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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FBXW5 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
48.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
190.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
186.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
179.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
165.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
149.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
146.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
124.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
124.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
119.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
117.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
110.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
103.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
99.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
98.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
98.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
98.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
95.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
95.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
94.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
94.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
94.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
93.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
92.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
90.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
89.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
89.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
88.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
87.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
87.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
87.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
85.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
82.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
82.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
80.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
78.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
78.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
78.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
78.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
77.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
77.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
77.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
76.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
75.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
74.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
74.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
74.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
74.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
74.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
74.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
73.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
73.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
72.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
72.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
72.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
72.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
71.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
71.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
71.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
71.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
70.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
69.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
67.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
67.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
67.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
67.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
67.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
66.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
66.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
66.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
66.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
66.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
65.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
65.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
65.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
64.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
63.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
63.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
63.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
63.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
62.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
62.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
62.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
62.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
61.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
61.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
61.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
61.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
61.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
61.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
61.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
60.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
60.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
60.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
59.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
59.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
59.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
59.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
59.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
59.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
58.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
58.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
57.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
57.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
57.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
57.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
57.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
56.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
56.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
56.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
56.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
55.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
55.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
55.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
55.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
54.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
54.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
54.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
54.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
54.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
54.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
54.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
54.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
53.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
53.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
53.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
53.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
53.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
52.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
52.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
52.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
52.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
52.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
52.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
52.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
51.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
51.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
51.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
51.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
51.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
51.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
50.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
50.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
50.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
49.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
49.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
49.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
49.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
49.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
49.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
49.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
49.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
49.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
49.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
49.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
49.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
49.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
48.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
48.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
48.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
48.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
48.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
48.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
48.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
47.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
47.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
47.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
46.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
46.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
46.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
46.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
46.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
45.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
45.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
45.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
45.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
45.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
45.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
44.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
44.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
44.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
44.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
44.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
43.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
43.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
43.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
43.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
43.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
43.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
43.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
42.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
42.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
42.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
42.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
42.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
42.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
42.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
42.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
42.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
42.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
42.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
41.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
41.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
41.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
40.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
40.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
40.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
40.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
40.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
40.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
40.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
39.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
39.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
39.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
39.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
39.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
39.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
39.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
39.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
38.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
38.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
38.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
38.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
