We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MITD1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
36.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
35.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
33.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
32.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
26.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
25.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
25.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
25.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
24.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
23.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
21.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
21.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
21.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
20.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
20.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
20.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
20.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
19.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
18.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
18.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
18.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
17.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
16.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
16.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
16.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
16.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
16.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
16.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
16.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
16.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
15.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
15.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
15.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
15.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
15.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
15.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
15.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
15.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
15.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
15.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
15.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
14.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
14.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
14.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
14.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
14.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
14.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
14.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
14.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
14.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
14.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
14.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
13.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
13.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
13.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
13.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
13.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
13.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
13.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
13.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
13.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
13.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
12.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
12.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
12.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
12.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
12.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
12.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
12.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
12.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
12.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
12.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
12.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
12.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
12.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
12.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
12.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
12.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
11.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
11.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
11.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
11.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
11.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
11.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
11.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
11.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
11.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
11.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
11.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
11.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
11.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
11.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
11.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
11.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
11.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
11.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
11.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
11.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
11.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
11.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
11.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
10.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
10.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
10.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
10.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
10.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
10.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
10.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
10.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
10.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
10.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
10.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
10.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
10.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
10.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
10.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
10.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
10.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
10.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
10.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
10.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
10.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
10.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
10.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
10.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
10.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
10.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
9.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
9.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
9.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
9.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
9.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
9.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
9.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
9.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
9.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
9.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
9.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
9.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
9.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
9.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
9.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
9.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
9.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
9.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
9.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
9.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
9.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
9.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
9.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
9.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
9.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
9.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
9.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
9.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
9.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
9.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
9.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
9.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
9.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
9.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
9.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
9.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
8.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
8.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
8.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
8.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
8.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
8.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
8.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
8.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
8.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
8.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
8.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
8.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
8.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
8.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
8.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
8.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
8.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
8.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
8.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
8.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
8.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
8.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
8.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
8.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
8.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
8.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
8.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
8.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
8.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
8.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
8.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
8.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
8.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
8.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
8.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
8.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
8.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
8.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
8.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
8.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
8.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
8.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
8.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
8.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
8.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
8.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
8.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
8.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
8.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
7.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
7.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
7.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
