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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DUSP23 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
155.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
883.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
718.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
586.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
533.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
508.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
449.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
448.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
406.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
403.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
401.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
399.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
393.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
383.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
370.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
359.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
358.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
356.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
356.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
343.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
339.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
337.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
318.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
317.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
303.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
299.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
295.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
293.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
292.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
287.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
280.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
280.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
268.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
263.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
260.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
259.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
257.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
255.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
249.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
246.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
246.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
244.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
241.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
240.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
238.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
237.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
232.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
231.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
230.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
229.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
227.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
225.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
224.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
223.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
222.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
222.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
221.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
220.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
219.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
217.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
215.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
214.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
213.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
212.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
208.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
207.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
205.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
205.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
204.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
203.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
202.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
201.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
195.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
195.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
194.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
194.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
193.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
193.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
192.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
192.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
190.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
190.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
190.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
189.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
189.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
189.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
187.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
186.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
186.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
186.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
185.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
184.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
184.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
183.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
183.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
183.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
181.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
179.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
179.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
178.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
178.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
178.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
177.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
176.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
176.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
175.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
173.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
173.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
173.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
173.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
173.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
173.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
172.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
172.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
171.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
170.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
168.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
168.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
167.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
166.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
166.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
165.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
165.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
163.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
161.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
161.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
160.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
160.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
159.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
159.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
158.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
158.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
158.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
157.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
157.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
156.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
156.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
156.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
156.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
155.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
153.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
152.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
152.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
151.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
151.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
151.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
150.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
150.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
149.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
149.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
148.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
148.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
148.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
147.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
146.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
145.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
144.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
143.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
143.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
143.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
142.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
142.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
142.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
141.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
141.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
141.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
140.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
140.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
139.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
139.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
139.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
137.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
134.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
133.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
133.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
133.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
133.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
132.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
132.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
131.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
131.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
129.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
129.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
128.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
128.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
127.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
127.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
126.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
125.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
125.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
125.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
124.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
124.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
123.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
123.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
123.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
122.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
122.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
121.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
121.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
120.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
120.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
120.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
119.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
118.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
118.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
118.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
118.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
118.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
118.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
117.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
117.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
117.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
117.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
116.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
116.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
116.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
115.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
115.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
115.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
114.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
113.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
113.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
113.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
