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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DEDD is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
18.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
64.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
62.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
61.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
48.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
47.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
47.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
46.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
41.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
40.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
40.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
40.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
39.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
38.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
37.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
35.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
35.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
35.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
35.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
35.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
34.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
34.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
34.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
34.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
33.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
33.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
33.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
33.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
32.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
32.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
31.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
31.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
31.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
30.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
30.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
30.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
29.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
29.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
29.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
29.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
28.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
28.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
28.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
28.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
27.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
27.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
27.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
27.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
27.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
27.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
27.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
27.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
26.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
26.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
26.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
26.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
26.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
26.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
26.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
25.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
25.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
25.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
25.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
25.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
25.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
25.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
25.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
25.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
25.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
25.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
25.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
24.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
24.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
24.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
24.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
24.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
24.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
24.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
24.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
24.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
23.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
23.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
23.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
23.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
23.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
23.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
23.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
23.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
23.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
23.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
23.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
23.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
22.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
22.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
22.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
22.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
22.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
22.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
22.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
22.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
22.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
22.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
22.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
22.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
22.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
22.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
22.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
22.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
22.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
21.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
21.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
21.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
21.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
21.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
21.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
21.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
21.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
21.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
21.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
21.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
21.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
21.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
20.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
20.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
20.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
20.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
20.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
20.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
20.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
20.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
20.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
20.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
20.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
20.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
19.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
19.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
19.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
19.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
19.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
19.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
19.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
19.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
19.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
19.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
19.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
19.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
19.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
19.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
19.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
19.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
19.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
19.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
19.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
19.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
19.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
19.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
18.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
18.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
18.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
18.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
18.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
18.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
18.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
18.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
18.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
18.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
18.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
18.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
18.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
18.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
18.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
18.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
18.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
18.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
18.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
18.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
18.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
18.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
18.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
18.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
17.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
17.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
17.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
17.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
17.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
17.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
17.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
17.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
17.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
17.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
17.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
17.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
17.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
17.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
16.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
16.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
16.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
16.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
16.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
16.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
16.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
16.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
16.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
16.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
16.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
16.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
16.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
16.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
16.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
16.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
16.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
16.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
15.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
15.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
15.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
15.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
15.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
15.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
15.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
15.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
15.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
15.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
15.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
15.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