38.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
38.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
38.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
38.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
38.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
37.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
37.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
37.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
37.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
37.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
37.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
37.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
37.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
37.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
36.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
36.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
36.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
36.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
36.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
35.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
35.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
35.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
35.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
35.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
34.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
34.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
34.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
34.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
34.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
34.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
34.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
34.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
33.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
33.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
33.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
33.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
33.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
32.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
32.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
32.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
32.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
32.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
31.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
31.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
31.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
31.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
31.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
31.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
31.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
31.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
31.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
31.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
30.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
30.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
30.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
30.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
30.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
30.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
30.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
30.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
29.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
29.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
29.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
29.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
29.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
28.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
28.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
28.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
27.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
27.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
27.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
27.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
27.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
27.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
27.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
27.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
26.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
26.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
26.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
26.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
25.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
25.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
25.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
24.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
24.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
24.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
24.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
24.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
24.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
24.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
23.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
23.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
23.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
23.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
23.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
22.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
22.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
22.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
21.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
21.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
20.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
20.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
19.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
19.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
18.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
18.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
18.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
18.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
17.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
17.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
16.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
15.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
14.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
14.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
14.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
14.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
13.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
12.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
10.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
10.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
9.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
9.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
8.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
6.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
6.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
6.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
6.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
6.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
6.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
5.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
4.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
2.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FBXW5 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
53.1
Number of samples
231
Samples
Sample
Description
TPM
DO45209
0 years, male, NA, stage:4, alive, 1350 days
214.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
146.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
124.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
123.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
123.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
104.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
103.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
103.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
102.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
102.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
99.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
93.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
90.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
89.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
89.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
88.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
85.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
85.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
85.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
84.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
83.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
83.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
82.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
81.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
79.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
79.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
77.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
76.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
75.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
75.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
75.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
74.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
73.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
73.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
71.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
71.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
70.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
69.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
68.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
67.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
67.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
67.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
67.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
67.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
67.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
66.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
66.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
65.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
65.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
64.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
64.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
64.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
63.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
62.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
61.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
61.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
61.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
60.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
60.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
60.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
59.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
59.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
59.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
58.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
58.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
58.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
58.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
58.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
58.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
58.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
58.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
57.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
57.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
57.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
56.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
56.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
55.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
55.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
55.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
54.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
54.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
53.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
53.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
53.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
53.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
53.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
52.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
52.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
52.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
52.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
52.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
52.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
