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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
EIF5B is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
18.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
57.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
55.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
55.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
54.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
46.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
43.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
41.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
40.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
39.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
39.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
39.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
36.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
34.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
34.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
34.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
34.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
34.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
33.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
33.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
32.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
32.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
32.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
31.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
31.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
30.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
29.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
29.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
29.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
29.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
29.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
29.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
29.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
28.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
28.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
28.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
28.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
27.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
27.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
27.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
27.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
27.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
27.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
27.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
27.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
27.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
26.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
26.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
26.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
26.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
26.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
26.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
25.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
25.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
25.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
25.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
24.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
24.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
24.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
24.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
24.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
24.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
24.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
24.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
24.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
23.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
23.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
23.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
23.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
23.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
23.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
23.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
23.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
23.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
23.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
23.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
23.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
22.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
22.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
22.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
22.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
22.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
22.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
22.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
22.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
22.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
22.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
22.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
22.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
22.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
21.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
21.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
21.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
21.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
21.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
21.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
21.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
21.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
21.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
21.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
21.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
21.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
21.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
20.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
20.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
20.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
20.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
20.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
20.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
20.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
20.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
20.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
20.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
20.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
20.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
20.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
20.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
20.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
20.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
20.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
20.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
20.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
20.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
19.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
19.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
19.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
19.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
19.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
19.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
19.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
19.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
19.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
19.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
19.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
19.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
18.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
18.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
18.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
18.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
18.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
18.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
18.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
18.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
18.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
18.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
18.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
18.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
18.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
18.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
18.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
18.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
18.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
18.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
17.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
17.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
17.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
17.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
17.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
17.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
17.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
17.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
17.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
17.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
17.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
17.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
17.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
17.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
17.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
17.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
17.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
17.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
17.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
17.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
16.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
16.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
16.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
16.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
16.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
16.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
16.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
16.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
16.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
16.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
16.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
16.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
16.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
16.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
16.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
16.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
16.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
16.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
16.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
16.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
16.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
16.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
16.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
16.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
16.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
16.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
15.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
15.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
15.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
15.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
15.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
15.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
15.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
15.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
15.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
15.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
15.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
15.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
15.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
15.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
15.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
15.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
15.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
15.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
15.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
15.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
15.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
15.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
15.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
15.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
15.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
15.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
15.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
