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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CDC42SE2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
57.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
57.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
55.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
42.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
42.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
40.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
40.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
38.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
36.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
32.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
30.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
29.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
28.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
26.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
25.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
25.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
25.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
25.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
24.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
24.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
24.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
23.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
22.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
22.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
22.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
21.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
21.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
20.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
20.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
20.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
19.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
19.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
19.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
19.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
18.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
18.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
18.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
18.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
18.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
18.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
17.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
17.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
17.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
17.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
17.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
17.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
17.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
17.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
17.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
17.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
16.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
16.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
16.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
16.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
16.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
16.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
16.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
16.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
16.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
16.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
16.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
16.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
15.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
15.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
15.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
15.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
15.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
15.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
15.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
15.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
15.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
15.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
15.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
15.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
15.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
14.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
14.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
14.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
14.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
14.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
14.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
14.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
14.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
14.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
14.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
14.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
14.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
13.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
13.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
13.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
13.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
13.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
13.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
13.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
13.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
13.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
13.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
13.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
13.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
13.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
13.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
13.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
13.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
13.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
13.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
13.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
13.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
13.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
13.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
12.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
12.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
12.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
12.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
12.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
12.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
12.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
12.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
12.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
12.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
12.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
12.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
12.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
12.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
12.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
11.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
11.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
11.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
11.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
11.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
11.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
11.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
11.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
11.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
11.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
11.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
11.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
11.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
11.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
11.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
11.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
11.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
11.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
11.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
11.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
11.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
11.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
11.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
11.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
11.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
11.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
11.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
11.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
11.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
11.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
11.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
10.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
10.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
10.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
10.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
10.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
10.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
10.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
10.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
10.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
10.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
10.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
10.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
10.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
10.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
10.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
10.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
10.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
10.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
10.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
10.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
10.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
10.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
10.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
10.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
10.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
10.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
10.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
10.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
9.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
9.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
9.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
9.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
9.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
9.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
9.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
9.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
9.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
9.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
9.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
9.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
9.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
9.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
9.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
9.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
9.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
9.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
9.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
9.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
9.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
9.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
9.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
9.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
9.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
9.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
9.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
9.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
9.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
