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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NPM2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
3.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
53.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
52.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
37.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
34.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
24.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
21.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
20.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
20.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
19.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
18.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
18.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
17.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
16.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
16.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
16.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
16.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
16.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
15.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
15.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
14.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
13.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
13.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
13.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
13.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
13.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
13.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
13.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
12.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
12.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
12.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
12.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
12.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
12.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
11.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
11.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
11.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
11.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
11.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
10.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
10.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
10.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
10.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
9.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
9.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
9.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
9.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
9.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
9.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
8.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
8.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
8.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
8.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
8.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
8.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
8.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
8.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
8.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
8.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
8.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
8.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
8.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
7.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
7.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
7.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
7.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
7.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
7.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
7.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
7.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
6.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
6.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
6.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
6.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
6.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
6.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
6.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
6.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
6.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
6.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
6.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
6.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
6.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
5.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
5.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
5.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
5.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
5.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
5.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
5.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
5.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
5.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
5.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
5.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
4.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
4.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
4.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
4.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
4.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
4.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
4.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
4.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
4.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
4.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
4.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
3.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
3.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
3.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
3.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
3.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
3.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
3.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
3.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
3.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
3.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
3.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
3.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
3.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
3.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
3.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
3.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
3.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
2.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
2.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
2.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
2.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
2.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
2.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
2.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
2.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
2.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
2.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
2.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
2.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
2.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
2.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
2.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
2.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
2.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
2.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
2.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
1.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
1.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
1.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
1.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
1.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
1.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
1.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
1.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
1.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
1.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
1.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
1.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
1.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
1.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
1.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
1.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
1.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
1.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
1.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
1.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
1.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
1.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
1.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
1.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
1.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
1.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
1.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
1.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
1.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
1.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
1.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
1.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
1.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
1.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
1.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
1.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
1.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
1.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
1.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
1.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
1.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
1.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
1.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