14.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
14.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
14.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
14.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
14.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
14.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
14.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
14.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
14.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
14.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
14.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
14.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
14.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
14.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
14.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
14.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
14.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
14.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
14.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
14.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
14.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
14.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
13.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
13.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
13.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
13.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
13.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
13.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
13.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
13.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
13.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
13.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
13.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
13.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
13.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
13.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
13.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
13.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
13.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
13.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
13.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
13.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
13.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
13.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
13.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
13.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
13.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
13.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
13.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
13.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
13.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
12.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
12.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
12.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
12.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
12.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
12.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
12.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
12.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
12.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
12.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
12.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
12.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
12.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
12.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
12.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
12.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
12.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
12.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
12.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
12.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
12.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
12.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
12.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
12.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
12.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
12.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
12.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
11.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
11.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
11.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
11.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
11.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
11.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
11.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
11.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
11.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
11.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
11.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
11.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
11.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
11.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
11.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
11.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
11.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
10.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
10.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
10.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
10.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
10.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
10.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
10.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
10.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
10.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
10.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
10.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
10.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
10.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
10.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
10.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
10.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
10.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
10.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
9.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
9.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
9.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
9.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
9.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
9.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
9.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
9.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
9.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
9.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
9.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
8.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
8.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
8.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
8.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
7.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
7.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
7.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
6.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
6.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
6.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
6.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
6.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
EIF5B is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
24.7
Number of samples
231
Samples
Sample
Description
TPM
DO45149
0 years, female, NA, stage:2, alive, 1260 days
82.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
74.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
60.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
54.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
49.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
49.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
47.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
45.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
44.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
43.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
42.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
40.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
40.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
39.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
39.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
38.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
37.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
37.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
37.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
36.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
34.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
34.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
34.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
34.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
34.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
34.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
33.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
33.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
33.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
33.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
33.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
32.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
32.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
32.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
32.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
32.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
31.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
31.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
31.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
31.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
30.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
30.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
30.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
30.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
30.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
30.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
29.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
29.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
29.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
29.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
29.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
29.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
28.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
28.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
28.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
28.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
28.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
28.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
28.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
27.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
27.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
27.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
27.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
27.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
27.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
27.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
27.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
27.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
27.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
26.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
26.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
26.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
26.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
26.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
26.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
26.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
26.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
26.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
26.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
26.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
26.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
25.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
25.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
25.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
25.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
25.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
25.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
25.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
25.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
25.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
