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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PAGE5 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
384.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
374.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
330.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
271.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
261.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
242.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
240.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
208.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
199.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
179.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
178.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
167.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
152.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
133.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
125.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
123.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
120.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
114.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
109.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
97.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
86.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
81.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
66.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
64.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
63.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
63.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
52.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
50.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
44.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
41.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
31.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
29.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
25.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
25.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
23.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
22.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
20.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
19.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
18.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
15.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
15.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
14.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
13.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
13.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
13.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
11.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
10.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
10.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
10.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
9.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
8.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
7.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
7.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
7.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
7.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
6.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
6.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
6.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
5.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
5.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
4.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
4.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
4.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
4.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
4.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
4.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
3.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
3.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
3.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
2.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
2.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
2.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
2.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
2.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
2.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
1.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
1.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
1.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
1.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
1.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
1.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
1.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
1.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
1.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
1.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
1.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
1.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
1.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
1.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
1.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
1.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
1.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
1.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
1.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
1.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
0.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
0.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
0.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
0.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
0.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
0.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
0.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
0.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
0.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
0.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
0.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
0.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
0.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
0.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
0.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
0.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
0.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
0.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
0.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
0.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
0.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
0.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
0.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
0.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
0.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
0.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
0.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
0.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
0.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
0.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
0.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
0.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
0.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
0.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
0.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
0.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
0.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
0.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
0.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
0.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
0.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
0.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
0.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
0.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
0.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
0.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
0.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
0.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
0.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
0.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
0.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
0.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
0.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
0.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
0.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
0.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
0.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
0.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
0.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
0.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
0.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
0.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
0.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
0.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
0.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
0.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
0.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
0.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
0.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
0.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
0.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
0.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
0.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
0.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
0.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
0.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
0.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
0.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
0.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
0.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
0.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