1.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
1.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
1.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
0.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
0.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
0.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
0.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
0.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
0.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
0.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
0.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
0.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
0.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
0.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
0.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
0.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
0.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
0.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
0.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
0.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
0.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
0.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
0.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
0.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
0.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
0.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
0.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
0.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
0.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
0.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
0.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
0.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
0.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
0.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
0.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
0.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
0.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
0.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
0.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
0.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
0.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
0.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
0.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
0.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
0.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
0.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
0.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
0.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
0.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
0.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
0.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
0.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
0.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
0.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
0.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
0.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
0.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
0.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
0.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
0.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
0.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
0.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
0.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
0.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
0.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
0.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
0.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
0.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
0.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
0.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NPM2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
3.4
Number of samples
231
Samples
Sample
Description
TPM
DO50839
0 years, female, NA, stage:3, alive, 330 days
49.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
46.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
32.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
31.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
26.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
24.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
24.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
22.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
20.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
18.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
17.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
16.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
14.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
14.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
13.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
11.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
11.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
11.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
11.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
10.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
10.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
9.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
9.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
8.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
8.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
8.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
7.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
7.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
7.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
7.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
6.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
6.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
5.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
5.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
5.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
5.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
5.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
5.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
5.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
5.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
5.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
4.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
4.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
4.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
4.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
4.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
4.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
4.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
4.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
3.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
3.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
3.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
3.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
3.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
3.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
3.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
3.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
3.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
3.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
3.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
3.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
3.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
2.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
2.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
2.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
2.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
2.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
2.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
2.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
2.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
2.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
2.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
2.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
2.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
2.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
2.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
2.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
2.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
2.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
2.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
2.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
2.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
1.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
1.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
1.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
1.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
1.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
1.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
1.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
1.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
1.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
1.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
1.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
1.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
1.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
1.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
1.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
1.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
1.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
1.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
1.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
1.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
1.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
1.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
1.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
1.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
1.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
1.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
1.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
1.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
1.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
1.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
0.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
0.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