25.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
25.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
25.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
25.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
24.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
24.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
24.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
24.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
24.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
24.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
24.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
24.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
24.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
24.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
23.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
23.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
23.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
23.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
23.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
23.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
23.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
23.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
23.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
23.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
23.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
23.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
23.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
23.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
23.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
23.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
23.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
22.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
22.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
22.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
22.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
22.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
22.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
22.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
22.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
22.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
21.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
21.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
21.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
21.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
21.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
21.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
21.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
21.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
21.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
21.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
21.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
20.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
20.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
20.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
20.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
20.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
20.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
20.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
20.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
20.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
20.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
20.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
20.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
20.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
19.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
19.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
19.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
19.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
19.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
19.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
19.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
19.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
19.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
19.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
19.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
19.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
19.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
19.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
19.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
19.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
19.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
19.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
18.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
18.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
18.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
18.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
18.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
18.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
17.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
17.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
17.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
17.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
17.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
17.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
17.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
17.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
17.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
17.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
17.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
17.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
17.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
17.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
16.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
16.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
16.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
16.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
16.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
16.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
16.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
16.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
16.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
16.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
16.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
16.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
16.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
15.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
15.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
15.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
15.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
14.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
14.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
14.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
14.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
14.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
14.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
14.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
14.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
14.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
14.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
14.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
13.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
13.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
13.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
13.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
13.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
13.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
11.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
11.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
11.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
10.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
10.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
665
Tumor
1.1
537
Tumor
0.8
1021
Tumor
0.8
727
Tumor
0.7
425
Tumor
0.7
285
Tumor
0.7
567
Tumor
0.6
967
Tumor
0.6
171
Tumor
0.6
724
Normal
0.6
965
Tumor
0.6
951
Tumor
0.6
1031
Tumor
0.6
223
Tumor
0.5
661
Tumor
0.5
525
Tumor
0.5
471
Tumor
0.5
745
Tumor
0.5
477
Tumor
0.5
743
Tumor
0.5
983
Tumor
0.5
227
Tumor
0.5
367
Tumor
0.4
1025
Tumor
0.4
815
Tumor
0.4
1015
Tumor
0.4
473
Tumor
0.4
443
Tumor
0.4
341
Tumor
0.4
513
Tumor
0.4
1013
Tumor
0.4
327
Tumor
0.4
387
Tumor
0.4
123
Tumor
0.4
497
Tumor
0.4
817
Tumor
0.4
925
Tumor
0.4
883
Tumor
0.4
957
Tumor
0.3
785
Tumor
0.3
557
Tumor
0.3
851
Tumor
0.3
331
Tumor
0.3
211
Tumor
0.3
523
Tumor
0.3
483
Tumor
0.3
737
Tumor
0.3
533
Tumor
0.3
391
Tumor
0.3
861
Tumor
0.3
527
Tumor
0.3
515
Tumor
0.3
915
Tumor
0.3
755
Tumor
0.3
517
Tumor
0.3
867
Tumor
0.2
435
Tumor
0.2
137
Tumor
0.2
671
Tumor
0.2
493
Tumor
0.2
283
Tumor
0.2
385
Tumor
0.2
923
Tumor
0.2
573
Tumor
0.2
363
Tumor
0.2
913
Tumor
0.2
431
Tumor
0.2
357
Tumor
0.2
131
Tumor
0.2
445
Tumor
0.2
447
Tumor
0.2
953
Tumor
0.2
977
Tumor
0.2
943
Tumor
0.2
873
Tumor
0.2
113
Tumor
0.2
353
Tumor
0.2
427
Tumor
0.2
937
Tumor
0.2
147
Tumor
0.2
461
Tumor
0.2
647
Tumor
0.2
395
Tumor
0.1
715
Tumor
0.1
975
Tumor
0.1
415
Tumor
0.1
741
Tumor
0.1
393
Tumor
0.1
981
Tumor
0.1
231
Tumor
0.1
217
Tumor
0.1
365
Tumor
0.1
963
Tumor
0.1
697
Tumor
0.1
257
Tumor
0.1
297
Tumor
0.1
313
Tumor
0.1
1043
Tumor
0.1
635
Tumor
0.1
881
Tumor
0.1
455
Tumor
0.1
267
Tumor
0.1
563
Tumor
0.1
545
Tumor
0.1
911
Tumor
0.1
127
Tumor
0.1
777
Tumor
0.1
814
Normal
0.1
663
Tumor
0.1
487
Tumor
0.1
863
Tumor
0.1
865
Tumor
0.1
617
Tumor
0.1
1041
Tumor
0.1
451
Tumor
0.1
187
Tumor
0.1
553
Tumor
0.1
191
Tumor
0.1
413
Tumor
0.1
467
Tumor
0.1
535
Tumor
0.1
615
Tumor
0.1
1045
Tumor
0.1
261
Tumor
0.1
955
Tumor
0.1
721
Tumor
0.1
271
Tumor
0.0
351
Tumor
0.0
355
Tumor
0.0
375
Tumor
0.0
221
Tumor
0.0
421
Tumor
0.0
966
Normal
0.0
433
Tumor
0.0
311
Tumor
0.0
135
Tumor
0.0
465
Tumor
0.0
185
Tumor
0.0
924
Normal
0.0
641
Tumor
0.0
481
Tumor
0.0
921
Tumor
0.0
411
Tumor
0.0
112
Tumor
0.0
213
Tumor
0.0
161
Tumor
0.0
864
Normal
0.0
944
Normal
0.0
1028
Normal
-0.1
813
Tumor
-0.1
361
Tumor
-0.1
852
Normal
-0.1
1026
Normal
-0.1
756
Normal
-0.1
917
Tumor
-0.1
195
Tumor
-0.1
1022
Normal
-0.1
436
Normal
-0.1
823
Tumor
-0.1
546
Normal
-0.1
746
Normal
-0.1
1044
Normal
-0.1
463
Tumor
-0.1
956
Normal
-0.1
474
Normal
-0.1
857
Tumor
-0.1
141
Tumor
-0.1
492
Normal
-0.1
145
Tumor
-0.1
926
Normal
-0.1
714
Normal
-0.1
918
Normal
-0.1
778
Normal
-0.1
912
Normal
-0.1
916
Normal
-0.1
536
Normal
-0.1
862
Normal
-0.1
356
Normal
-0.1
723
Tumor
-0.1
952
Normal
-0.1
964
Normal
-0.1
954
Normal
-0.1
514
Normal
-0.1
938
Normal
-0.1
922
Normal
-0.1
232
Normal
-0.1
571
Tumor
-0.1
858
Normal
-0.1
412
Normal
-0.1
228
Normal
-0.1
284
Normal
-0.1
978
Normal
-0.1
494
Normal
-0.1
484
Normal
-0.1
958
Normal
-0.1
722
Normal
-0.1
212
Normal
-0.1
696
Normal
-0.1
728
Normal
-0.1
448
Normal
-0.1
516
Normal
-0.1
698
Normal
-0.1
286
Normal
-0.1
224
Normal
-0.1
686
Normal
-0.1
528
Normal
-0.1
968
Normal
-0.1
558
Normal
-0.1
432
Normal
-0.1
685
Tumor
-0.1
262
Normal
-0.1
884
Normal
-0.1
478
Normal
-0.1
416
Normal
-0.1
534
Normal
-0.1
383
Tumor
-0.1
488
Normal
-0.1
713
Tumor
-0.2
738
Normal
-0.2
616
Normal
-0.2
568
Normal
-0.2
424
Normal
-0.2
1014
Normal
-0.2
444
Normal
-0.2
434
Normal
-0.2
518
Normal
-0.2
142
Normal
-0.2
866
Normal
-0.2
627
Tumor
-0.2
1032
Normal
-0.2
564
Normal
-0.2
364
Normal
-0.2
538
Normal
-0.2
524
Normal
-0.2
414
Normal
-0.2
446
Normal
-0.2
462
Normal
-0.2
472
Normal
-0.2
868
Normal
-0.2
786
Normal
-0.2
388
Normal
-0.2
976
Normal
-0.2
1046
Normal
-0.2
422
Normal
-0.2
818
Normal
-0.2
482
Normal
-0.2
298
Normal
-0.2
914
Normal
-0.2
466
Normal
-0.2
878
Normal
-0.2
426
Normal
-0.2
423
Tumor
-0.2
636
Normal
-0.2
572
Normal
-0.2
128
Normal
-0.2
628
Normal
-0.2
742
Normal
-0.2
648
Normal
-0.2
816
Normal
-0.2
1042
Normal
-0.2
824
Normal
-0.2
148
Normal
-0.2
716
Normal
-0.2
272
Normal
-0.2
526
Normal
-0.2
376
Normal
-0.2
984
Normal
-0.2
874
Normal
-0.2
428
Normal
-0.2
384
Normal
-0.2
258
Normal
-0.2
554
Normal
-0.2
452
Normal
-0.2
343
Tumor
-0.2
188
Normal
-0.2
877
Tumor
-0.2
664
Normal
-0.2
214
Normal
-0.2
196
Normal
-0.2
186
Normal
-0.2
662
Normal
-0.2
172
Normal
-0.2
332
Normal
-0.2
882
Normal
-0.2
328
Normal
-0.2
1016
Normal
-0.2
982
Normal
-0.3
498
Normal
-0.3
468
Normal
-0.3
124
Normal
-0.3
386
Normal
-0.3
368
Normal
-0.3
574
Normal
-0.3
392
Normal
-0.3
366
Normal
-0.3
222
Normal
-0.3
491
Tumor
-0.3
114
Normal
-0.3
666
Normal
-0.3
268
Normal
-0.3
396
Normal
-0.3
162
Normal
-0.3
362
Normal
-0.3
138
Normal
-0.3
695
Tumor
-0.3
278
Normal
-0.3
218
Normal
-0.3
132
Normal
-0.3
111
Normal
-0.3
146
Normal
-0.3
126
Normal
-0.3
136
Normal
-0.3
618
Normal
-0.3
277
Tumor
-0.3
394
Normal
-0.3
672
Normal
-0.3
642
Normal
-0.4
456
Normal
-0.4
312
Normal
-0.4
464
Normal
-0.4
744
Normal
-0.4
314
Normal
-0.4
192
Normal
-0.4
358
Normal
-0.4
352
Normal
-0.4
344
Normal
-0.4
342
Normal
-0.4
125
Tumor
-0.4
1027
Tumor
-0.4
354
Normal
-0.5
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
