We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FCER1G is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
46.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
760.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
752.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
642.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
540.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
369.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
351.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
253.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
251.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
228.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
221.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
210.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
170.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
152.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
150.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
143.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
141.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
137.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
136.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
130.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
129.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
124.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
120.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
119.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
111.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
110.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
107.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
106.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
103.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
103.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
97.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
96.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
94.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
92.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
80.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
79.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
79.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
78.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
76.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
76.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
76.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
74.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
73.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
71.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
70.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
69.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
68.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
68.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
68.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
67.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
66.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
65.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
65.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
64.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
64.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
63.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
63.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
62.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
62.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
61.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
59.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
58.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
58.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
58.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
57.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
57.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
56.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
56.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
55.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
54.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
54.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
52.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
52.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
52.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
51.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
51.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
50.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
50.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
50.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
49.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
49.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
49.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
49.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
48.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
48.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
46.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
46.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
46.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
46.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
46.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
45.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
45.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
45.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
45.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
45.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
44.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
44.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
43.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
43.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
43.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
43.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
42.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
42.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
42.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
42.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
42.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
41.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
41.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
41.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
41.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
41.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
41.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
41.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
41.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
40.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
40.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
40.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
40.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
39.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
39.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
38.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
38.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
38.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
38.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
38.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
37.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
36.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
36.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
36.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
35.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
35.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
35.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
35.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
35.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
34.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
34.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
34.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
34.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
33.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
33.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
33.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
33.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
32.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
32.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
32.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
32.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
31.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
31.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
31.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
31.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
30.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
30.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
30.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
30.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
30.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
29.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
29.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
29.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
29.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
29.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
29.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
29.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
29.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
29.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
29.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
29.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
29.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
28.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
28.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
28.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
28.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
28.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
28.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
28.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
28.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
28.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
28.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
28.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
27.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
27.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
27.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
27.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
27.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
27.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
26.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
26.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
26.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
26.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
26.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
26.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
26.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
25.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
25.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
25.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
25.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
25.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
25.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
25.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
25.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
25.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
24.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
24.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
24.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
24.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
24.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
24.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
24.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
23.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
23.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
23.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
23.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
23.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
23.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
23.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
22.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
22.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
22.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
22.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
22.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
21.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
21.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
21.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
21.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
21.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
21.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
