MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:38.0 nTPM
HPA Brain:66.3 nTPM
GTEx:38.0 nTPM
FANTOM5:85.7 Scaled Tags Per Million
Pig:37.9 nTPM
Mouse:81.8 nTPM
Allen mouse:3.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 66.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 61.0
1833 Male, age 53, unknown 68.9
2019 Male, age 18, unknown 68.0
1870 Female, age 42, unknown 65.8
2411 Female, age 72, unknown 64.2
1830 Male, age 51, unknown 64.1
2586 Male, age 75, left hemisphere 58.4
2828 Female, age 72, unknown 58.2
1827 Male, age 72, unknown 56.0
2666 Male, age 74, left hemisphere 55.6
2219 Male, age 76, both hemispheres 51.2
Dorsal raphe nucleus
nTPM: 62.8
2750 Male, age 76, both hemispheres 67.5
2298 Female, age 72, unknown 65.6
2016 Female, age 72, unknown 64.9
1828 Male, age 53, unknown 60.6
2047 Male, age 72, unknown 55.2
Inferior colliculus
nTPM: 55.9
2097 Female, age 72, unknown 61.3
1890 Male, age 53, unknown 57.1
1848 Female, age 42, unknown 54.1
2849 Male, age 72, unknown 51.1
Median raphe nucleus
nTPM: 60.2
2220 Male, age 76, midline 60.2
Periaquaductal grey, anterior
nTPM: 59.2
2502 Female, age 75, unknown 64.4
1947 Male, age 18, unknown 59.5
1795 Male, age 51, unknown 53.8
Periaquaductal grey, dorsal
nTPM: 57.9
2850 Male, age 76, both hemispheres 63.1
2464 Female, age 72, unknown 62.0
1840 Male, age 53, unknown 53.5
1831 Male, age 72, unknown 52.9
Periaquaductal grey, lateral
nTPM: 61.9
2272 Male, age 74, both hemispheres 64.4
2140 Male, age 76, both hemispheres 63.8
2053 Male, age 18, unknown 57.6
Pretectal area
nTPM: 59.6
2273 Male, age 74, both hemispheres 67.7
2316 Male, age 76, right hemisphere 66.7
2667 Female, age 75, unknown 64.4
2224 Female, age 72, unknown 61.8
1815 Male, age 53, unknown 60.0
2825 Male, age 18, unknown 59.0
1817 Female, age 42, unknown 58.5
2407 Male, age 75, both hemispheres 58.3
2007 Male, age 72, unknown 57.5
1816 Male, age 51, unknown 53.5
1944 Female, age 72, unknown 47.9
Red nucleus
nTPM: 66.3
1904 Male, age 53, unknown 73.4
1821 Female, age 72, unknown 72.8
1865 Male, age 51, unknown 72.4
2769 Male, age 72, unknown 71.2
2227 Male, age 72, unknown 70.1
1954 Female, age 42, unknown 68.4
2823 Male, age 76, right hemisphere 65.6
2785 Male, age 18, unknown 65.3
2503 Female, age 72, unknown 60.4
2584 Male, age 75, left hemisphere 60.1
2725 Female, age 75, unknown 58.4
2588 Male, age 74, left hemisphere 57.2
Substantia nigra
nTPM: 58.7
2241 Male, age 72, unknown 67.5
2409 Female, age 72, unknown 66.0
1851 Male, age 51, unknown 62.5
2699 Male, age 18, unknown 59.8
2590 Female, age 75, unknown 57.6
1889 Female, age 72, unknown 56.9
1916 Female, age 42, unknown 56.7
2583 Male, age 75, right hemisphere 56.1
2665 Male, age 74, both hemispheres 52.5
1941 Male, age 53, unknown 51.7
Superior colliculus
nTPM: 59.6
1913 Female, age 42, unknown 69.4
1995 Male, age 72, unknown 67.9
1839 Male, age 51, unknown 60.4
2587 Male, age 74, left hemisphere 59.5
2664 Male, age 75, both hemispheres 58.7
2668 Female, age 75, unknown 57.7
2261 Male, age 18, unknown 56.4
1895 Male, age 76, right hemisphere 56.2
1796 Male, age 53, unknown 55.8
2087 Female, age 72, unknown 54.2
Ventral tegmental area
nTPM: 60.5
2223 Female, age 72, unknown 66.6
2021 Male, age 53, unknown 62.2
2218 Male, age 76, both hemispheres 60.4
2410 Female, age 72, unknown 59.5
1942 Male, age 51, unknown 58.6
1915 Female, age 42, unknown 55.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 38.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 38.0
Samples: 139

Max nTPM: 64.4
Min nTPM: 21.2
Std nTPM: 7.5
Median nTPM: 37.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 64.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 61.8
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 60.0
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 58.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 56.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 55.3
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 55.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 54.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 54.3
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 52.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 51.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 85.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 85.7
FF:10158-103A5 76 years, female 85.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 37.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 32.3
Samples: 4

Max nTPM: 38.2
Min nTPM: 29.5
Sample A Female 38.2
Sample B Female 31.1
Sample C Male 30.4
Sample D Male 29.5
Midbrain
nTPM: 32.4
Samples: 4

Max nTPM: 39.4
Min nTPM: 27.2
Sample A Female 39.4
Sample B Female 27.2
Sample C Male 30.7
Sample D Male 32.4
Periaqueductal gray
nTPM: 32.7
Samples: 3

Max nTPM: 34.7
Min nTPM: 29.7
Sample B Female 29.7
Sample C Male 34.7
Sample D Male 33.8
Superior colliculi
nTPM: 37.9
Samples: 4

Max nTPM: 44.4
Min nTPM: 31.2
Sample A Female 42.5
Sample B Female 44.4
Sample C Male 31.2
Sample D Male 33.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 81.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 81.8
Samples: 4

Max nTPM: 84.6
Min nTPM: 78.8
Sample A Male 84.6
Sample B Male 78.8
Sample C Female 79.7
Sample D Female 83.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.2
68148749 Antisense, RP_041116_02_B01, Mouse strain C57BL/6J (56 days, male) 3.2

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