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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
0.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
9.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
5.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
5.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
4.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
4.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
4.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
4.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
3.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
3.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
3.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
2.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
2.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
2.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
2.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
2.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
2.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
2.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
2.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
2.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
1.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
1.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
1.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
1.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
1.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
1.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
1.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
1.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
1.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
1.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
1.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
1.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
1.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
1.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
1.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
1.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
1.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
1.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
1.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
1.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
1.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
1.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
1.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
1.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
1.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
1.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
1.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
1.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
1.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
1.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
1.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
1.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
1.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
1.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
1.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
1.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
1.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
1.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
1.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
1.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
1.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
1.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
1.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
1.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
1.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
1.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
1.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
1.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
1.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
1.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
0.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
0.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
0.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
0.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
0.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
0.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
0.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
0.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
0.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
0.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
0.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
0.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
0.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
0.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
0.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
0.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
0.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
0.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
0.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
0.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
0.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
0.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
0.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
0.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
0.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
0.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
0.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
0.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
0.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
0.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
0.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
0.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
0.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
0.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
0.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
0.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
0.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
0.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
0.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
0.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
0.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
0.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
0.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
0.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
0.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
0.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
0.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
0.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
0.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
0.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
0.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
0.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
0.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
0.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
0.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
0.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
0.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
0.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
0.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
0.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
0.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
0.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
0.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
0.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
0.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
0.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
0.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
0.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
0.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
0.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
0.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
0.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
0.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
0.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
0.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
0.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
0.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
0.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
0.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
0.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
0.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
0.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
0.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
0.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
0.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
0.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
0.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
0.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
0.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
0.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
0.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
0.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
0.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
0.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
0.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
0.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
0.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
0.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
0.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
0.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
0.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
0.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