0.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
0.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
0.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
0.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
0.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
0.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
0.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
0.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
0.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
0.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
0.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
0.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
0.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
0.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
0.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
0.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
0.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
0.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
0.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
0.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
0.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
0.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
0.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
0.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
0.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
0.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
0.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
0.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
0.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
0.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
0.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
0.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
0.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
0.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
0.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
0.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
0.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
0.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
0.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
0.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
0.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
0.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
0.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
0.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
0.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
0.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
0.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
0.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
0.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
0.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
0.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
0.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
0.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
0.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
0.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
0.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
0.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
0.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
0.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
0.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
0.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
0.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
0.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
0.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
0.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
0.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
0.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
0.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
0.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
0.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
0.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
0.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
0.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
0.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
0.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
0.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
0.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
0.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
0.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
0.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
0.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
0.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
0.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
0.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
0.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
0.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
0.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
0.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
0.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
0.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
0.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
0.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
0.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
0.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
0.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
0.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
0.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
0.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1027
Tumor
3.8
513
Tumor
3.1
147
Tumor
2.8
635
Tumor
2.5
445
Tumor
2.3
465
Tumor
2.3
112
Tumor
2.3
483
Tumor
2.2
977
Tumor
2.2
135
Tumor
1.8
433
Tumor
1.7
425
Tumor
1.7
911
Tumor
1.6
925
Tumor
1.6
375
Tumor
1.5
493
Tumor
1.5
313
Tumor
1.4
443
Tumor
1.4
431
Tumor
1.3
1045
Tumor
1.2
423
Tumor
1.2
426
Normal
1.0
127
Tumor
1.0
231
Tumor
0.9
271
Tumor
0.9
873
Tumor
0.9
267
Tumor
0.8
737
Tumor
0.8
741
Tumor
0.8
861
Tumor
0.7
125
Tumor
0.6
268
Normal
0.6
421
Tumor
0.6
272
Normal
0.5
258
Normal
0.5
232
Normal
0.5
361
Tumor
0.5
262
Normal
0.5
627
Tumor
0.5
384
Normal
0.5
311
Tumor
0.5
414
Normal
0.4
257
Tumor
0.4
185
Tumor
0.4
365
Tumor
0.4
742
Normal
0.4
132
Normal
0.3
367
Tumor
0.3
428
Normal
0.3
261
Tumor
0.3
383
Tumor
0.3
427
Tumor
0.3
715
Tumor
0.2
161
Tumor
0.2
376
Normal
0.2
636
Normal
0.2
366
Normal
0.2
422
Normal
0.2
492
Normal
0.2
641
Tumor
0.2
1025
Tumor
0.2
728
Normal
0.2
1026
Normal
0.1
368
Normal
0.1
642
Normal
0.1
1015
Tumor
0.1
455
Tumor
0.0
494
Normal
0.0
444
Normal
0.0
863
Tumor
0.0
1032
Normal
0.0
618
Normal
0.0
868
Normal
0.0
124
Normal
0.0
698
Normal
0.0
424
Normal
0.0
451
Tumor
0.0
1022
Normal
0.0
126
Normal
0.0
452
Normal
-0.1
1042
Normal
-0.1
917
Tumor
-0.1
464
Normal
-0.1
616
Normal
-0.1
312
Normal
-0.1
874
Normal
-0.1
1041
Tumor
-0.1
628
Normal
-0.1
277
Tumor
-0.1
362
Normal
-0.1
145
Tumor
-0.1
723
Tumor
-0.1
1021
Tumor
-0.2
434
Normal
-0.2
114
Normal
-0.2
738
Normal
-0.2
172
Normal
-0.2
862
Normal
-0.2
615
Tumor
-0.2
727
Tumor
-0.2
446
Normal
-0.2
138
Normal
-0.2
491
Tumor
-0.2
498
Normal
-0.2
136
Normal
-0.3
866
Normal
-0.3
884
Normal
-0.3
488
Normal
-0.3
146
Normal
-0.3
128
Normal
-0.3
524
Normal
-0.3
984
Normal
-0.3
456
Normal
-0.3
864
Normal
-0.4
463
Tumor
-0.4
916
Normal
-0.4
1044
Normal
-0.4
468
Normal
-0.4
432
Normal
-0.4
914
Normal
-0.4
186
Normal
-0.4
466
Normal
-0.4
516
Normal
-0.4
517
Tumor
-0.4
484
Normal
-0.4
111
Normal
-0.4
297
Tumor
-0.4
1014
Normal
-0.5
162
Normal
-0.5
331
Tumor
-0.5
148
Normal
-0.5
722
Normal
-0.5
137
Tumor
-0.5
514
Normal
-0.5
188
Normal
-0.5
436
Normal
-0.5
617
Tumor
-0.5
978
Normal
-0.5
413
Tumor
-0.6
881
Tumor
-0.6
525
Tumor
-0.6
187
Tumor
-0.6
518
Normal
-0.6
448
Normal
-0.6
877
Tumor
-0.6
716
Normal
-0.6
1016
Normal
-0.6
113
Tumor
-0.6
536
Normal
-0.6
714
Normal
-0.6
526
Normal
-0.6
865
Tumor
-0.6
1043
Tumor
-0.6
497
Tumor
-0.6
744
Normal
-0.6
912
Normal
-0.7
435
Tumor
-0.7
926
Normal
-0.7
982
Normal
-0.7
123
Tumor
-0.7
924
Normal
-0.7
1013
Tumor
-0.7
314
Normal
-0.7
922
Normal
-0.7
743
Tumor
-0.7
298
Normal
-0.7
721
Tumor
-0.7
523
Tumor
-0.8
918
Normal
-0.8
1031
Tumor
-0.8
882
Normal
-0.9
867
Tumor
-0.9
983
Tumor
-0.9
883
Tumor
-0.9
696
Normal
-0.9
142
Normal
-1.0
467
Tumor
-1.0
171
Tumor
-1.0
686
Normal
-1.0
447
Tumor
-1.0
878
Normal
-1.0
278
Normal
-1.0
981
Tumor
-1.0
1046
Normal
-1.1
913
Tumor
-1.1
487
Tumor
-1.1
141
Tumor
-1.1
332
Normal
-1.1
923
Tumor
-1.2
695
Tumor
-1.3
921
Tumor
-1.3
915
Tumor
-1.5
713
Tumor
-1.5
515
Tumor
-1.6
685
Tumor
-1.7
697
Tumor
-1.8
724
Normal
-1.8
131
Tumor
-2.0
535
Tumor
-2.4
471
Tumor
N/A
351
Tumor
N/A
472
Normal
N/A
352
Normal
N/A
473
Tumor
N/A
353
Tumor
N/A
474
Normal
N/A
354
Normal
N/A
355
Tumor
N/A
356
Normal
N/A
477
Tumor
N/A
357
Tumor
N/A
478
Normal
N/A
358
Normal
N/A
481
Tumor
N/A
482
Normal
N/A
363
Tumor
N/A
364
Normal
N/A
813
Tumor
N/A
814
Normal
N/A
815
Tumor
N/A
816
Normal
N/A
937
Tumor
N/A
817
Tumor
N/A
938
Normal
N/A
818
Normal
N/A
385
Tumor
N/A
386
Normal
N/A
387
Tumor
N/A
388
Normal
N/A
943
Tumor
N/A
823
Tumor
N/A
944
Normal
N/A
824
Normal
N/A
391
Tumor
N/A
392
Normal
N/A
393
Tumor
N/A
394
Normal
N/A
395
Tumor
N/A
396
Normal
N/A
951
Tumor
N/A
952
Normal
N/A
953
Tumor
N/A
954
Normal
N/A
955
Tumor
N/A
956
Normal
N/A
957
Tumor
N/A
958
Normal
N/A
283
Tumor
N/A
284
Normal
N/A
285
Tumor
N/A
286
Normal
N/A
1028
Normal
N/A
963
Tumor
N/A
964
Normal
N/A
965
Tumor
N/A
966
Normal
N/A
967
Tumor
N/A
968
Normal
N/A
851
Tumor
N/A
852
Normal
N/A
975
Tumor
N/A
976
Normal
N/A
857
Tumor
N/A
858
Normal
N/A
745
Tumor
N/A
746
Normal
N/A
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
755
Tumor
N/A
756
Normal
N/A
647
Tumor
N/A
527
Tumor
N/A
648
Normal
N/A
528
Normal
N/A
411
Tumor
N/A
412
Normal
N/A
533
Tumor
N/A
534
Normal
N/A
777
Tumor
N/A
415
Tumor
N/A
778
Normal
N/A
416
Normal
N/A
537
Tumor
N/A
538
Normal
N/A
661
Tumor
N/A
662
Normal
N/A
663
Tumor
N/A
664
Normal
N/A
785
Tumor
N/A
665
Tumor
N/A
786
Normal
N/A
545
Tumor
N/A
666
Normal
N/A
546
Normal
N/A
671
Tumor
N/A
672
Normal
N/A
553
Tumor
N/A
554
Normal
N/A
557
Tumor
N/A
558
Normal
N/A
563
Tumor
N/A
564
Normal
N/A
567
Tumor
N/A
568
Normal
N/A
327
Tumor
N/A
328
Normal
N/A
571
Tumor
N/A
572
Normal
N/A
573
Tumor
N/A
211
Tumor
N/A
574
Normal
N/A
212
Normal
N/A
213
Tumor
N/A
214
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
461
Tumor
N/A
341
Tumor
N/A
462
Normal
N/A
221
Tumor
N/A
342
Normal
N/A
222
Normal
N/A
343
Tumor
N/A
223
Tumor
N/A
344
Normal
N/A
224
Normal
N/A
227
Tumor
N/A
228
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