9.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
9.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
8.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
8.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
8.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
8.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
8.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
8.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
8.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
8.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
8.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
8.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
8.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
8.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
8.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
8.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
8.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
8.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
8.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
8.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
8.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
8.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
8.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
8.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
8.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
8.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
8.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
8.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
8.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
8.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
8.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
8.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
7.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
7.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
7.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
7.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
7.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
7.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
7.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
7.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
7.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
7.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
7.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
7.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
7.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
7.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
7.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
7.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
7.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
7.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
7.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
7.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
7.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
7.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
7.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
7.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
7.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
7.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
7.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
7.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
7.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
7.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
7.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
7.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
7.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
7.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
6.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
6.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
6.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
6.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
6.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
6.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
6.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
6.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
6.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
6.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
6.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
6.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
6.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
6.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
6.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
6.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
6.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
6.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
5.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
5.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
5.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
5.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
5.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
5.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
5.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
5.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
5.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
5.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
5.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
5.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
5.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
5.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
5.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
5.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
5.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
5.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
5.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
5.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
4.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
4.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
4.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
4.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
4.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
4.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
4.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
4.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
3.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
2.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CDC42SE2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
15.0
Number of samples
231
Samples
Sample
Description
TPM
DO45287
0 years, male, NA, stage:1, alive, 390 days
49.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
44.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
43.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
42.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
40.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
39.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
34.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
32.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
31.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
31.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
28.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
27.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
27.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
27.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
27.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
26.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
26.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
25.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
24.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
24.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
24.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
24.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
23.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
23.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
23.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
23.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
22.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
22.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
22.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
21.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
21.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
21.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
21.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
21.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
21.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
21.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
21.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
21.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
21.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
21.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
20.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
20.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
20.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
20.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
20.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
20.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
20.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
20.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
19.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
19.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
19.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
19.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
19.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
19.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
19.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
18.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
18.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
18.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
18.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
18.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
18.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
18.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
18.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
17.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
17.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
17.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
17.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
17.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
17.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
17.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
17.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
16.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
16.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
16.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
16.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
16.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
16.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
16.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
16.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
16.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
16.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
16.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
16.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
16.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
16.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
15.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
15.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
15.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
15.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
15.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
15.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
15.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
15.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
15.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
14.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
14.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
14.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
14.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
14.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
14.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