52.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
51.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
51.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
51.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
51.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
51.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
51.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
51.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
51.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
50.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
50.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
50.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
50.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
50.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
50.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
49.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
49.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
49.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
49.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
49.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
49.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
49.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
49.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
48.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
48.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
48.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
48.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
48.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
47.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
47.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
47.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
47.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
47.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
47.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
46.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
46.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
46.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
46.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
46.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
46.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
46.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
46.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
45.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
45.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
45.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
44.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
44.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
44.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
44.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
44.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
43.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
43.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
43.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
43.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
43.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
42.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
42.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
42.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
42.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
42.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
42.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
42.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
42.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
41.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
40.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
40.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
40.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
40.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
40.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
40.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
40.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
40.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
40.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
40.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
40.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
40.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
39.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
39.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
39.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
39.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
39.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
38.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
38.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
38.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
37.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
37.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
37.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
37.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
37.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
37.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
37.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
37.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
36.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
36.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
36.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
36.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
36.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
36.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
36.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
35.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
35.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
35.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
34.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
34.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
34.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
33.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
33.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
33.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
33.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
33.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
32.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
32.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
31.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
31.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
31.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
31.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
31.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
31.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
31.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
30.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
30.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
30.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
29.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
28.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
28.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
28.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
28.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
27.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
27.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
27.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
27.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
26.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
26.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
24.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
22.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
22.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
21.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
19.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
17.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
343
Tumor
1.0
721
Tumor
0.9
391
Tumor
0.9
955
Tumor
0.7
978
Normal
0.7
956
Normal
0.7
744
Normal
0.6
342
Normal
0.5
286
Normal
0.5
671
Tumor
0.5
1014
Normal
0.5
686
Normal
0.5
1016
Normal
0.5
874
Normal
0.5
858
Normal
0.4
954
Normal
0.4
1022
Normal
0.4
1026
Normal
0.4
824
Normal
0.4
484
Normal
0.4
914
Normal
0.4
917
Tumor
0.4
816
Normal
0.4
1042
Normal
0.4
938
Normal
0.4
231
Tumor
0.4
368
Normal
0.4
361
Tumor
0.4
952
Normal
0.4
672
Normal
0.4
554
Normal
0.3
627
Tumor
0.3
862
Normal
0.3
424
Normal
0.3
568
Normal
0.3
878
Normal
0.3
868
Normal
0.3
428
Normal
0.3
924
Normal
0.3
384
Normal
0.3
884
Normal
0.3
918
Normal
0.3
618
Normal
0.3
414
Normal
0.3
214
Normal
0.3
223
Tumor
0.3
213
Tumor
0.3
1028
Normal
0.3
222
Normal
0.3
926
Normal
0.3
648
Normal
0.3
365
Tumor
0.3
232
Normal
0.2
714
Normal
0.2
864
Normal
0.2
444
Normal
0.2
344
Normal
0.2
362
Normal
0.2
944
Normal
0.2
852
Normal
0.2
737
Tumor
0.2
818
Normal
0.2
823
Tumor
0.2
1044
Normal
0.2
984
Normal
0.2
617
Tumor
0.2
982
Normal
0.2
564
Normal
0.2
916
Normal
0.2
1045
Tumor
0.2
227
Tumor
0.2
882
Normal
0.2
426
Normal
0.2
191
Tumor
0.2
968
Normal
0.2
218
Normal
0.2
217
Tumor
0.2
114
Normal
0.2
976
Normal
0.2
386
Normal
0.2
723
Tumor
0.2
422
Normal
0.2
863
Tumor
0.2
354
Normal
0.2
1046
Normal
0.2
538
Normal
0.1
488
Normal
0.1
1027
Tumor
0.1
366
Normal
0.1
111
Normal
0.1
517
Tumor
0.1
262
Normal
0.1
534
Normal
0.1
746
Normal
0.1
546
Normal
0.1
272
Normal
0.1
912
Normal
0.1
353
Tumor
0.1
341
Tumor
0.1
258
Normal
0.1
128
Normal
0.1
574
Normal
0.1
494
Normal
0.1
492
Normal
0.1
188
Normal
0.1
716
Normal
0.1
666
Normal
0.1
257
Tumor
0.1
196
Normal
0.1
738
Normal
0.1
268
Normal
0.1
922
Normal
0.1
558
Normal
0.1
877
Tumor
0.1
192
Normal
0.1
572
Normal
0.1
518
Normal
0.1
1032
Normal
0.1
528
Normal
0.1
563
Tumor
0.1
221
Tumor
0.1
662
Normal
0.1
923
Tumor
0.1
857
Tumor
0.1
866
Normal
0.0
785
Tumor
0.0
493
Tumor
0.0
434
Normal
0.0
977
Tumor
0.0
468
Normal
0.0
395
Tumor
0.0
925
Tumor
0.0
421
Tumor
0.0
385
Tumor
0.0
376
Normal
0.0
312
Normal
0.0
396
Normal
0.0
573
Tumor
0.0
715
Tumor
0.0
1025
Tumor
0.0
124
Normal
0.0
187
Tumor
0.0
284
Normal
0.0
728
Normal
0.0
698
Normal
0.0
873
Tumor
0.0
722
Normal
0.0
463
Tumor
0.0
358
Normal
0.0
1043
Tumor
0.0
271
Tumor
0.0
571
Tumor
0.0
148
Normal
0.0
375
Tumor
0.0
696
Normal
0.0
224
Normal
-0.1
228
Normal
-0.1
388
Normal
-0.1
628
Normal
-0.1
642
Normal
-0.1
172
Normal
-0.1
392
Normal
-0.1
186
Normal
-0.1
311
Tumor
-0.1
664
Normal
-0.1
983
Tumor
-0.1
615
Tumor
-0.1
665
Tumor
-0.1
425
Tumor
-0.1
867
Tumor
-0.1
526
Normal
-0.1
212
Normal
-0.1
685
Tumor
-0.1
713
Tumor
-0.1
452
Normal
-0.1
967
Tumor
-0.1
616
Normal
-0.1
474
Normal
-0.1
423
Tumor
-0.1
755
Tumor
-0.1
498
Normal
-0.1
1015
Tumor
-0.1
527
Tumor
-0.1
743
Tumor
-0.1
545
Tumor
-0.1
966
Normal
-0.1
497
Tumor
-0.1
298
Normal
-0.1
195
Tumor
-0.1
297
Tumor
-0.1
814
Normal
-0.2
447
Tumor
-0.2
724
Normal
-0.2
636
Normal
-0.2
975
Tumor
-0.2
126
Normal
-0.2
383
Tumor
-0.2
465
Tumor
-0.2
567
Tumor
-0.2
641
Tumor
-0.2
817
Tumor
-0.2
278
Normal
-0.2
943
Tumor
-0.2
786
Normal
-0.2
147
Tumor
-0.2
394
Normal
-0.2
815
Tumor
-0.2
958
Normal
-0.2
861
Tumor
-0.2
742
Normal
-0.2
813
Tumor
-0.2
756
Normal
-0.2
285
Tumor
-0.2
921
Tumor
-0.2
433
Tumor
-0.2
881
Tumor
-0.2
432
Normal
-0.2
964
Normal
-0.2
185
Tumor
-0.2
283
Tumor
-0.2
851
Tumor
-0.2
277
Tumor
-0.2
351
Tumor
-0.2
455
Tumor
-0.2
314
Normal
-0.2
745
Tumor
-0.2
448
Normal
-0.2
981
Tumor
-0.3
413
Tumor
-0.3
865
Tumor
-0.3
516
Normal
-0.3
491
Tumor
-0.3
162
Normal
-0.3
533
Tumor
-0.3
483
Tumor
-0.3
461
Tumor
-0.3
352
Normal
-0.3
267
Tumor
-0.3
913
Tumor
-0.3
553
Tumor
-0.3
467
Tumor
-0.3
953
Tumor
-0.3
777
Tumor
-0.3
427
Tumor
-0.3
663
Tumor
-0.3
911
Tumor
-0.3
937
Tumor
-0.3
915
Tumor
-0.3
557
Tumor
-0.4
695
Tumor
-0.4
514
Normal
-0.4
462
Normal
-0.4
778
Normal
-0.4
464
Normal
-0.4
1021
Tumor
-0.4
965
Tumor
-0.4
113
Tumor
-0.4
125
Tumor
-0.4
332
Normal
-0.4
537
Tumor
-0.4
963
Tumor
-0.4
1041
Tumor
-0.4
357
Tumor
-0.4
513
Tumor
-0.4
487
Tumor
-0.4
127
Tumor
-0.4
456
Normal
-0.5
261
Tumor
-0.5
112
Tumor
-0.5
635
Tumor
-0.5
647
Tumor
-0.5
171
Tumor
-0.5
472
Normal
-0.5
393
Tumor
-0.5
1031
Tumor
-0.5
515
Tumor
-0.5
446
Normal
-0.5
161
Tumor
-0.5
451
Tumor
-0.5
951
Tumor
-0.5
367
Tumor
-0.5
1013
Tumor
-0.6
466
Normal
-0.6
481
Tumor
-0.6
387
Tumor
-0.6
313
Tumor
-0.6
331
Tumor
-0.6
697
Tumor
-0.6
883
Tumor
-0.6
741
Tumor
-0.6
957
Tumor
-0.6
536
Normal
-0.7
436
Normal
-0.7
211
Tumor
-0.7
523
Tumor
-0.7
471
Tumor
-0.7
123
Tumor
-0.8
431
Tumor
-0.8
482
Normal
-0.8
524
Normal
-0.8
477
Tumor
-0.9
661
Tumor
-0.9
525
Tumor
-1.0
478
Normal
-1.1
435
Tumor
-1.1
443
Tumor
-1.2
727
Tumor
-1.2
535
Tumor
-1.2
445
Tumor
-1.3
473
Tumor
-1.5
355
Tumor
N/A
356
Normal
N/A
363
Tumor
N/A
364
Normal
N/A
131
Tumor
N/A
132
Normal
N/A
135
Tumor
N/A
136
Normal
N/A
137
Tumor
N/A
138
Normal
N/A
141
Tumor
N/A
142
Normal
N/A
145
Tumor
N/A
146
Normal
N/A
411
Tumor
N/A
412
Normal
N/A
415
Tumor
N/A
416
Normal
N/A
327
Tumor
N/A
328
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