113.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
113.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
112.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
112.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
112.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
112.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
111.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
111.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
111.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
111.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
111.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
111.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
110.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
110.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
110.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
109.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
109.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
109.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
108.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
107.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
106.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
105.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
105.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
105.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
105.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
105.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
104.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
104.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
104.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
103.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
103.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
103.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
103.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
103.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
103.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
102.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
102.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
102.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
102.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
102.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
101.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
101.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
101.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
101.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
100.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
99.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
98.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
98.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
97.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
97.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
97.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
97.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
97.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
96.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
96.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
96.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
95.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
94.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
93.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
93.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
93.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
92.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
92.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
89.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
89.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
88.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
88.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
87.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
87.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
87.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
87.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
86.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
86.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
86.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
86.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
86.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
85.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
85.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
84.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
84.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
84.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
83.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
82.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
82.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
81.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
78.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
77.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
77.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
77.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
77.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
77.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
76.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
75.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
74.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
74.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
73.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
72.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
72.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
72.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
72.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
72.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
70.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
70.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
70.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
70.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
69.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
68.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
68.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
68.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
67.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
67.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
66.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
65.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
65.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
64.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
64.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
63.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
63.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
63.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
62.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
61.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
59.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
58.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
58.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
56.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
52.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
52.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
51.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
50.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
48.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
47.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
41.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
41.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
38.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
35.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
26.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
19.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
18.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DUSP23 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
88.7
Number of samples
231
Samples
Sample
Description
TPM
DO50829
0 years, male, NA, stage:3, alive, 570 days
443.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
441.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
313.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
306.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
279.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
269.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
263.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
257.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
237.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
233.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
220.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
218.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
218.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
215.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
215.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
211.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
203.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
201.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
199.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
196.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
184.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
184.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
183.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
180.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
174.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
164.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
159.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
158.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
155.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
151.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
148.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
148.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
142.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
140.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
137.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
136.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
135.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
134.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
132.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
130.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
127.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
126.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
124.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
124.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
116.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
116.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
116.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
115.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
115.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
113.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
113.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
111.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
110.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
108.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
107.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
106.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
105.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
104.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
103.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
102.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
102.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
101.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
100.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
100.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
99.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
99.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
96.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
95.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
93.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
92.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
92.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
92.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
91.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
91.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
91.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
88.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
88.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
87.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
85.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
84.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
84.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
83.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
83.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
82.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
82.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
82.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
82.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
82.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
80.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