0.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
0.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
0.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
0.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
0.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
0.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
0.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
0.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
0.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
0.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
0.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
0.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
0.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
0.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
0.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
0.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
0.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
0.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
0.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
0.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
0.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
0.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
0.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
0.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
0.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
0.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
0.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
0.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
0.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
0.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
0.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
0.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
0.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
0.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
0.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
0.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
0.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
0.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
0.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
0.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
0.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
0.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
0.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
0.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
0.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
0.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
0.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
0.8
Number of samples
231
Samples
Sample
Description
TPM
DO45189
0 years, female, NA, stage:2, alive, 1200 days
16.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
7.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
7.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
6.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
6.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
5.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
4.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
4.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
4.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
3.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
3.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
3.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
3.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
2.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
2.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
2.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
2.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
2.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
2.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
2.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
2.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
2.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
2.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
2.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
2.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
2.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
2.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
2.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
2.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
2.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
2.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
2.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
2.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
2.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
1.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
1.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
1.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
1.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
1.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
1.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
1.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
1.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
1.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
1.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
1.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
1.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
1.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
1.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
1.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
1.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
1.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
1.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
1.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
1.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
1.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
1.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
1.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
1.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
1.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
1.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
1.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
1.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
0.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
0.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
0.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
0.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
0.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
0.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
0.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
0.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
0.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
0.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
0.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
0.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
0.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
0.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
0.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
0.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
0.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
0.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
0.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
0.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
0.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
0.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
0.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
0.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
0.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
0.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
0.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
0.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
0.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
0.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
0.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
0.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
0.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
0.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
0.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
0.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
0.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
0.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
0.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
0.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
0.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
0.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
0.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
0.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
0.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
0.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
0.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
0.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
0.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
0.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
0.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
0.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
0.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
0.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
0.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
0.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
0.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
0.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
0.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
0.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
0.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
0.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
0.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
0.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
