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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CNOT11 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
19.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
99.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
73.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
70.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
63.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
59.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
56.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
56.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
55.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
54.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
53.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
53.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
52.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
50.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
48.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
48.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
47.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
46.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
46.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
45.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
44.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
43.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
43.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
42.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
40.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
39.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
39.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
39.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
39.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
38.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
38.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
38.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
38.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
38.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
37.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
37.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
36.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
36.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
35.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
35.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
35.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
35.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
35.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
34.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
34.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
34.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
34.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
33.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
33.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
32.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
32.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
32.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
32.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
32.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
31.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
31.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
30.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
30.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
30.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
30.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
29.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
29.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
29.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
29.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
29.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
29.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
28.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
28.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
28.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
28.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
28.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
28.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
27.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
27.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
27.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
27.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
27.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
27.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
26.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
26.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
26.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
25.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
25.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
25.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
25.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
24.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
24.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
24.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
24.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
24.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
24.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
24.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
23.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
23.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
23.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
23.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
23.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
23.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
23.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
23.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
23.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
22.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
22.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
22.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
22.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
22.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
22.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
22.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
22.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
22.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
21.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
21.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
21.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
21.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
21.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
21.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
21.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
21.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
21.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
21.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
20.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
20.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
20.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
20.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
20.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
20.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
20.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
20.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
20.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
19.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
19.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
19.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
19.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
19.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
19.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
18.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
18.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
18.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
18.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
18.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
18.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
18.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
18.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
18.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
18.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
18.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
18.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