0.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
0.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
0.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
0.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
0.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
0.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
0.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
0.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
0.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
0.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
0.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
0.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
0.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
0.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
0.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
0.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
0.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
0.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
0.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
0.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
0.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
0.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
0.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
0.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
0.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
0.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
0.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
0.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
0.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
0.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
0.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
0.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
0.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
0.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
0.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
0.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
0.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
0.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
0.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
0.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
0.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
0.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
0.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
0.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
0.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
0.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
0.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
0.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
0.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
0.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
0.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
0.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
0.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
0.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
0.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
0.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PAGE5 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.1
Number of samples
231
Samples
Sample
Description
TPM
DO23513
0 years, male, NA, stage:3, alive, 1200 days
457.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
262.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
212.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
208.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
178.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
151.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
128.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
126.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
113.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
111.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
104.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
102.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
93.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
82.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
76.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
72.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
69.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
68.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
53.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
50.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
46.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
42.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
40.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
37.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
34.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
28.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
26.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
24.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
16.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
15.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
14.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
12.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
12.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
11.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
10.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
9.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
9.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
9.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
8.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
6.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
6.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
6.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
6.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
5.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
5.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
5.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
4.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
4.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
4.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
3.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
3.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
3.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
3.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
3.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
3.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
2.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
2.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
2.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
2.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
1.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
1.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
1.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
1.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
1.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
1.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
1.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
1.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
1.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
1.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
1.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
1.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
1.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
1.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
0.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
0.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
0.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
0.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
0.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
0.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
0.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
0.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
0.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
0.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
0.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
0.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
0.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
0.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
0.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
0.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
0.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
0.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
0.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
0.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
0.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
0.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
0.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
0.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
0.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
0.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
0.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
0.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
0.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
0.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
0.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
0.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
0.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
0.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
0.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
0.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
0.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
0.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
0.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
0.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
0.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
0.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
0.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
0.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
0.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
0.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
0.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
0.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