0.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
0.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
0.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
0.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
0.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
0.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
0.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
0.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
0.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
0.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
0.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
0.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
0.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
0.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
0.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
0.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
0.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
0.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
0.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
0.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
0.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
0.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
0.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
0.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
0.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
0.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
0.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
0.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
0.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
0.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
0.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
0.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
0.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
0.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
0.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
0.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
0.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
0.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
0.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
0.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
0.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
0.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
0.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
0.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
0.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
0.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
0.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
0.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
0.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
0.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
0.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
0.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
0.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
0.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
0.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
0.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
0.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
0.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
0.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
0.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
0.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
0.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
0.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
0.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
0.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
0.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
0.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
0.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
0.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
0.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
0.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
0.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
0.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
0.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
0.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
0.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
0.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
0.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
0.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
0.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
0.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
0.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
0.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
0.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
967
Tumor
1.8
917
Tumor
1.3
881
Tumor
1.3
957
Tumor
1.3
877
Tumor
1.3
975
Tumor
1.2
351
Tumor
1.2
1021
Tumor
1.1
661
Tumor
1.1
1027
Tumor
1.0
943
Tumor
1.0
641
Tumor
1.0
743
Tumor
0.9
271
Tumor
0.9
823
Tumor
0.9
297
Tumor
0.8
515
Tumor
0.8
192
Normal
0.8
635
Tumor
0.8
1031
Tumor
0.8
341
Tumor
0.8
536
Normal
0.8
211
Tumor
0.8
814
Normal
0.8
483
Tumor
0.7
478
Normal
0.7
517
Tumor
0.7
425
Tumor
0.7
467
Tumor
0.7
257
Tumor
0.7
126
Normal
0.7
545
Tumor
0.6
415
Tumor
0.6
533
Tumor
0.6
147
Tumor
0.6
343
Tumor
0.6
447
Tumor
0.6
283
Tumor
0.6
444
Normal
0.6
1025
Tumor
0.6
311
Tumor
0.6
213
Tumor
0.5
671
Tumor
0.5
491
Tumor
0.5
124
Normal
0.5
331
Tumor
0.5
375
Tumor
0.5
427
Tumor
0.5
493
Tumor
0.5
492
Normal
0.5
185
Tumor
0.5
434
Normal
0.5
386
Normal
0.5
778
Normal
0.5
721
Tumor
0.5
473
Tumor
0.4
455
Tumor
0.4
498
Normal
0.4
813
Tumor
0.4
724
Normal
0.4
951
Tumor
0.4
385
Tumor
0.4
851
Tumor
0.4
563
Tumor
0.4
195
Tumor
0.4
553
Tumor
0.4
686
Normal
0.4
817
Tumor
0.4
146
Normal
0.4
471
Tumor
0.4
535
Tumor
0.4
171
Tumor
0.4
451
Tumor
0.3
916
Normal
0.3
713
Tumor
0.3
364
Normal
0.3
363
Tumor
0.3
461
Tumor
0.3
1044
Normal
0.3
355
Tumor
0.3
367
Tumor
0.3
224
Normal
0.3
727
Tumor
0.3
786
Normal
0.3
472
Normal
0.3
268
Normal
0.3
538
Normal
0.3
383
Tumor
0.3
387
Tumor
0.3
574
Normal
0.3
131
Tumor
0.2
217
Tumor
0.2
777
Tumor
0.2
285
Tumor
0.2
464
Normal
0.2
452
Normal
0.2
416
Normal
0.2
328
Normal
0.2
857
Tumor
0.2
923
Tumor
0.2
138
Normal
0.2
1045
Tumor
0.2
716
Normal
0.2
865
Tumor
0.2
395
Tumor
0.2
697
Tumor
0.2
976
Normal
0.1
463
Tumor
0.1
685
Tumor
0.1
456
Normal
0.1
412
Normal
0.1
921
Tumor
0.1
785
Tumor
0.1
113
Tumor
0.1
114
Normal
0.1
396
Normal
0.1
497
Tumor
0.1
414
Normal
0.1
223
Tumor
0.1
421
Tumor
0.1
212
Normal
0.1
746
Normal
0.1
161
Tumor
0.1
142
Normal
0.1
468
Normal
0.1
394
Normal
0.1
525
Tumor
0.1
433
Tumor
0.1
715
Tumor
0.1
391
Tumor
0.1
227
Tumor
0.1
284
Normal
0.0
218
Normal
0.0
111
Normal
0.0
571
Tumor
0.0
524
Normal
0.0
392
Normal
0.0
214
Normal
0.0
188
Normal
0.0
665
Tumor
0.0
756
Normal
0.0
191
Tumor
0.0
112
Tumor
0.0
388
Normal
0.0
272
Normal
0.0
953
Tumor
0.0
968
Normal
0.0
696
Normal
0.0
1043
Tumor
0.0
573
Tumor
0.0
313
Tumor
0.0
567
Tumor
0.0
393
Tumor
0.0
815
Tumor
0.0
672
Normal
0.0
558
Normal
0.0
474
Normal
0.0
446
Normal
-0.1
863
Tumor
-0.1
361
Tumor
-0.1
145
Tumor
-0.1
366
Normal
-0.1
125
Tumor
-0.1
1046
Normal
-0.1
466
Normal
-0.1
356
Normal
-0.1
527
Tumor
-0.1
983
Tumor
-0.1
964
Normal
-0.1
432
Normal
-0.1
722
Normal
-0.1
141
Tumor
-0.1
362
Normal
-0.1
714
Normal
-0.1
352
Normal
-0.1
557
Tumor
-0.1
958
Normal
-0.1
262
Normal
-0.1
978
Normal
-0.1
365
Tumor
-0.1
448
Normal
-0.1
518
Normal
-0.1
554
Normal
-0.1
494
Normal
-0.1
127
Tumor
-0.1
428
Normal
-0.1
1014
Normal
-0.1
966
Normal
-0.1
312
Normal
-0.1
698
Normal
-0.1
413
Tumor
-0.2
424
Normal
-0.2
332
Normal
-0.2
984
Normal
-0.2
136
Normal
-0.2
221
Tumor
-0.2
426
Normal
-0.2
488
Normal
-0.2
954
Normal
-0.2
368
Normal
-0.2
443
Tumor
-0.2
572
Normal
-0.2
516
Normal
-0.2
956
Normal
-0.2
695
Tumor
-0.2
258
Normal
-0.2
135
Tumor
-0.2
737
Tumor
-0.2
924
Normal
-0.2
1022
Normal
-0.2
384
Normal
-0.2
728
Normal
-0.2
286
Normal
-0.2
477
Tumor
-0.2
636
Normal
-0.2
422
Normal
-0.2
1016
Normal
-0.2
528
Normal
-0.2
484
Normal
-0.2
982
Normal
-0.2
868
Normal
-0.3
298
Normal
-0.3
534
Normal
-0.3
952
Normal
-0.3
423
Tumor
-0.3
744
Normal
-0.3
376
Normal
-0.3
546
Normal
-0.3
874
Normal
-0.3
344
Normal
-0.3
662
Normal
-0.3
568
Normal
-0.3
745
Tumor
-0.3
922
Normal
-0.3
878
Normal
-0.3
1013
Tumor
-0.3
514
Normal
-0.3
1028
Normal
-0.3
128
Normal
-0.3
666
Normal
-0.3
445
Tumor
-0.3
564
Normal
-0.3
617
Tumor
-0.3
462
Normal
-0.3
1032
Normal
-0.3
852
Normal
-0.3
723
Tumor
-0.3
132
Normal
-0.3
664
Normal
-0.4
482
Normal
-0.4
222
Normal
-0.4
1042
Normal
-0.4
944
Normal
-0.4
965
Tumor
-0.4
918
Normal
-0.4
354
Normal
-0.4
884
Normal
-0.4
228
Normal
-0.4
537
Tumor
-0.4
861
Tumor
-0.4
818
Normal
-0.4
436
Normal
-0.4
231
Tumor
-0.4
411
Tumor
-0.5
327
Tumor
-0.5
196
Normal
-0.5
123
Tumor
-0.5
738
Normal
-0.5
816
Normal
-0.5
963
Tumor
-0.5
981
Tumor
-0.5
873
Tumor
-0.5
866
Normal
-0.5
526
Normal
-0.5
864
Normal
-0.5
755
Tumor
-0.5
278
Normal
-0.5
938
Normal
-0.5
1026
Normal
-0.5
232
Normal
-0.5
628
Normal
-0.5
1015
Tumor
-0.5
353
Tumor
-0.5
137
Tumor
-0.5
642
Normal
-0.5
926
Normal
-0.5
261
Tumor
-0.5
513
Tumor
-0.6
925
Tumor
-0.6
314
Normal
-0.6
267
Tumor
-0.6
867
Tumor
-0.6
882
Normal
-0.6
162
Normal
-0.6
148
Normal
-0.6
616
Normal
-0.6
465
Tumor
-0.6
172
Normal
-0.6
186
Normal
-0.6
487
Tumor
-0.6
187
Tumor
-0.6
862
Normal
-0.6
648
Normal
-0.6
915
Tumor
-0.7
627
Tumor
-0.7
481
Tumor
-0.7
912
Normal
-0.7
824
Normal
-0.7
883
Tumor
-0.7
358
Normal
-0.7
914
Normal
-0.8
435
Tumor
-0.8
977
Tumor
-0.8
858
Normal
-0.8
742
Normal
-0.8
741
Tumor
-0.8
523
Tumor
-0.8
342
Normal
-0.8
955
Tumor
-0.9
618
Normal
-0.9
647
Tumor
-0.9
431
Tumor
-1.0
1041
Tumor
-1.0
913
Tumor
-1.1
357
Tumor
-1.1
663
Tumor
-1.1
911
Tumor
-1.2
937
Tumor
-1.4
615
Tumor
-1.4
277
Tumor
-3.4
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