20.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
20.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
20.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
20.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
20.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
19.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
19.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
19.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
19.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
19.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
19.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
19.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
18.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
18.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
18.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
18.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
18.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
18.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
17.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
17.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
17.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
17.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
17.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
17.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
17.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
17.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
17.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
17.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
16.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
16.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
16.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
16.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
16.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
16.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
16.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
16.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
16.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
16.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
15.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
15.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
15.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
15.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
15.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
15.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
15.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
15.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
14.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
14.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
14.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
14.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
14.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
14.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
13.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
13.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
13.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
13.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
13.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
13.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
13.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
13.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
13.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
13.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
12.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
12.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
12.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
12.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
12.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
12.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
12.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
12.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
12.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
12.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
11.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
11.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
11.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
11.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
11.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
11.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
11.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
11.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
11.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
11.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
11.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
11.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
11.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
11.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
11.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
11.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
11.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
11.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
11.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
10.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
10.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
10.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
10.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
10.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
10.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
10.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
10.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
10.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
9.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
9.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
9.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
9.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
9.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
9.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
9.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
9.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
9.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
9.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
9.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
9.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
8.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
8.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
8.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
8.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
8.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
8.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
7.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
7.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
7.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
7.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
7.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
6.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
6.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
6.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
6.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
6.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
5.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
5.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
5.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
4.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
4.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
4.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FCER1G is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
79.7
Number of samples
231
Samples
Sample
Description
TPM
DO45145
0 years, male, NA, stage:3, dead, 60 days
960.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
738.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
670.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
505.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
455.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
437.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
379.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
342.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
332.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
298.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
282.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
267.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
258.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
254.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
250.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
243.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
240.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
226.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
223.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
201.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
197.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
189.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
186.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
168.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
158.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
151.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
150.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
150.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
140.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
137.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
133.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
131.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
128.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
124.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
122.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
113.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
112.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
112.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
111.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
109.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
107.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
105.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
105.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
105.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
104.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
101.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
99.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
98.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
98.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
97.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
92.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
90.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
89.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
88.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
88.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
87.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
85.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
83.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
82.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
80.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
80.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
78.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
78.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
78.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
77.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
76.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
76.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
75.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
75.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
73.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
71.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
71.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
70.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
70.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
69.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
69.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
69.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
68.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
68.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
67.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
67.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
65.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
65.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
65.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
63.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
62.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
62.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
61.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
59.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
59.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
58.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
