MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:17.2 nTPM
HPA Brain:24.5 nTPM
GTEx:17.2 nTPM
FANTOM5:20.1 Scaled Tags Per Million
Pig:11.1 nTPM
Mouse:11.8 nTPM
Allen mouse:0.5 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 24.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 22.1
2586 Male, age 75, left hemisphere 27.5
2828 Female, age 72, unknown 25.6
2666 Male, age 74, left hemisphere 25.2
1830 Male, age 51, unknown 22.1
1827 Male, age 72, unknown 21.3
1833 Male, age 53, unknown 21.2
1870 Female, age 42, unknown 20.5
2019 Male, age 18, unknown 19.9
2411 Female, age 72, unknown 18.8
2219 Male, age 76, both hemispheres 18.6
Dorsal raphe nucleus
nTPM: 21.0
2016 Female, age 72, unknown 22.8
1828 Male, age 53, unknown 21.7
2047 Male, age 72, unknown 20.3
2298 Female, age 72, unknown 20.1
2750 Male, age 76, both hemispheres 20.1
Inferior colliculus
nTPM: 18.7
1848 Female, age 42, unknown 20.0
1890 Male, age 53, unknown 19.0
2849 Male, age 72, unknown 19.0
2097 Female, age 72, unknown 16.9
Median raphe nucleus
nTPM: 18.1
2220 Male, age 76, midline 18.1
Periaquaductal grey, anterior
nTPM: 21.4
1795 Male, age 51, unknown 25.1
2502 Female, age 75, unknown 20.7
1947 Male, age 18, unknown 18.4
Periaquaductal grey, dorsal
nTPM: 20.8
1831 Male, age 72, unknown 23.5
1840 Male, age 53, unknown 20.9
2464 Female, age 72, unknown 19.5
2850 Male, age 76, both hemispheres 19.3
Periaquaductal grey, lateral
nTPM: 24.5
2272 Male, age 74, both hemispheres 26.3
2140 Male, age 76, both hemispheres 23.8
2053 Male, age 18, unknown 23.4
Pretectal area
nTPM: 21.1
2407 Male, age 75, both hemispheres 28.8
2316 Male, age 76, right hemisphere 25.3
2273 Male, age 74, both hemispheres 23.3
2825 Male, age 18, unknown 21.5
2224 Female, age 72, unknown 20.4
1815 Male, age 53, unknown 19.7
1944 Female, age 72, unknown 19.7
2667 Female, age 75, unknown 19.3
2007 Male, age 72, unknown 18.6
1816 Male, age 51, unknown 18.5
1817 Female, age 42, unknown 17.4
Red nucleus
nTPM: 20.9
2584 Male, age 75, left hemisphere 27.1
2823 Male, age 76, right hemisphere 24.9
2227 Male, age 72, unknown 23.5
2769 Male, age 72, unknown 22.6
2785 Male, age 18, unknown 22.5
2725 Female, age 75, unknown 20.3
1904 Male, age 53, unknown 19.9
1865 Male, age 51, unknown 19.2
2503 Female, age 72, unknown 18.7
2588 Male, age 74, left hemisphere 18.5
1954 Female, age 42, unknown 18.2
1821 Female, age 72, unknown 15.6
Substantia nigra
nTPM: 23.1
2665 Male, age 74, both hemispheres 32.0
2583 Male, age 75, right hemisphere 31.8
2590 Female, age 75, unknown 31.4
2699 Male, age 18, unknown 27.4
1851 Male, age 51, unknown 20.6
1916 Female, age 42, unknown 20.1
1941 Male, age 53, unknown 17.8
2241 Male, age 72, unknown 17.0
2409 Female, age 72, unknown 16.7
1889 Female, age 72, unknown 15.9
Superior colliculus
nTPM: 23.0
2664 Male, age 75, both hemispheres 33.3
1995 Male, age 72, unknown 24.8
1839 Male, age 51, unknown 24.3
1913 Female, age 42, unknown 24.1
1796 Male, age 53, unknown 23.6
2087 Female, age 72, unknown 23.0
2587 Male, age 74, left hemisphere 22.4
2261 Male, age 18, unknown 21.7
2668 Female, age 75, unknown 18.1
1895 Male, age 76, right hemisphere 15.1
Ventral tegmental area
nTPM: 21.3
2021 Male, age 53, unknown 27.3
1942 Male, age 51, unknown 21.7
2218 Male, age 76, both hemispheres 20.8
2410 Female, age 72, unknown 20.3
1915 Female, age 42, unknown 19.8
2223 Female, age 72, unknown 18.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 17.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 17.2
Samples: 139

Max nTPM: 47.5
Min nTPM: 7.2
Std nTPM: 5.3
Median nTPM: 16.4
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 47.5
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 35.8
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 32.2
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 30.7
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 28.3
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 27.1
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 26.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 25.3
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 24.6
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 24.6
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 24.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 20.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 20.1
FF:10158-103A5 76 years, female 20.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 11.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 10.8
Samples: 4

Max nTPM: 11.5
Min nTPM: 9.7
Sample A Female 11.5
Sample B Female 11.1
Sample C Male 10.8
Sample D Male 9.7
Midbrain
nTPM: 10.2
Samples: 4

Max nTPM: 11.1
Min nTPM: 9.3
Sample A Female 10.5
Sample B Female 9.3
Sample C Male 11.1
Sample D Male 9.7
Periaqueductal gray
nTPM: 9.1
Samples: 3

Max nTPM: 9.8
Min nTPM: 7.8
Sample B Female 9.8
Sample C Male 9.8
Sample D Male 7.8
Superior colliculi
nTPM: 11.1
Samples: 4

Max nTPM: 11.4
Min nTPM: 10.5
Sample A Female 11.4
Sample B Female 11.2
Sample C Male 11.3
Sample D Male 10.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 11.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 11.8
Samples: 4

Max nTPM: 13.0
Min nTPM: 10.3
Sample A Male 13.0
Sample B Male 10.3
Sample C Female 12.0
Sample D Female 11.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
71020892 Antisense, RP_050510_04_F10, Mouse strain C57BL/6J (56 days, male) 0.5

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