7.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
7.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
7.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
7.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
7.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
7.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
7.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
7.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
7.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
7.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
7.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
7.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
7.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
7.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
7.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
7.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
7.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
7.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
7.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
7.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
7.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
7.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
7.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
7.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
7.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
7.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
7.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
7.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
7.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
7.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
7.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
7.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
7.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
7.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
7.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
7.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
7.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
7.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
7.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
7.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
7.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
7.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
6.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
6.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
6.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
6.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
6.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
6.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
6.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
6.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
6.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
6.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
6.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
6.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
6.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
6.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
6.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
6.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
6.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
6.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
6.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
6.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
6.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
6.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
6.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
6.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
6.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
6.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
6.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
6.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
6.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
6.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
6.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
6.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
6.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
6.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
5.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
5.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
5.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
5.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
5.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
5.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
5.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
5.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
5.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
5.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
5.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
5.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
5.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
5.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
5.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
5.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
5.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
5.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
5.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
5.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
5.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
5.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
5.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
5.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
5.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
5.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
5.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
5.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
5.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
5.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
4.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
4.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
4.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
4.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
4.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
4.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
4.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
3.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MITD1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
19.1
Number of samples
231
Samples
Sample
Description
TPM
DO45145
0 years, male, NA, stage:3, dead, 60 days
70.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
61.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
52.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
48.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
40.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
40.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
38.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
38.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
37.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
36.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
36.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
35.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
34.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
33.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
33.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
32.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
32.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
32.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
31.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
31.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
31.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
30.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
30.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
29.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
29.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
28.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
28.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
28.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
27.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
27.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
27.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
27.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
26.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
26.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
26.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
26.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
26.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
26.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
25.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
25.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
25.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
25.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
25.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
25.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
25.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
25.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
24.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
24.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
24.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
24.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
24.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
24.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
24.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
24.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
23.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
23.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
23.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
23.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
22.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
22.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
22.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
22.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
22.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
22.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
22.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
22.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
22.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
22.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
22.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
21.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
21.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
21.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
21.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
21.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
21.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
21.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
21.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
20.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
20.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
20.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
20.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
19.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
19.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
19.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
19.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
19.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
19.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
19.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
19.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
19.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
19.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
19.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
19.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
19.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
18.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
18.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
18.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
18.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
18.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
18.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
18.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
18.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
