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
9.1
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
9.1
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
8.9
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
8.9
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
8.3
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
8.0
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
7.8
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
7.8
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
7.6
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
7.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
178.3
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 168.1
Samples: 4
Max nTPM: 219.1
Min nTPM: 144.0
Sample A
Male
144.0
Sample B
Male
149.6
Sample C
Female
159.8
Sample D
Female
219.1
Hippocampal formation nTPM: 178.3
Samples: 4
Max nTPM: 211.8
Min nTPM: 149.3
Sample A
Male
149.3
Sample B
Male
199.8
Sample C
Female
211.8
Sample D
Female
152.3
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.