18.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
18.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
18.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
18.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
18.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
18.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
18.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
18.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
17.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
17.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
17.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
17.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
17.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
17.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
17.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
17.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
17.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
17.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
17.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
17.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
17.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
17.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
17.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
17.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
17.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
17.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
17.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
17.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
17.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
17.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
16.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
16.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
16.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
16.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
16.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
16.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
16.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
16.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
16.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
16.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
16.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
16.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
16.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
15.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
15.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
15.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
15.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
15.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
15.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
15.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
15.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
15.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
15.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
15.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
15.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
15.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
15.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
15.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
15.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
15.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
14.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
14.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
14.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
14.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
14.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
14.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
14.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
14.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
14.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
14.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
14.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
13.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
13.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
13.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
13.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
13.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
13.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
13.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
13.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
13.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
13.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
13.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
13.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
13.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
13.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
13.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
13.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
13.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
13.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
13.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
13.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
13.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
13.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
13.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
12.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
12.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
12.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
12.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
12.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
12.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
12.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
12.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
12.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
12.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
12.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
12.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
12.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
12.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
12.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
12.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
12.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
12.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
12.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
12.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
12.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
12.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
12.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
12.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
12.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
12.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
12.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
12.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
12.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
11.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
11.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
11.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
11.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
11.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
11.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
11.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
11.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
11.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
11.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
11.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
11.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
11.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
11.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
11.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
11.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
10.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
10.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
10.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
10.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
10.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
10.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
10.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
10.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
10.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
10.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
10.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
10.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