58.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
58.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
57.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
57.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
56.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
56.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
55.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
55.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
55.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
55.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
55.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
54.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
54.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
54.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
53.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
52.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
51.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
51.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
49.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
49.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
49.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
48.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
48.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
48.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
47.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
46.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
46.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
45.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
44.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
44.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
43.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
42.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
42.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
42.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
41.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
41.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
41.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
41.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
41.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
40.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
39.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
39.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
39.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
38.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
38.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
38.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
36.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
36.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
34.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
33.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
32.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
32.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
31.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
31.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
31.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
30.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
30.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
30.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
29.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
29.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
29.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
28.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
28.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
28.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
28.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
27.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
27.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
27.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
26.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
26.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
26.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
26.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
25.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
25.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
24.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
23.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
23.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
23.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
22.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
22.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
22.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
22.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
21.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
21.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
21.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
21.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
21.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
21.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
20.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
20.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
19.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
18.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
18.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
17.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
17.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
17.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
16.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
16.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
16.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
16.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
16.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
16.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
15.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
15.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
15.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
13.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
13.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
12.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
12.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
12.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
12.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
11.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
11.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
11.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
11.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
11.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
10.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
10.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
10.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
10.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
10.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
10.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
9.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
8.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
8.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
8.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
7.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
7.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
7.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
7.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
7.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
7.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
6.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
5.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
5.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
5.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
4.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
4.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
4.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
2.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
661
Tumor
2.0
492
Normal
1.6
978
Normal
1.5
283
Tumor
1.5
434
Normal
1.5
686
Normal
1.3
966
Normal
1.3
262
Normal
1.3
524
Normal
1.3
724
Normal
1.2
1028
Normal
1.2
536
Normal
1.2
498
Normal
1.1
914
Normal
1.1
954
Normal
1.0
491
Tumor
1.0
211
Tumor
1.0
778
Normal
1.0
983
Tumor
0.9
952
Normal
0.9
984
Normal
0.9
217
Tumor
0.9
861
Tumor
0.9
721
Tumor
0.9
528
Normal
0.9
368
Normal
0.9
926
Normal
0.8
1026
Normal
0.8
224
Normal
0.8
1014
Normal
0.8
696
Normal
0.8
311
Tumor
0.8
284
Normal
0.8
535
Tumor
0.8
124
Normal
0.7
1044
Normal
0.7
852
Normal
0.7
494
Normal
0.7
213
Tumor
0.7
286
Normal
0.7
943
Tumor
0.7
851
Tumor
0.7
916
Normal
0.7
1015
Tumor
0.7
467
Tumor
0.6
478
Normal
0.6
518
Normal
0.6
432
Normal
0.6
385
Tumor
0.6
142
Normal
0.6
716
Normal
0.6
814
Normal
0.6
526
Normal
0.6
514
Normal
0.6
488
Normal
0.6
367
Tumor
0.6
391
Tumor
0.6
125
Tumor
0.6
538
Normal
0.5
138
Normal
0.5
922
Normal
0.5
917
Tumor
0.5
456
Normal
0.5
212
Normal
0.5
672
Normal
0.5
867
Tumor
0.5
468
Normal
0.5
366
Normal
0.5
738
Normal
0.5
968
Normal
0.5
858
Normal
0.5
728
Normal
0.5
1022
Normal
0.5
1042
Normal
0.5
744
Normal
0.4
525
Tumor
0.4
352
Normal
0.4
218
Normal
0.4
573
Tumor
0.4
1031
Tumor
0.4
332
Normal
0.4
698
Normal
0.4
664
Normal
0.4
415
Tumor
0.4
714
Normal
0.4
558
Normal
0.4
866
Normal
0.4
376
Normal
0.4
554
Normal
0.4
343
Tumor
0.3
1046
Normal
0.3
516
Normal
0.3
912
Normal
0.3
628
Normal
0.3
392
Normal
0.3
136
Normal
0.3
111
Normal
0.3
1016
Normal
0.3
666
Normal
0.3
195
Tumor
0.3
722
Normal
0.3
126
Normal
0.3
662
Normal
0.3
882
Normal
0.3
918
Normal
0.3
964
Normal
0.3
824
Normal
0.3
756
Normal
0.3
146
Normal
0.3
862
Normal
0.3
261
Tumor
0.2
396
Normal
0.2
816
Normal
0.2
915
Tumor
0.2
976
Normal
0.2
354
Normal
0.2
815
Tumor
0.2
938
Normal
0.2
214
Normal
0.2
823
Tumor
0.2
232
Normal
0.2
864
Normal
0.2
925
Tumor
0.2
414
Normal
0.2
424
Normal
0.2
868
Normal
0.2
484
Normal
0.2
818
Normal
0.2
857
Tumor
0.2
114
Normal
0.2
384
Normal
0.2
272
Normal
0.2
258
Normal
0.2
546
Normal
0.2
534
Normal
0.1
955
Tumor
0.1
362
Normal
0.1
953
Tumor
0.1
557
Tumor
0.1
884
Normal
0.1
474
Normal
0.1
268
Normal
0.1
383
Tumor
0.1
1032
Normal
0.1
878
Normal
0.1
451
Tumor
0.1
874
Normal
0.1
356
Normal
0.1
913
Tumor
0.1
188
Normal
0.1
958
Normal
0.1
375
Tumor
0.1
185
Tumor
0.1
412
Normal
0.1
723
Tumor
0.1
447
Tumor
0.1
344
Normal
0.0
394
Normal
0.0
444
Normal
0.0
944
Normal
0.0
298
Normal
0.0
742
Normal
0.0
924
Normal
0.0
452
Normal
0.0
416
Normal
0.0
493
Tumor
0.0
537
Tumor
0.0
574
Normal
0.0
448
Normal
0.0
713
Tumor
0.0
481
Tumor
0.0
462
Normal
0.0
786
Normal
0.0
358
Normal
0.0
482
Normal
0.0
642
Normal
0.0
956
Normal
0.0
192
Normal
0.0
421
Tumor
0.0
963
Tumor
0.0
472
Normal
-0.1
228
Normal
-0.1
568
Normal
-0.1
564
Normal
-0.1
364
Normal
-0.1
386
Normal
-0.1
883
Tumor
-0.1
1045
Tumor
-0.1
697
Tumor
-0.1
355
Tumor
-0.1
196
Normal
-0.1
446
Normal
-0.1
1043
Tumor
-0.1
461
Tumor
-0.1
145
Tumor
-0.1
162
Normal
-0.1
553
Tumor
-0.1
616
Normal
-0.1
464
Normal
-0.1
982
Normal
-0.1
877
Tumor
-0.1
881
Tumor
-0.2
618
Normal
-0.2
817
Tumor
-0.2
328
Normal
-0.2
951
Tumor
-0.2
422
Normal
-0.2
965
Tumor
-0.2
572
Normal
-0.2
563
Tumor
-0.2
436
Normal
-0.2
428
Normal
-0.2
746
Normal
-0.2
466
Normal
-0.2
312
Normal
-0.3
365
Tumor
-0.3
172
Normal
-0.3
813
Tumor
-0.3
648
Normal
-0.3
342
Normal
-0.3
351
Tumor
-0.3
413
Tumor
-0.3
455
Tumor
-0.3
141
Tumor
-0.3
715
Tumor
-0.3
426
Normal
-0.3
685
Tumor
-0.3
222
Normal
-0.3
671
Tumor
-0.4
231
Tumor
-0.4
223
Tumor
-0.4
148
Normal
-0.4
483
Tumor
-0.4
363
Tumor
-0.4
132
Normal
-0.4
636
Normal
-0.4
191
Tumor
-0.4
873
Tumor
-0.4
285
Tumor
-0.4
278
Normal
-0.4
388
Normal
-0.4
665
Tumor
-0.4
161
Tumor
-0.4
186
Normal
-0.4
433
Tumor
-0.5
865
Tumor
-0.5
515
Tumor
-0.5
113
Tumor
-0.5
617
Tumor
-0.5
427
Tumor
-0.5
137
Tumor
-0.5
545
Tumor
-0.6
297
Tumor
-0.6
975
Tumor
-0.6
533
Tumor
-0.6
923
Tumor
-0.6
1027
Tumor
-0.6
187
Tumor
-0.6
463
Tumor
-0.6
135
Tumor
-0.6
863
Tumor
-0.6
314
Normal
-0.6
937
Tumor
-0.6
785
Tumor
-0.6
353
Tumor
-0.6
967
Tumor
-0.6
423
Tumor
-0.6
477
Tumor
-0.6
395
Tumor
-0.6
977
Tumor
-0.7
663
Tumor
-0.7
271
Tumor
-0.7
627
Tumor
-0.7
527
Tumor
-0.7
128
Normal
-0.7
497
Tumor
-0.7
727
Tumor
-0.7
487
Tumor
-0.8
523
Tumor
-0.8
921
Tumor
-0.8
471
Tumor
-0.8
615
Tumor
-0.8
411
Tumor
-0.8
513
Tumor
-0.8
957
Tumor
-0.8
755
Tumor
-0.8
517
Tumor
-0.8
227
Tumor
-0.9
1025
Tumor
-0.9
387
Tumor
-0.9
1021
Tumor
-0.9
267
Tumor
-0.9
327
Tumor
-0.9
1041
Tumor
-0.9
641
Tumor
-1.0
981
Tumor
-1.0
737
Tumor
-1.0
331
Tumor
-1.0
257
Tumor
-1.0
473
Tumor
-1.1
221
Tumor
-1.1
567
Tumor
-1.1
443
Tumor
-1.2
741
Tumor
-1.2
277
Tumor
-1.2
127
Tumor
-1.2
465
Tumor
-1.2
361
Tumor
-1.2
425
Tumor
-1.2
571
Tumor
-1.3
1013
Tumor
-1.3
313
Tumor
-1.4
147
Tumor
-1.4
123
Tumor
-1.5
431
Tumor
-1.5
911
Tumor
-1.6
777
Tumor
-1.6
341
Tumor
-1.6
743
Tumor
-1.7
131
Tumor
-1.7
647
Tumor
-1.8
393
Tumor
-1.8
171
Tumor
-1.8
445
Tumor
-1.9
695
Tumor
-2.0
112
Tumor
-2.0
635
Tumor
-2.0
357
Tumor
-2.0
745
Tumor
-2.2
435
Tumor
-2.6
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.