14.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
14.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
14.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
14.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
14.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
14.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
14.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
14.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
14.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
14.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
14.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
14.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
14.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
14.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
14.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
14.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
14.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
14.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
14.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
14.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
14.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
13.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
13.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
13.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
13.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
13.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
13.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
13.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
13.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
13.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
13.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
13.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
13.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
13.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
13.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
13.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
13.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
12.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
12.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
12.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
12.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
12.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
12.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
12.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
12.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
12.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
12.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
12.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
12.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
12.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
12.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
12.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
12.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
12.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
12.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
12.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
12.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
12.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
12.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
12.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
12.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
11.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
11.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
11.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
11.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
11.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
11.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
11.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
11.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
11.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
11.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
11.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
11.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
11.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
11.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
11.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
11.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
11.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
10.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
10.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
10.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
10.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
10.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
10.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
10.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
10.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
10.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
10.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
10.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
10.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
10.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
9.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
9.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
9.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
9.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
9.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
9.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
9.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
9.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
9.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
9.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
9.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
9.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
9.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
8.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
8.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
8.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
8.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
8.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
8.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
8.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
8.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
8.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
8.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
8.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
8.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
7.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
7.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
7.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
7.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
7.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
7.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
7.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
7.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
7.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
7.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
7.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
7.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
7.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
6.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
6.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
6.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
6.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
5.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
4.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DEDD is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
20.4
Number of samples
231
Samples
Sample
Description
TPM
DO48746
0 years, male, NA, stage:3, alive, 570 days
47.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
42.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
40.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
40.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
38.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
37.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
36.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
35.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
34.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
33.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
33.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
33.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
33.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
33.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
32.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
31.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
31.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
30.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
30.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
30.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
30.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
30.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
29.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
29.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
29.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
29.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
29.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
29.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
29.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
28.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
28.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
28.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
28.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
28.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
28.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
27.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
27.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
27.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
26.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
26.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
26.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
26.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
25.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
25.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
25.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
25.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
25.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
25.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
25.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
24.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
24.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
24.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
24.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
24.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
24.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
24.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
24.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
24.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
24.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
24.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
24.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
23.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
23.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
23.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
23.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
23.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
23.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
23.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
23.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
23.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
23.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
23.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
23.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
22.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
22.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
22.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
22.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
22.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
22.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
22.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
22.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
22.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
22.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
22.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
22.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
22.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
22.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
21.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
21.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
21.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