18.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
18.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
18.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
18.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
18.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
18.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
17.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
17.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
17.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
17.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
17.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
17.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
17.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
17.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
17.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
17.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
17.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
17.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
16.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
16.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
16.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
16.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
16.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
16.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
16.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
16.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
16.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
16.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
16.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
16.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
16.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
16.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
16.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
16.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
16.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
16.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
16.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
15.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
15.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
15.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
15.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
15.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
15.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
15.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
15.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
15.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
15.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
15.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
15.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
15.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
15.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
15.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
14.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
14.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
14.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
14.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
14.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
14.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
14.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
14.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
14.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
14.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
14.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
14.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
14.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
13.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
13.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
13.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
13.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
13.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
13.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
13.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
12.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
12.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
12.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
12.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
12.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
12.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
12.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
12.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
12.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
12.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
12.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
12.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
12.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
12.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
12.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
11.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
11.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
11.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
11.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
11.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
11.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
11.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
11.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
11.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
11.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
11.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
11.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
10.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
10.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
10.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
10.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
10.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
10.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
10.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
10.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
10.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
9.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
9.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
9.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
9.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
9.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
9.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
9.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
8.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
8.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
8.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
8.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
8.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
8.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
7.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
7.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
6.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
6.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
6.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
6.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
5.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
5.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
312
Normal
2.0
331
Tumor
1.8
277
Tumor
1.8
311
Tumor
1.6
297
Tumor
1.4
278
Normal
1.3
672
Normal
1.0
314
Normal
1.0
391
Tumor
1.0
332
Normal
0.9
567
Tumor
0.9
671
Tumor
0.9
357
Tumor
0.6
824
Normal
0.6
785
Tumor
0.6
965
Tumor
0.6
713
Tumor
0.6
481
Tumor
0.6
666
Normal
0.5
313
Tumor
0.5
192
Normal
0.5
877
Tumor
0.5
627
Tumor
0.5
465
Tumor
0.5
662
Normal
0.5
487
Tumor
0.4
786
Normal
0.4
217
Tumor
0.4
452
Normal
0.4
953
Tumor
0.4
778
Normal
0.4
867
Tumor
0.4
466
Normal
0.4
298
Normal
0.4
818
Normal
0.4
917
Tumor
0.4
385
Tumor
0.4
664
Normal
0.4
951
Tumor
0.4
815
Tumor
0.3
648
Normal
0.3
963
Tumor
0.3
271
Tumor
0.3
738
Normal
0.3
478
Normal
0.3
728
Normal
0.3
451
Tumor
0.3
723
Tumor
0.3
514
Normal
0.3
413
Tumor
0.3
857
Tumor
0.3
966
Normal
0.3
328
Normal
0.3
526
Normal
0.3
361
Tumor
0.3
472
Normal
0.3
724
Normal
0.3
387
Tumor
0.3
364
Normal
0.3
642
Normal
0.3
365
Tumor
0.3
268
Normal
0.3
924
Normal
0.3
975
Tumor
0.3
126
Normal
0.3
456
Normal
0.3
436
Normal
0.3
363
Tumor
0.3
777
Tumor
0.3
227
Tumor
0.2
464
Normal
0.2
981
Tumor
0.2
636
Normal
0.2
967
Tumor
0.2
435
Tumor
0.2
938
Normal
0.2
1022
Normal
0.2
425
Tumor
0.2
111
Normal
0.2
462
Normal
0.2
698
Normal
0.2
722
Normal
0.2
477
Tumor
0.2
884
Normal
0.2
262
Normal
0.2
483
Tumor
0.2
665
Tumor
0.2
124
Normal
0.2
468
Normal
0.2
923
Tumor
0.2
434
Normal
0.2
218
Normal
0.2
128
Normal
0.2
573
Tumor
0.2
868
Normal
0.2
196
Normal
0.2
816
Normal
0.2
1045
Tumor
0.2
537
Tumor
0.2
756
Normal
0.2
482
Normal
0.1
746
Normal
0.1
211
Tumor
0.1
741
Tumor
0.1
224
Normal
0.1
222
Normal
0.1
443
Tumor
0.1
716
Normal
0.1
286
Normal
0.1
432
Normal
0.1
366
Normal
0.1
467
Tumor
0.1
926
Normal
0.1
851
Tumor
0.1
1041
Tumor
0.1
228
Normal
0.1
497
Tumor
0.1
488
Normal
0.1
721
Tumor
0.1
538
Normal
0.1
212
Normal
0.1
1031
Tumor
0.1
376
Normal
0.1
852
Normal
0.1
535
Tumor
0.1
498
Normal
0.1
513
Tumor
0.1
444
Normal
0.1
912
Normal
0.1
214
Normal
0.1
982
Normal
0.1
114
Normal
0.1
916
Normal
0.1
327
Tumor
0.1
915
Tumor
0.1
494
Normal
0.1
448
Normal
0.1
1032
Normal
0.1
957
Tumor
0.1
191
Tumor
0.1
964
Normal
0.1
858
Normal
0.1
955
Tumor
0.1
617
Tumor
0.1
742
Normal
0.1
411
Tumor
0.1
641
Tumor
0.1
396
Normal
0.1
416
Normal
0.0
1015
Tumor
0.0
881
Tumor
0.0
446
Normal
0.0
213
Tumor
0.0
554
Normal
0.0
866
Normal
0.0
737
Tumor
0.0
922
Normal
0.0
925
Tumor
0.0
341
Tumor
0.0
534
Normal
0.0
362
Normal
0.0
125
Tumor
0.0
258
Normal
0.0
257
Tumor
0.0
433
Tumor
0.0
474
Normal
0.0
388
Normal
0.0
423
Tumor
0.0
873
Tumor
0.0
375
Tumor
0.0
647
Tumor
0.0
862
Normal
0.0
447
Tumor
0.0
1028
Normal
0.0
284
Normal
0.0
536
Normal
0.0
954
Normal
0.0
492
Normal
0.0
1043
Tumor
0.0
351
Tumor
0.0
431
Tumor
0.0
546
Normal
0.0
863
Tumor
0.0
744
Normal
0.0
574
Normal
0.0
127
Tumor
0.0
635
Tumor
0.0
745
Tumor
0.0
983
Tumor
0.0
1042
Normal
0.0
564
Normal
0.0
484
Normal
0.0
427
Tumor
0.0
976
Normal
0.0
524
Normal
0.0
528
Normal
0.0
267
Tumor
0.0
568
Normal
0.0
392
Normal
0.0
943
Tumor
0.0
358
Normal
0.0
232
Normal
0.0
1014
Normal
0.0
272
Normal
0.0
913
Tumor
0.0
412
Normal
0.0
911
Tumor
-0.1
944
Normal
-0.1
914
Normal
-0.1
814
Normal
-0.1
356
Normal
-0.1
977
Tumor
-0.1
956
Normal
-0.1
1026
Normal
-0.1
918
Normal
-0.1
661
Tumor
-0.1
563
Tumor
-0.1
426
Normal
-0.1
958
Normal
-0.1
968
Normal
-0.1
491
Tumor
-0.1
517
Tumor
-0.1
445
Tumor
-0.1
414
Normal
-0.1
874
Normal
-0.1
823
Tumor
-0.1
353
Tumor
-0.1
367
Tumor
-0.1
283
Tumor
-0.1
714
Normal
-0.1
415
Tumor
-0.1
618
Normal
-0.1
343
Tumor
-0.1
386
Normal
-0.1
493
Tumor
-0.1
686
Normal
-0.1
882
Normal
-0.1
697
Tumor
-0.1
817
Tumor
-0.1
394
Normal
-0.1
1046
Normal
-0.1
428
Normal
-0.1
615
Tumor
-0.1
572
Normal
-0.2
424
Normal
-0.2
527
Tumor
-0.2
516
Normal
-0.2
1044
Normal
-0.2
558
Normal
-0.2
195
Tumor
-0.2
422
Normal
-0.2
921
Tumor
-0.2
864
Normal
-0.2
978
Normal
-0.2
368
Normal
-0.2
984
Normal
-0.2
463
Tumor
-0.2
663
Tumor
-0.2
937
Tumor
-0.2
123
Tumor
-0.2
878
Normal
-0.2
352
Normal
-0.2
221
Tumor
-0.2
1016
Normal
-0.2
616
Normal
-0.3
523
Tumor
-0.3
557
Tumor
-0.3
553
Tumor
-0.3
695
Tumor
-0.3
571
Tumor
-0.3
813
Tumor
-0.3
354
Normal
-0.3
952
Normal
-0.3
1013
Tumor
-0.3
342
Normal
-0.3
395
Tumor
-0.3
471
Tumor
-0.3
344
Normal
-0.3
383
Tumor
-0.3
113
Tumor
-0.3
112
Tumor
-0.3
355
Tumor
-0.3
461
Tumor
-0.3
384
Normal
-0.3
223
Tumor
-0.3
883
Tumor
-0.3
525
Tumor
-0.3
231
Tumor
-0.4
861
Tumor
-0.4
533
Tumor
-0.4
715
Tumor
-0.4
696
Normal
-0.4
518
Normal
-0.4
685
Tumor
-0.4
261
Tumor
-0.4
743
Tumor
-0.4
393
Tumor
-0.5
727
Tumor
-0.5
755
Tumor
-0.5
1025
Tumor
-0.5
545
Tumor
-0.5
1027
Tumor
-0.5
628
Normal
-0.5
455
Tumor
-0.5
1021
Tumor
-0.5
421
Tumor
-0.5
865
Tumor
-0.6
515
Tumor
-0.6
285
Tumor
-0.8
473
Tumor
-1.1
131
Tumor
N/A
132
Normal
N/A
135
Tumor
N/A
136
Normal
N/A
137
Tumor
N/A
138
Normal
N/A
141
Tumor
N/A
142
Normal
N/A
145
Tumor
N/A
146
Normal
N/A
147
Tumor
N/A
148
Normal
N/A
161
Tumor
N/A
162
Normal
N/A
171
Tumor
N/A
172
Normal
N/A
185
Tumor
N/A
186
Normal
N/A
187
Tumor
N/A
188
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