10.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
10.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
10.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
10.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
10.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
10.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
10.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
10.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
10.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
10.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
9.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
9.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
9.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
9.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
9.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
9.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
9.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
9.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
9.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
9.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
9.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
9.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
9.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
9.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
9.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
9.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
9.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
9.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
9.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
9.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
9.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
9.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
8.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
8.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
8.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
8.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
8.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
8.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
8.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
8.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
8.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
8.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
7.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
7.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
7.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
7.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
7.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
7.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
7.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
7.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
7.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
7.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
7.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
7.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
6.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
6.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
6.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
6.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
6.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
6.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
6.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
6.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
5.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
951
Tumor
0.9
385
Tumor
0.7
395
Tumor
0.7
983
Tumor
0.7
391
Tumor
0.7
813
Tumor
0.6
393
Tumor
0.6
743
Tumor
0.6
396
Normal
0.6
388
Normal
0.6
285
Tumor
0.5
392
Normal
0.5
375
Tumor
0.5
386
Normal
0.5
965
Tumor
0.5
387
Tumor
0.5
351
Tumor
0.5
727
Tumor
0.5
394
Normal
0.4
943
Tumor
0.4
413
Tumor
0.4
937
Tumor
0.4
527
Tumor
0.4
463
Tumor
0.4
1021
Tumor
0.4
425
Tumor
0.4
131
Tumor
0.4
515
Tumor
0.4
863
Tumor
0.4
147
Tumor
0.4
953
Tumor
0.4
523
Tumor
0.3
851
Tumor
0.3
877
Tumor
0.3
481
Tumor
0.3
1015
Tumor
0.3
977
Tumor
0.3
737
Tumor
0.3
283
Tumor
0.3
353
Tumor
0.3
331
Tumor
0.3
815
Tumor
0.3
814
Normal
0.3
745
Tumor
0.3
865
Tumor
0.3
817
Tumor
0.3
777
Tumor
0.3
913
Tumor
0.3
567
Tumor
0.3
1013
Tumor
0.3
1043
Tumor
0.3
132
Normal
0.3
537
Tumor
0.3
724
Normal
0.2
455
Tumor
0.2
867
Tumor
0.2
332
Normal
0.2
517
Tumor
0.2
713
Tumor
0.2
533
Tumor
0.2
957
Tumor
0.2
427
Tumor
0.2
525
Tumor
0.2
445
Tumor
0.2
145
Tumor
0.2
1031
Tumor
0.2
715
Tumor
0.2
881
Tumor
0.2
383
Tumor
0.2
421
Tumor
0.2
473
Tumor
0.2
873
Tumor
0.2
146
Normal
0.2
367
Tumor
0.2
171
Tumor
0.2
277
Tumor
0.2
1027
Tumor
0.2
944
Normal
0.2
123
Tumor
0.2
435
Tumor
0.2
135
Tumor
0.2
376
Normal
0.2
113
Tumor
0.2
368
Normal
0.2
573
Tumor
0.2
148
Normal
0.2
433
Tumor
0.2
231
Tumor
0.2
267
Tumor
0.2
341
Tumor
0.2
112
Tumor
0.2
187
Tumor
0.1
467
Tumor
0.1
221
Tumor
0.1
136
Normal
0.1
471
Tumor
0.1
443
Tumor
0.1
271
Tumor
0.1
138
Normal
0.1
125
Tumor
0.1
137
Tumor
0.1
477
Tumor
0.1
981
Tumor
0.1
535
Tumor
0.1
574
Normal
0.1
482
Normal
0.1
211
Tumor
0.1
497
Tumor
0.1
186
Normal
0.1
1025
Tumor
0.1
461
Tumor
0.1
343
Tumor
0.1
257
Tumor
0.1
641
Tumor
0.1
518
Normal
0.1
431
Tumor
0.1
823
Tumor
0.1
955
Tumor
0.1
956
Normal
0.1
411
Tumor
0.1
468
Normal
0.1
661
Tumor
0.1
714
Normal
0.1
911
Tumor
0.1
563
Tumor
0.1
357
Tumor
0.1
478
Normal
0.1
161
Tumor
0.1
697
Tumor
0.1
366
Normal
0.1
424
Normal
0.1
384
Normal
0.1
978
Normal
0.1
365
Tumor
0.1
861
Tumor
0.1
327
Tumor
0.0
142
Normal
0.0
342
Normal
0.0
172
Normal
0.0
361
Tumor
0.0
857
Tumor
0.0
191
Tumor
0.0
975
Tumor
0.0
755
Tumor
0.0
954
Normal
0.0
162
Normal
0.0
696
Normal
0.0
564
Normal
0.0
921
Tumor
0.0
213
Tumor
0.0
472
Normal
0.0
528
Normal
0.0
785
Tumor
0.0
647
Tumor
0.0
952
Normal
0.0
1014
Normal
0.0
1045
Tumor
0.0
721
Tumor
0.0
923
Tumor
0.0
883
Tumor
0.0
447
Tumor
0.0
466
Normal
0.0
126
Normal
0.0
635
Tumor
0.0
141
Tumor
0.0
487
Tumor
0.0
217
Tumor
0.0
568
Normal
0.0
524
Normal
0.0
741
Tumor
0.0
557
Tumor
0.0
516
Normal
0.0
356
Normal
0.0
452
Normal
0.0
464
Normal
0.0
967
Tumor
0.0
451
Tumor
0.0
526
Normal
0.0
423
Tumor
0.0
545
Tumor
0.0
483
Tumor
0.0
456
Normal
0.0
127
Tumor
-0.1
572
Normal
-0.1
912
Normal
-0.1
1041
Tumor
-0.1
462
Normal
-0.1
465
Tumor
-0.1
917
Tumor
-0.1
1032
Normal
-0.1
558
Normal
-0.1
1026
Normal
-0.1
344
Normal
-0.1
716
Normal
-0.1
984
Normal
-0.1
262
Normal
-0.1
617
Tumor
-0.1
513
Tumor
-0.1
484
Normal
-0.1
185
Tumor
-0.1
474
Normal
-0.1
874
Normal
-0.1
553
Tumor
-0.1
314
Normal
-0.1
864
Normal
-0.1
571
Tumor
-0.1
744
Normal
-0.1
866
Normal
-0.1
188
Normal
-0.1
352
Normal
-0.1
272
Normal
-0.1
1042
Normal
-0.1
492
Normal
-0.1
114
Normal
-0.1
491
Tumor
-0.1
671
Tumor
-0.1
268
Normal
-0.1
818
Normal
-0.1
1016
Normal
-0.1
362
Normal
-0.1
313
Tumor
-0.1
534
Normal
-0.1
722
Normal
-0.1
111
Normal
-0.1
1044
Normal
-0.1
232
Normal
-0.1
448
Normal
-0.2
627
Tumor
-0.2
358
Normal
-0.2
695
Tumor
-0.2
728
Normal
-0.2
1046
Normal
-0.2
546
Normal
-0.2
416
Normal
-0.2
212
Normal
-0.2
258
Normal
-0.2
434
Normal
-0.2
925
Tumor
-0.2
1028
Normal
-0.2
514
Normal
-0.2
914
Normal
-0.2
124
Normal
-0.2
428
Normal
-0.2
286
Normal
-0.2
938
Normal
-0.2
422
Normal
-0.2
412
Normal
-0.2
354
Normal
-0.2
261
Tumor
-0.2
195
Tumor
-0.2
858
Normal
-0.2
642
Normal
-0.2
868
Normal
-0.2
363
Tumor
-0.2
982
Normal
-0.2
284
Normal
-0.2
128
Normal
-0.2
852
Normal
-0.2
816
Normal
-0.2
824
Normal
-0.2
494
Normal
-0.2
862
Normal
-0.2
493
Tumor
-0.2
663
Tumor
-0.2
756
Normal
-0.2
355
Tumor
-0.2
926
Normal
-0.2
444
Normal
-0.2
436
Normal
-0.2
628
Normal
-0.2
446
Normal
-0.2
686
Normal
-0.2
882
Normal
-0.2
488
Normal
-0.2
922
Normal
-0.2
918
Normal
-0.3
884
Normal
-0.3
778
Normal
-0.3
278
Normal
-0.3
742
Normal
-0.3
298
Normal
-0.3
723
Tumor
-0.3
328
Normal
-0.3
786
Normal
-0.3
227
Tumor
-0.3
685
Tumor
-0.3
636
Normal
-0.3
218
Normal
-0.3
228
Normal
-0.3
312
Normal
-0.3
616
Normal
-0.3
364
Normal
-0.3
618
Normal
-0.3
924
Normal
-0.3
214
Normal
-0.3
222
Normal
-0.3
916
Normal
-0.3
554
Normal
-0.3
966
Normal
-0.3
311
Tumor
-0.3
915
Tumor
-0.3
196
Normal
-0.3
698
Normal
-0.3
615
Tumor
-0.3
878
Normal
-0.3
415
Tumor
-0.3
1022
Normal
-0.3
536
Normal
-0.3
223
Tumor
-0.3
498
Normal
-0.3
224
Normal
-0.3
665
Tumor
-0.3
192
Normal
-0.3
662
Normal
-0.4
746
Normal
-0.4
738
Normal
-0.4
968
Normal
-0.4
538
Normal
-0.4
958
Normal
-0.4
414
Normal
-0.4
963
Tumor
-0.4
426
Normal
-0.4
664
Normal
-0.4
432
Normal
-0.4
976
Normal
-0.4
672
Normal
-0.4
297
Tumor
-0.4
964
Normal
-0.5
666
Normal
-0.5
648
Normal
-0.6
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