21.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
21.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
21.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
21.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
21.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
21.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
21.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
21.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
20.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
20.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
20.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
20.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
20.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
20.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
20.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
20.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
20.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
20.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
20.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
20.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
19.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
19.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
19.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
19.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
19.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
19.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
19.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
19.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
19.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
19.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
19.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
19.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
19.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
18.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
18.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
18.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
18.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
18.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
18.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
18.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
18.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
18.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
18.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
17.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
17.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
17.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
17.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
17.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
17.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
17.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
17.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
17.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
17.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
17.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
17.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
17.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
17.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
16.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
16.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
16.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
16.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
16.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
16.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
16.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
16.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
16.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
16.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
16.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
16.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
15.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
15.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
15.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
15.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
15.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
15.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
15.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
15.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
15.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
15.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
15.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
15.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
15.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
15.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
15.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
15.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
15.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
14.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
14.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
14.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
14.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
14.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
14.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
14.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
14.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
14.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
14.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
14.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
14.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
14.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
14.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
14.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
14.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
14.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
14.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
14.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
13.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
13.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
13.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
13.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
13.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
13.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
13.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
13.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
13.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
13.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
13.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
13.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
13.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
12.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
12.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
12.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
12.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
12.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
12.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
12.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
11.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
11.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
11.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
11.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
11.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
11.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
11.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
11.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
10.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
10.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
10.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
10.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
10.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
9.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
8.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
7.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
368
Normal
3.6
686
Normal
1.1
863
Tumor
1.0
366
Normal
0.9
525
Tumor
0.7
447
Tumor
0.7
716
Normal
0.7
147
Tumor
0.6
817
Tumor
0.6
131
Tumor
0.5
468
Normal
0.5
965
Tumor
0.5
921
Tumor
0.5
536
Normal
0.5
1014
Normal
0.5
376
Normal
0.5
456
Normal
0.5
452
Normal
0.4
714
Normal
0.4
362
Normal
0.4
513
Tumor
0.4
145
Tumor
0.4
953
Tumor
0.4
467
Tumor
0.4
463
Tumor
0.4
327
Tumor
0.4
984
Normal
0.4
427
Tumor
0.4
413
Tumor
0.3
978
Normal
0.3
925
Tumor
0.3
187
Tumor
0.3
943
Tumor
0.3
297
Tumor
0.3
976
Normal
0.3
161
Tumor
0.3
364
Normal
0.3
185
Tumor
0.3
416
Normal
0.3
464
Normal
0.3
328
Normal
0.3
355
Tumor
0.3
415
Tumor
0.2
421
Tumor
0.2
877
Tumor
0.2
957
Tumor
0.2
823
Tumor
0.2
384
Normal
0.2
968
Normal
0.2
356
Normal
0.2
141
Tumor
0.2
868
Normal
0.2
816
Normal
0.2
535
Tumor
0.2
277
Tumor
0.1
524
Normal
0.1
554
Normal
0.1
545
Tumor
0.1
951
Tumor
0.1
883
Tumor
0.1
873
Tumor
0.1
514
Normal
0.1
923
Tumor
0.1
864
Normal
0.1
982
Normal
0.1
964
Normal
0.1
914
Normal
0.1
146
Normal
0.1
958
Normal
0.1
451
Tumor
0.1
852
Normal
0.1
466
Normal
0.1
188
Normal
0.1
136
Normal
0.1
874
Normal
0.1
697
Tumor
0.1
526
Normal
0.1
867
Tumor
0.1
412
Normal
0.1
533
Tumor
0.1
963
Tumor
0.1
924
Normal
0.1
956
Normal
0.1
975
Tumor
0.0
312
Normal
0.0
861
Tumor
0.0
926
Normal
0.0
455
Tumor
0.0
137
Tumor
0.0
952
Normal
0.0
528
Normal
0.0
298
Normal
0.0
866
Normal
0.0
915
Tumor
0.0
363
Tumor
0.0
912
Normal
0.0
538
Normal
-0.1
966
Normal
-0.1
881
Tumor
-0.1
1015
Tumor
-0.1
424
Normal
-0.1
857
Tumor
-0.1
858
Normal
-0.1
516
Normal
-0.1
313
Tumor
-0.1
865
Tumor
-0.1
916
Normal
-0.1
422
Normal
-0.1
537
Tumor
-0.1
527
Tumor
-0.1
361
Tumor
-0.1
922
Normal
-0.1
884
Normal
-0.1
918
Normal
-0.1
423
Tumor
-0.1
135
Tumor
-0.1
523
Tumor
-0.1
426
Normal
-0.1
314
Normal
-0.1
955
Tumor
-0.1
981
Tumor
-0.1
882
Normal
-0.1
913
Tumor
-0.1
278
Normal
-0.1
917
Tumor
-0.1
138
Normal
-0.1
954
Normal
-0.2
411
Tumor
-0.2
517
Tumor
-0.2
311
Tumor
-0.2
465
Tumor
-0.2
1045
Tumor
-0.2
518
Normal
-0.2
983
Tumor
-0.2
967
Tumor
-0.2
546
Normal
-0.2
938
Normal
-0.2
878
Normal
-0.2
148
Normal
-0.2
534
Normal
-0.2
332
Normal
-0.2
365
Tumor
-0.2
142
Normal
-0.2
425
Tumor
-0.2
172
Normal
-0.2
428
Normal
-0.3
944
Normal
-0.3
1046
Normal
-0.3
186
Normal
-0.3
132
Normal
-0.3
1043
Tumor
-0.3
162
Normal
-0.3
414
Normal
-0.3
818
Normal
-0.3
824
Normal
-0.3
375
Tumor
-0.3
815
Tumor
-0.3
171
Tumor
-0.3
553
Tumor
-0.4
1044
Normal
-0.4
1016
Normal
-0.4
695
Tumor
-0.4
1013
Tumor
-0.4
515
Tumor
-0.4
851
Tumor
-0.4
911
Tumor
-0.5
862
Normal
-0.5
448
Normal
-0.5
977
Tumor
-0.5
331
Tumor
-0.6
383
Tumor
-0.6
713
Tumor
-0.6
721
Tumor
-0.6
722
Normal
-0.6
715
Tumor
-0.6
696
Normal
-0.7
698
Normal
-0.7
367
Tumor
-0.8
937
Tumor
-0.8
685
Tumor
-1.0
471
Tumor
N/A
351
Tumor
N/A
472
Normal
N/A
231
Tumor
N/A
352
Normal
N/A
473
Tumor
N/A
111
Normal
N/A
232
Normal
N/A
353
Tumor
N/A
474
Normal
N/A
112
Tumor
N/A
354
Normal
N/A
113
Tumor
N/A
114
Normal
N/A
477
Tumor
N/A
357
Tumor
N/A
478
Normal
N/A
358
Normal
N/A
481
Tumor
N/A
482
Normal
N/A
483
Tumor
N/A
484
Normal
N/A
123
Tumor
N/A
124
Normal
N/A
487
Tumor
N/A
125
Tumor
N/A
488
Normal
N/A
126
Normal
N/A
127
Tumor
N/A
128
Normal
N/A
491
Tumor
N/A
492
Normal
N/A
493
Tumor
N/A
494
Normal
N/A
497
Tumor
N/A
498
Normal
N/A
257
Tumor
N/A
258
Normal
N/A
813
Tumor
N/A
814
Normal
N/A
261
Tumor
N/A
262
Normal
N/A
385
Tumor
N/A
386
Normal
N/A
387
Tumor
N/A
267
Tumor
N/A
388
Normal
N/A
268
Normal
N/A
1022
Normal
N/A
1021
Tumor
N/A
391
Tumor
N/A
271
Tumor
N/A
392
Normal
N/A
272
Normal
N/A
393
Tumor
N/A
394
Normal
N/A
395
Tumor
N/A
396
Normal
N/A
1032
Normal
N/A
1031
Tumor
N/A
283
Tumor
N/A
284
Normal
N/A
285
Tumor
N/A
286
Normal
N/A
1028
Normal
N/A
1027
Tumor
N/A
1026
Normal
N/A
1025
Tumor
N/A
723
Tumor
N/A
724
Normal
N/A
727
Tumor
N/A
728
Normal
N/A
1042
Normal
N/A
1041
Tumor
N/A
615
Tumor
N/A
616
Normal
N/A
737
Tumor
N/A
617
Tumor
N/A
738
Normal
N/A
618
Normal
N/A
741
Tumor
N/A
742
Normal
N/A
743
Tumor
N/A
744
Normal
N/A
745
Tumor
N/A
746
Normal
N/A
627
Tumor
N/A
628
Normal
N/A
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
755
Tumor
N/A
635
Tumor
N/A
756
Normal
N/A
636
Normal
N/A
641
Tumor
N/A
642
Normal
N/A
647
Tumor
N/A
648
Normal
N/A
777
Tumor
N/A
778
Normal
N/A
661
Tumor
N/A
662
Normal
N/A
663
Tumor
N/A
664
Normal
N/A
785
Tumor
N/A
665
Tumor
N/A
786
Normal
N/A
666
Normal
N/A
671
Tumor
N/A
672
Normal
N/A
431
Tumor
N/A
432
Normal
N/A
433
Tumor
N/A
434
Normal
N/A
435
Tumor
N/A
436
Normal
N/A
557
Tumor
N/A
558
Normal
N/A
563
Tumor
N/A
443
Tumor
N/A
564
Normal
N/A
444
Normal
N/A
445
Tumor
N/A
446
Normal
N/A
567
Tumor
N/A
568
Normal
N/A
571
Tumor
N/A
572
Normal
N/A
573
Tumor
N/A
211
Tumor
N/A
574
Normal
N/A
212
Normal
N/A
213
Tumor
N/A
214
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
461
Tumor
N/A
341
Tumor
N/A
462
Normal
N/A
221
Tumor
N/A
342
Normal
N/A
222
Normal
N/A
343
Tumor
N/A
223
Tumor
N/A
344
Normal
N/A
224
Normal
N/A
227
Tumor
N/A
228
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