14.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
14.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
14.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
14.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
14.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
14.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
14.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
14.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
14.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
14.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
14.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
14.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
13.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
13.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
13.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
13.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
13.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
13.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
13.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
13.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
13.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
13.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
13.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
13.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
13.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
13.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
13.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
13.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
12.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
12.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
12.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
12.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
12.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
12.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
12.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
12.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
12.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
12.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
12.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
12.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
12.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
11.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
11.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
11.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
11.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
11.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
11.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
11.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
11.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
11.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
11.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
11.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
11.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
11.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
11.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
11.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
11.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
11.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
11.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
11.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
11.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
10.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
10.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
10.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
10.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
10.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
10.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
10.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
10.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
10.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
10.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
10.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
10.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
9.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
9.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
9.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
9.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
9.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
9.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
9.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
9.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
9.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
9.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
9.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
8.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
8.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
8.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
8.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
8.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
8.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
8.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
8.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
8.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
8.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
8.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
8.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
8.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
8.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
7.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
7.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
7.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
7.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
7.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
7.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
7.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
7.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
7.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
7.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
7.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
7.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
7.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
7.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
6.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
6.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
6.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
6.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
6.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
6.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
6.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
5.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
5.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
5.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
5.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
5.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
5.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
4.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
3.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
3.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
2.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
861
Tumor
1.6
865
Tumor
1.3
471
Tumor
1.2
951
Tumor
1.2
135
Tumor
1.1
714
Normal
1.1
642
Normal
1.1
131
Tumor
1.0
823
Tumor
1.0
696
Normal
0.9
617
Tumor
0.9
952
Normal
0.9
722
Normal
0.9
432
Normal
0.9
478
Normal
0.9
1046
Normal
0.8
862
Normal
0.8
716
Normal
0.8
967
Tumor
0.8
328
Normal
0.8
666
Normal
0.8
817
Tumor
0.8
141
Tumor
0.8
867
Tumor
0.8
474
Normal
0.8
446
Normal
0.7
877
Tumor
0.7
975
Tumor
0.7
864
Normal
0.7
364
Normal
0.7
444
Normal
0.7
863
Tumor
0.7
472
Normal
0.7
356
Normal
0.7
1045
Tumor
0.6
958
Normal
0.6
416
Normal
0.6
664
Normal
0.6
628
Normal
0.6
641
Tumor
0.6
461
Tumor
0.6
852
Normal
0.6
665
Tumor
0.6
968
Normal
0.6
185
Tumor
0.6
434
Normal
0.5
648
Normal
0.5
965
Tumor
0.5
662
Normal
0.5
627
Tumor
0.5
868
Normal
0.5
436
Normal
0.5
536
Normal
0.5
616
Normal
0.4
354
Normal
0.4
914
Normal
0.4
966
Normal
0.4
943
Tumor
0.4
473
Tumor
0.4
874
Normal
0.4
445
Tumor
0.4
344
Normal
0.4
686
Normal
0.4
857
Tumor
0.4
443
Tumor
0.4
866
Normal
0.4
963
Tumor
0.4
824
Normal
0.4
955
Tumor
0.4
146
Normal
0.4
481
Tumor
0.4
482
Normal
0.4
954
Normal
0.4
956
Normal
0.3
944
Normal
0.3
534
Normal
0.3
353
Tumor
0.3
1041
Tumor
0.3
911
Tumor
0.3
455
Tumor
0.3
188
Normal
0.3
815
Tumor
0.3
138
Normal
0.3
137
Tumor
0.3
672
Normal
0.3
341
Tumor
0.3
698
Normal
0.3
161
Tumor
0.3
918
Normal
0.3
211
Tumor
0.3
352
Normal
0.3
232
Normal
0.3
467
Tumor
0.3
278
Normal
0.3
433
Tumor
0.3
431
Tumor
0.3
342
Normal
0.3
314
Normal
0.3
636
Normal
0.3
697
Tumor
0.3
721
Tumor
0.3
818
Normal
0.3
196
Normal
0.3
851
Tumor
0.2
938
Normal
0.2
535
Tumor
0.2
937
Tumor
0.2
132
Normal
0.2
695
Tumor
0.2
456
Normal
0.2
618
Normal
0.2
363
Tumor
0.2
685
Tumor
0.2
635
Tumor
0.2
926
Normal
0.2
421
Tumor
0.2
452
Normal
0.2
228
Normal
0.2
924
Normal
0.2
224
Normal
0.2
187
Tumor
0.2
223
Tumor
0.2
671
Tumor
0.2
435
Tumor
0.2
983
Tumor
0.2
976
Normal
0.2
413
Tumor
0.2
142
Normal
0.2
448
Normal
0.2
415
Tumor
0.2
136
Normal
0.1
468
Normal
0.1
327
Tumor
0.1
1026
Normal
0.1
425
Tumor
0.1
1043
Tumor
0.1
298
Normal
0.1
412
Normal
0.1
1044
Normal
0.1
858
Normal
0.1
484
Normal
0.1
1042
Normal
0.1
451
Tumor
0.1
916
Normal
0.1
921
Tumor
0.1
615
Tumor
0.1
258
Normal
0.1
915
Tumor
0.1
427
Tumor
0.1
922
Normal
0.1
351
Tumor
0.1
312
Normal
0.1
186
Normal
0.1
953
Tumor
0.1
492
Normal
0.1
917
Tumor
0.1
715
Tumor
0.1
878
Normal
0.1
332
Normal
0.1
262
Normal
0.1
1022
Normal
0.1
426
Normal
0.1
358
Normal
0.1
498
Normal
0.1
497
Tumor
0.0
964
Normal
0.0
171
Tumor
0.0
1028
Normal
0.0
462
Normal
0.0
816
Normal
0.0
488
Normal
0.0
881
Tumor
0.0
464
Normal
0.0
527
Tumor
0.0
713
Tumor
0.0
554
Normal
0.0
661
Tumor
0.0
873
Tumor
0.0
447
Tumor
0.0
162
Normal
0.0
913
Tumor
0.0
487
Tumor
0.0
357
Tumor
0.0
268
Normal
0.0
978
Normal
0.0
545
Tumor
0.0
984
Normal
-0.1
1031
Tumor
-0.1
311
Tumor
-0.1
145
Tumor
-0.1
553
Tumor
-0.1
463
Tumor
-0.1
491
Tumor
-0.1
271
Tumor
-0.1
172
Normal
-0.1
912
Normal
-0.1
147
Tumor
-0.1
493
Tumor
-0.1
883
Tumor
-0.1
663
Tumor
-0.1
925
Tumor
-0.1
538
Normal
-0.1
477
Tumor
-0.1
977
Tumor
-0.1
343
Tumor
-0.1
297
Tumor
-0.1
882
Normal
-0.2
214
Normal
-0.2
1014
Normal
-0.2
422
Normal
-0.2
286
Normal
-0.2
284
Normal
-0.2
466
Normal
-0.2
267
Tumor
-0.2
1032
Normal
-0.2
227
Tumor
-0.2
1016
Normal
-0.2
148
Normal
-0.2
982
Normal
-0.2
331
Tumor
-0.2
494
Normal
-0.2
1021
Tumor
-0.2
423
Tumor
-0.2
957
Tumor
-0.2
923
Tumor
-0.2
424
Normal
-0.2
483
Tumor
-0.2
884
Normal
-0.2
546
Normal
-0.2
647
Tumor
-0.2
272
Normal
-0.3
981
Tumor
-0.3
283
Tumor
-0.3
1015
Tumor
-0.3
528
Normal
-0.3
428
Normal
-0.3
261
Tumor
-0.3
218
Normal
-0.3
414
Normal
-0.3
221
Tumor
-0.3
192
Normal
-0.3
1025
Tumor
-0.3
222
Normal
-0.3
195
Tumor
-0.4
1027
Tumor
-0.4
257
Tumor
-0.4
217
Tumor
-0.4
285
Tumor
-0.4
355
Tumor
-0.4
277
Tumor
-0.4
212
Normal
-0.5
1013
Tumor
-0.5
231
Tumor
-0.5
313
Tumor
-0.5
533
Tumor
-0.5
411
Tumor
-0.6
537
Tumor
-0.6
465
Tumor
-0.6
213
Tumor
-0.7
191
Tumor
-0.8
111
Normal
N/A
112
Tumor
N/A
113
Tumor
N/A
114
Normal
N/A
361
Tumor
N/A
362
Normal
N/A
123
Tumor
N/A
365
Tumor
N/A
124
Normal
N/A
366
Normal
N/A
125
Tumor
N/A
367
Tumor
N/A
126
Normal
N/A
368
Normal
N/A
127
Tumor
N/A
128
Normal
N/A
375
Tumor
N/A
376
Normal
N/A
813
Tumor
N/A
814
Normal
N/A
383
Tumor
N/A
384
Normal
N/A
385
Tumor
N/A
386
Normal
N/A
387
Tumor
N/A
388
Normal
N/A
391
Tumor
N/A
392
Normal
N/A
393
Tumor
N/A
394
Normal
N/A
395
Tumor
N/A
396
Normal
N/A
723
Tumor
N/A
724
Normal
N/A
727
Tumor
N/A
728
Normal
N/A
737
Tumor
N/A
738
Normal
N/A
741
Tumor
N/A
742
Normal
N/A
743
Tumor
N/A
744
Normal
N/A
745
Tumor
N/A
746
Normal
N/A
513
Tumor
N/A
755
Tumor
N/A
514
Normal
N/A
756
Normal
N/A
515
Tumor
N/A
516
Normal
N/A
517
Tumor
N/A
518
Normal
N/A
523
Tumor
N/A
524
Normal
N/A
525
Tumor
N/A
526
Normal
N/A
777
Tumor
N/A
778
Normal
N/A
785
Tumor
N/A
786
Normal
N/A
557
Tumor
N/A
558
Normal
N/A
563
Tumor
N/A
564
Normal
N/A
567
Tumor
N/A
568
Normal
N/A
571
Tumor
N/A
572
Normal
N/A
573
Tumor
N/A
574
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