80.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
80.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
79.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
79.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
78.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
78.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
77.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
77.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
76.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
75.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
74.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
74.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
74.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
73.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
73.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
72.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
71.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
71.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
71.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
71.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
71.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
71.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
70.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
70.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
69.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
69.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
69.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
69.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
68.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
68.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
68.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
67.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
67.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
67.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
67.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
66.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
66.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
66.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
66.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
65.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
64.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
64.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
64.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
64.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
64.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
63.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
62.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
62.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
62.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
61.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
61.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
60.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
60.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
60.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
60.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
59.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
59.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
58.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
58.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
57.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
56.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
56.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
56.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
55.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
55.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
55.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
54.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
54.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
54.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
53.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
53.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
52.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
52.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
52.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
52.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
51.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
51.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
51.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
51.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
50.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
50.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
50.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
50.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
49.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
49.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
48.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
47.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
47.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
47.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
46.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
46.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
46.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
46.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
46.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
45.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
45.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
45.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
45.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
44.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
44.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
42.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
42.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
42.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
40.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
40.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
39.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
39.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
39.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
38.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
37.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
35.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
35.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
34.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
34.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
34.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
34.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
33.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
33.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
33.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
33.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
31.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
30.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
30.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
29.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
29.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
29.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
28.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
28.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
27.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
26.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
25.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
25.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
24.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
22.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
22.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
20.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
18.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
16.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
16.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
11.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
10.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
7.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
957
Tumor
1.5
313
Tumor
1.2
161
Tumor
1.2
147
Tumor
1.1
953
Tumor
0.9
393
Tumor
0.9
395
Tumor
0.9
525
Tumor
0.9
427
Tumor
0.9
125
Tumor
0.9
257
Tumor
0.8
357
Tumor
0.8
567
Tumor
0.8
411
Tumor
0.8
573
Tumor
0.7
925
Tumor
0.7
557
Tumor
0.7
435
Tumor
0.7
777
Tumor
0.7
1027
Tumor
0.7
361
Tumor
0.6
191
Tumor
0.6
343
Tumor
0.6
327
Tumor
0.6
387
Tumor
0.6
267
Tumor
0.5
477
Tumor
0.5
491
Tumor
0.5
123
Tumor
0.5
277
Tumor
0.5
375
Tumor
0.5
937
Tumor
0.5
745
Tumor
0.5
857
Tumor
0.4
915
Tumor
0.4
665
Tumor
0.4
533
Tumor
0.4
965
Tumor
0.4
231
Tumor
0.3
487
Tumor
0.3
697
Tumor
0.3
951
Tumor
0.3
187
Tumor
0.3
213
Tumor
0.3
867
Tumor
0.3
523
Tumor
0.3
911
Tumor
0.3
663
Tumor
0.3
1021
Tumor
0.3
141
Tumor
0.3
1013
Tumor
0.3
537
Tumor
0.3
425
Tumor
0.3
467
Tumor
0.3
981
Tumor
0.3
451
Tumor
0.2
647
Tumor
0.2
851
Tumor
0.2
873
Tumor
0.2
271
Tumor
0.2
465
Tumor
0.2
433
Tumor
0.2
171
Tumor
0.2
861
Tumor
0.2
913
Tumor
0.2
221
Tumor
0.2
755
Tumor
0.2
443
Tumor
0.2
445
Tumor
0.2
1025
Tumor
0.2
817
Tumor
0.2
415
Tumor
0.1
195
Tumor
0.1
721
Tumor
0.1
823
Tumor
0.1
185
Tumor
0.1
865
Tumor
0.1
497
Tumor
0.1
355
Tumor
0.1
785
Tumor
0.1
641
Tumor
0.1
1041
Tumor
0.1
464
Normal
0.1
463
Tumor
0.1
218
Normal
0.1
1043
Tumor
0.1
1031
Tumor
0.1
383
Tumor
0.1
921
Tumor
0.0
615
Tumor
0.0
648
Normal
0.0
727
Tumor
0.0
137
Tumor
0.0
553
Tumor
0.0
883
Tumor
0.0
298
Normal
0.0
695
Tumor
0.0
977
Tumor
0.0
452
Normal
0.0
1015
Tumor
0.0
391
Tumor
0.0
388
Normal
0.0
297
Tumor
0.0
471
Tumor
0.0
431
Tumor
0.0
392
Normal
0.0
515
Tumor
0.0
396
Normal
0.0
376
Normal
0.0
635
Tumor
0.0
135
Tumor
0.0
332
Normal
0.0
423
Tumor
0.0
162
Normal
0.0
493
Tumor
0.0
217
Tumor
0.0
466
Normal
0.0
563
Tumor
-0.1
923
Tumor
-0.1
394
Normal
-0.1
446
Normal
-0.1
311
Tumor
-0.1
285
Tumor
-0.1
368
Normal
-0.1
636
Normal
-0.1
223
Tumor
-0.1
426
Normal
-0.1
314
Normal
-0.1
278
Normal
-0.1
172
Normal
-0.1
286
Normal
-0.1
113
Tumor
-0.1
258
Normal
-0.1
353
Tumor
-0.1
527
Tumor
-0.1
483
Tumor
-0.1
1028
Normal
-0.1
571
Tumor
-0.1
132
Normal
-0.1
232
Normal
-0.1
545
Tumor
-0.1
642
Normal
-0.1
148
Normal
-0.1
124
Normal
-0.1
672
Normal
-0.1
1022
Normal
-0.1
975
Tumor
-0.1
131
Tumor
-0.1
227
Tumor
-0.1
741
Tumor
-0.1
436
Normal
-0.1
386
Normal
-0.1
564
Normal
-0.1
666
Normal
-0.2
344
Normal
-0.2
186
Normal
-0.2
456
Normal
-0.2
196
Normal
-0.2
384
Normal
-0.2
778
Normal
-0.2
568
Normal
-0.2
488
Normal
-0.2
952
Normal
-0.2
746
Normal
-0.2
955
Tumor
-0.2
526
Normal
-0.2
742
Normal
-0.2
312
Normal
-0.2
432
Normal
-0.2
145
Tumor
-0.2
786
Normal
-0.2
737
Tumor
-0.2
728
Normal
-0.2
272
Normal
-0.2
984
Normal
-0.2
554
Normal
-0.2
574
Normal
-0.2
331
Tumor
-0.2
136
Normal
-0.2
358
Normal
-0.2
356
Normal
-0.2
696
Normal
-0.2
363
Tumor
-0.2
268
Normal
-0.2
513
Tumor
-0.2
698
Normal
-0.2
1014
Normal
-0.2
664
Normal
-0.2
918
Normal
-0.2
1026
Normal
-0.2
481
Tumor
-0.2
142
Normal
-0.2
261
Tumor
-0.2
924
Normal
-0.2
878
Normal
-0.2
128
Normal
-0.2
1016
Normal
-0.2
114
Normal
-0.2
944
Normal
-0.2
484
Normal
-0.3
813
Tumor
-0.3
616
Normal
-0.3
685
Tumor
-0.3
214
Normal
-0.3
627
Tumor
-0.3
138
Normal
-0.3
618
Normal
-0.3
572
Normal
-0.3
412
Normal
-0.3
444
Normal
-0.3
192
Normal
-0.3
756
Normal
-0.3
365
Tumor
-0.3
111
Normal
-0.3
517
Tumor
-0.3
943
Tumor
-0.3
341
Tumor
-0.3
468
Normal
-0.3
414
Normal
-0.3
422
Normal
-0.3
428
Normal
-0.3
1032
Normal
-0.3
222
Normal
-0.3
262
Normal
-0.3
715
Tumor
-0.3
461
Tumor
-0.3
514
Normal
-0.3
738
Normal
-0.3
364
Normal
-0.3
352
Normal
-0.3
473
Tumor
-0.3
926
Normal
-0.3
818
Normal
-0.3
662
Normal
-0.3
558
Normal
-0.3
212
Normal
-0.3
858
Normal
-0.3
342
Normal
-0.3
954
Normal
-0.3
983
Tumor
-0.3
938
Normal
-0.3
416
Normal
-0.3
328
Normal
-0.3
824
Normal
-0.3
283
Tumor
-0.3
982
Normal
-0.3
816
Normal
-0.3
127
Tumor
-0.3
424
Normal
-0.3
354
Normal
-0.3
963
Tumor
-0.4
713
Tumor
-0.4
518
Normal
-0.4
671
Tumor
-0.4
462
Normal
-0.4
421
Tumor
-0.4
455
Tumor
-0.4
492
Normal
-0.4
956
Normal
-0.4
524
Normal
-0.4
978
Normal
-0.4
434
Normal
-0.4
881
Tumor
-0.4
916
Normal
-0.4
628
Normal
-0.4
474
Normal
-0.4
528
Normal
-0.4
228
Normal
-0.4
494
Normal
-0.4
447
Tumor
-0.4
534
Normal
-0.4
714
Normal
-0.4
922
Normal
-0.4
448
Normal
-0.4
385
Tumor
-0.4
224
Normal
-0.4
866
Normal
-0.4
884
Normal
-0.4
1046
Normal
-0.4
498
Normal
-0.4
546
Normal
-0.4
617
Tumor
-0.4
284
Normal
-0.4
882
Normal
-0.4
686
Normal
-0.4
874
Normal
-0.4
482
Normal
-0.4
188
Normal
-0.4
536
Normal
-0.4
1042
Normal
-0.4
516
Normal
-0.4
126
Normal
-0.4
1045
Tumor
-0.4
744
Normal
-0.5
472
Normal
-0.5
722
Normal
-0.5
968
Normal
-0.5
362
Normal
-0.5
862
Normal
-0.5
814
Normal
-0.5
366
Normal
-0.5
351
Tumor
-0.5
716
Normal
-0.5
538
Normal
-0.5
1044
Normal
-0.5
863
Tumor
-0.5
964
Normal
-0.5
912
Normal
-0.5
852
Normal
-0.5
868
Normal
-0.6
966
Normal
-0.6
864
Normal
-0.6
413
Tumor
-0.6
917
Tumor
-0.6
914
Normal
-0.6
723
Tumor
-0.6
478
Normal
-0.6
146
Normal
-0.6
976
Normal
-0.6
211
Tumor
-0.7
535
Tumor
-0.7
958
Normal
-0.7
661
Tumor
-0.7
815
Tumor
-0.7
743
Tumor
-0.8
112
Tumor
-0.8
367
Tumor
-0.8
967
Tumor
-0.9
877
Tumor
-0.9
724
Normal
-0.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.