0.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
0.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
0.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
0.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
0.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
0.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
0.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
0.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
0.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
0.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
0.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
0.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
0.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
0.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
0.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
0.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
0.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
0.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
0.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
0.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
0.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
0.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
0.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
0.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
0.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
0.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
0.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
0.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
0.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
0.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
0.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
0.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
0.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
0.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
0.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
0.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
0.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
0.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
0.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
0.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
0.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
0.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
0.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
0.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
0.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
0.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
0.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
0.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
0.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
0.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
0.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
0.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
0.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
0.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
0.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
0.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
0.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
0.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
0.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
0.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
0.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
0.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
0.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
0.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
0.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
0.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
0.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
0.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
0.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
0.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
0.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
0.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
0.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
0.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
0.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
0.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
0.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
0.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
0.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
0.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
0.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
0.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
0.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
0.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
0.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
0.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
0.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
0.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
615
Tumor
4.0
785
Tumor
3.6
433
Tumor
3.5
537
Tumor
3.3
647
Tumor
3.2
937
Tumor
3.2
361
Tumor
3.2
283
Tumor
3.1
341
Tumor
3.1
487
Tumor
3.1
387
Tumor
3.0
573
Tumor
2.9
123
Tumor
2.9
391
Tumor
2.8
635
Tumor
2.4
367
Tumor
2.2
965
Tumor
2.2
741
Tumor
2.2
137
Tumor
2.1
483
Tumor
1.9
473
Tumor
1.8
127
Tumor
1.6
777
Tumor
1.6
311
Tumor
1.5
217
Tumor
1.2
873
Tumor
0.9
297
Tumor
0.5
786
Normal
0.5
851
Tumor
0.3
1045
Tumor
0.3
223
Tumor
0.2
574
Normal
0.1
648
Normal
0.1
388
Normal
0.0
863
Tumor
-0.2
257
Tumor
-0.3
938
Normal
-0.3
488
Normal
-0.3
616
Normal
-0.3
474
Normal
-0.4
572
Normal
-0.5
124
Normal
-0.5
636
Normal
-0.5
538
Normal
-0.5
365
Tumor
-0.5
484
Normal
-0.6
617
Tumor
-0.6
434
Normal
-0.6
432
Normal
-0.7
724
Normal
-0.7
944
Normal
-0.7
392
Normal
-0.7
111
Normal
-0.7
564
Normal
-0.7
444
Normal
-0.7
481
Tumor
-0.7
284
Normal
-0.7
497
Tumor
-0.8
568
Normal
-0.8
627
Tumor
-0.8
535
Tumor
-0.8
126
Normal
-0.8
534
Normal
-0.8
112
Tumor
-0.8
778
Normal
-0.8
858
Normal
-0.8
386
Normal
-0.8
368
Normal
-0.9
824
Normal
-0.9
114
Normal
-0.9
666
Normal
-0.9
125
Tumor
-0.9
943
Tumor
-0.9
818
Normal
-0.9
618
Normal
-0.9
396
Normal
-1.0
642
Normal
-1.0
228
Normal
-1.0
435
Tumor
-1.0
362
Normal
-1.0
558
Normal
-1.0
966
Normal
-1.0
366
Normal
-1.0
113
Tumor
-1.0
571
Tumor
-1.0
128
Normal
-1.1
964
Normal
-1.1
816
Normal
-1.1
343
Tumor
-1.1
628
Normal
-1.1
267
Tumor
-1.1
482
Normal
-1.1
286
Normal
-1.1
436
Normal
-1.1
925
Tumor
-1.1
494
Normal
-1.1
852
Normal
-1.1
954
Normal
-1.2
913
Tumor
-1.2
956
Normal
-1.2
955
Tumor
-1.2
138
Normal
-1.2
554
Normal
-1.2
866
Normal
-1.2
224
Normal
-1.2
528
Normal
-1.3
546
Normal
-1.3
563
Tumor
-1.3
415
Tumor
-1.3
498
Normal
-1.3
342
Normal
-1.3
141
Tumor
-1.3
446
Normal
-1.3
545
Tumor
-1.3
136
Normal
-1.3
394
Normal
-1.3
864
Normal
-1.4
385
Tumor
-1.4
491
Tumor
-1.4
278
Normal
-1.4
814
Normal
-1.4
431
Tumor
-1.4
376
Normal
-1.4
868
Normal
-1.4
332
Normal
-1.4
867
Tumor
-1.4
857
Tumor
-1.4
314
Normal
-1.4
445
Tumor
-1.4
384
Normal
-1.4
393
Tumor
-1.5
976
Normal
-1.5
958
Normal
-1.5
212
Normal
-1.5
146
Normal
-1.5
492
Normal
-1.5
911
Tumor
-1.5
756
Normal
-1.5
312
Normal
-1.5
298
Normal
-1.5
533
Tumor
-1.5
672
Normal
-1.6
1046
Normal
-1.6
142
Normal
-1.6
443
Tumor
-1.6
567
Tumor
-1.6
952
Normal
-1.6
232
Normal
-1.6
462
Normal
-1.6
145
Tumor
-1.6
922
Normal
-1.6
472
Normal
-1.6
823
Tumor
-1.6
862
Normal
-1.7
746
Normal
-1.7
662
Normal
-1.7
354
Normal
-1.7
953
Tumor
-1.7
918
Normal
-1.7
395
Tumor
-1.7
664
Normal
-1.7
874
Normal
-1.7
926
Normal
-1.8
227
Tumor
-1.8
364
Normal
-1.8
352
Normal
-1.8
951
Tumor
-1.8
641
Tumor
-1.9
968
Normal
-1.9
375
Tumor
-1.9
557
Tumor
-1.9
527
Tumor
-1.9
745
Tumor
-1.9
977
Tumor
-1.9
861
Tumor
-1.9
478
Normal
-2.0
493
Tumor
-2.0
665
Tumor
-2.0
755
Tumor
-2.0
428
Normal
-2.0
132
Normal
-2.0
917
Tumor
-2.0
744
Normal
-2.0
815
Tumor
-2.1
383
Tumor
-2.1
813
Tumor
-2.1
222
Normal
-2.1
353
Tumor
-2.1
313
Tumor
-2.1
461
Tumor
-2.1
356
Normal
-2.1
663
Tumor
-2.1
416
Normal
-2.1
715
Tumor
-2.1
721
Tumor
-2.2
1044
Normal
-2.2
331
Tumor
-2.2
162
Normal
-2.2
424
Normal
-2.2
912
Normal
-2.2
975
Tumor
-2.2
351
Tumor
-2.2
328
Normal
-2.2
817
Tumor
-2.2
261
Tumor
-2.2
915
Tumor
-2.2
277
Tumor
-2.2
924
Normal
-2.2
161
Tumor
-2.3
285
Tumor
-2.3
148
Normal
-2.3
135
Tumor
-2.3
344
Normal
-2.3
914
Normal
-2.3
661
Tumor
-2.3
358
Normal
-2.3
671
Tumor
-2.4
878
Normal
-2.4
518
Normal
-2.4
363
Tumor
-2.4
448
Normal
-2.4
422
Normal
-2.4
516
Normal
-2.4
967
Tumor
-2.4
186
Normal
-2.4
211
Tumor
-2.4
963
Tumor
-2.4
262
Normal
-2.4
268
Normal
-2.4
882
Normal
-2.4
513
Tumor
-2.4
1016
Normal
-2.4
192
Normal
-2.4
426
Normal
-2.4
916
Normal
-2.4
865
Tumor
-2.4
553
Tumor
-2.4
526
Normal
-2.4
172
Normal
-2.4
272
Normal
-2.5
423
Tumor
-2.5
738
Normal
-2.5
536
Normal
-2.5
728
Normal
-2.5
196
Normal
-2.5
411
Tumor
-2.5
982
Normal
-2.5
468
Normal
-2.5
414
Normal
-2.5
171
Tumor
-2.5
1014
Normal
-2.5
957
Tumor
-2.5
984
Normal
-2.5
456
Normal
-2.5
357
Tumor
-2.5
214
Normal
-2.5
412
Normal
-2.6
218
Normal
-2.6
131
Tumor
-2.6
187
Tumor
-2.6
698
Normal
-2.6
464
Normal
-2.6
1013
Tumor
-2.6
884
Normal
-2.7
355
Tumor
-2.7
231
Tumor
-2.7
471
Tumor
-2.7
195
Tumor
-2.7
465
Tumor
-2.7
722
Normal
-2.8
327
Tumor
-2.8
185
Tumor
-2.8
1026
Normal
-2.8
221
Tumor
-2.8
1032
Normal
-2.8
921
Tumor
-2.8
723
Tumor
-2.8
466
Normal
-2.8
1042
Normal
-2.8
695
Tumor
-2.8
923
Tumor
-2.9
978
Normal
-2.9
191
Tumor
-2.9
524
Normal
-2.9
1043
Tumor
-2.9
477
Tumor
-2.9
716
Normal
-2.9
188
Normal
-3.0
714
Normal
-3.0
696
Normal
-3.0
1041
Tumor
-3.0
514
Normal
-3.0
447
Tumor
-3.1
271
Tumor
-3.1
421
Tumor
-3.1
883
Tumor
-3.1
737
Tumor
-3.1
1015
Tumor
-3.2
515
Tumor
-3.2
877
Tumor
-3.2
517
Tumor
-3.2
525
Tumor
-3.2
1028
Normal
-3.3
1022
Normal
-3.3
455
Tumor
-3.3
463
Tumor
-3.3
213
Tumor
-3.4
697
Tumor
-3.4
467
Tumor
-3.4
413
Tumor
-3.4
981
Tumor
-3.5
147
Tumor
-3.5
451
Tumor
-3.5
881
Tumor
-3.5
258
Normal
-3.6
983
Tumor
-3.6
427
Tumor
-3.6
685
Tumor
-3.7
727
Tumor
-3.7
713
Tumor
-3.8
523
Tumor
-3.9
425
Tumor
-3.9
1025
Tumor
-3.9
1027
Tumor
-4.1
686
Normal
-4.3
1031
Tumor
-4.5
452
Normal
-4.7
1021
Tumor
-4.9
743
Tumor
-5.2
742
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.