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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
WASF2 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
42.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
36.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
35.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
35.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
34.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
31.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
31.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
30.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
29.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
27.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
27.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
27.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
27.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
27.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
26.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
26.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
25.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
25.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
25.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
24.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
24.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
24.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
24.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
24.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
23.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
23.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
22.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
22.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
22.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
21.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
21.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
21.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
21.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
20.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
20.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
20.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
19.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
19.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
19.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
19.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
19.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
19.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
19.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
19.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
18.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
18.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
18.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
18.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
18.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
18.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
17.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
17.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
17.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
17.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
17.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
17.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
17.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
17.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
16.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
16.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
16.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
16.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
16.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
16.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
16.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
16.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
16.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
16.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
16.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
16.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
16.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
16.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
16.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
16.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
16.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
15.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
15.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
15.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
15.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
15.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
15.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
14.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
14.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
14.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
14.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
14.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
14.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
14.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
14.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
14.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
14.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
14.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
14.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
14.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
14.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
14.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
13.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
13.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
13.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
13.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
13.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
13.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
13.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
13.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
13.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
13.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
13.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
13.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
13.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
13.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
13.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
13.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
13.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
13.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
12.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
12.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
12.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
12.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
12.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
12.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
12.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
12.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
12.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
12.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
12.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
12.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
11.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
11.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
11.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
11.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
11.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
11.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
11.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
11.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
11.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
11.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
11.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
11.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
11.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
11.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
11.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
11.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
11.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
11.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
11.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
11.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
11.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
11.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
11.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
11.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
11.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
11.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
11.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
11.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
11.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
11.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
11.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
11.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
11.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
10.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
10.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
10.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
10.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
10.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
10.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
10.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
10.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
10.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
10.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
10.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
10.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
10.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
10.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
10.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
10.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
10.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
10.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
10.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
9.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
9.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
9.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
9.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
9.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
9.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
9.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
9.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
9.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
9.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
9.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
9.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
9.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
9.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
9.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
9.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
9.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
9.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
9.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
9.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
9.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
9.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
9.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
9.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
8.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
8.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
8.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
8.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
8.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
8.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
8.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
8.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
8.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
8.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
8.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
8.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
8.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
8.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
8.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
8.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
8.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
8.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
8.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
8.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
8.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
8.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
8.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
8.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
7.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
7.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
7.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
7.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
7.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
7.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
7.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
7.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
7.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
7.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
7.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
7.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
7.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
7.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
7.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
7.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
7.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
7.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
7.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
7.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
7.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
7.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
7.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
7.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
7.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
7.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
7.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
7.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
6.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
6.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
6.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
6.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
6.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
6.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
6.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
6.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
6.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
6.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
6.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
6.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
6.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
6.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
6.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
6.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
6.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
6.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
5.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
5.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
5.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
5.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
5.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
5.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
5.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
5.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
5.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
5.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
5.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
5.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
5.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
5.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
5.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
5.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
5.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
5.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
5.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
4.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
4.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
4.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
4.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
4.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
4.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
4.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
4.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
4.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
4.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
4.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
4.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
4.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
4.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
4.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
4.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
3.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
3.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
3.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
3.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
3.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
3.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
3.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
2.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
WASF2 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.0
Number of samples
231
Samples
Sample
Description
TPM
DO45209
0 years, male, NA, stage:4, alive, 1350 days
42.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
40.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
40.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
33.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
32.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
32.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
30.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
29.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
29.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
28.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
28.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
26.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
26.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
26.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
26.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
24.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
24.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
24.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
24.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
24.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
22.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
22.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
22.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
22.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
21.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
21.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
21.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
21.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
21.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
20.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
20.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
19.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
19.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
18.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
18.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
18.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
18.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
18.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
18.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
18.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
18.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
17.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
17.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
17.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
16.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
16.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
16.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
16.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
15.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
15.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
15.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
14.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
14.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
14.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
14.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
14.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
14.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
14.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
14.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
14.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
14.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
14.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
14.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
14.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
13.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
13.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
13.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
13.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
13.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
13.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
13.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
13.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
13.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
13.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
12.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
12.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
12.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
12.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
12.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
12.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
12.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
12.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
12.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
12.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
12.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
12.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
12.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
11.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
11.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
11.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
11.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
11.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
11.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
11.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
11.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
11.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
11.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
11.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
11.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
11.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
11.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
11.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
11.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
11.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
11.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
10.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
10.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
10.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
10.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
10.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
10.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
10.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
10.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
10.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
10.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
10.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
10.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
10.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
10.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
10.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
10.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
10.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
9.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
9.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
9.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
9.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
9.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
9.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
9.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
9.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
9.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
9.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
9.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
9.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
9.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
9.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
9.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
9.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
9.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
9.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
9.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
9.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
8.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
8.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
8.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
8.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
8.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
8.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
8.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
8.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
8.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
8.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
8.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
8.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
8.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
8.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
7.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
7.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
7.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
7.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
7.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
7.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
7.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
7.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
7.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
7.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
7.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
7.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
7.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
7.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
7.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
7.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
7.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
7.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
7.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
7.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
7.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
7.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
6.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
6.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
6.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
6.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
6.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
6.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
6.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
6.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
6.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
6.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
6.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
6.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
5.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
5.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
5.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
5.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
5.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
5.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
5.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
5.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
5.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
5.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
5.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
5.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
4.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
4.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
4.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
4.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
4.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
4.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
4.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
4.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
4.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
4.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
4.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
4.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
4.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
3.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
3.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
3.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
3.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
3.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
3.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
3.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
3.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
3.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
2.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
2.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
2.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
1.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
724
Normal
0.7
661
Tumor
0.6
498
Normal
0.4
685
Tumor
0.4
917
Tumor
0.4
311
Tumor
0.4
211
Tumor
0.4
814
Normal
0.4
434
Normal
0.4
727
Tumor
0.4
492
Normal
0.4
478
Normal
0.4
161
Tumor
0.4
171
Tumor
0.4
483
Tumor
0.4
467
Tumor
0.3
536
Normal
0.3
141
Tumor
0.3
538
Normal
0.3
455
Tumor
0.3
524
Normal
0.3
916
Normal
0.3
463
Tumor
0.3
525
Tumor
0.3
477
Tumor
0.3
1013
Tumor
0.3
415
Tumor
0.3
516
Normal
0.3
977
Tumor
0.3
851
Tumor
0.3
966
Normal
0.3
563
Tumor
0.3
1031
Tumor
0.3
471
Tumor
0.3
383
Tumor
0.3
921
Tumor
0.2
861
Tumor
0.2
461
Tumor
0.2
913
Tumor
0.2
224
Normal
0.2
217
Tumor
0.2
528
Normal
0.2
925
Tumor
0.2
881
Tumor
0.2
716
Normal
0.2
852
Normal
0.2
951
Tumor
0.2
857
Tumor
0.2
493
Tumor
0.2
192
Normal
0.2
1015
Tumor
0.2
574
Normal
0.2
978
Normal
0.2
535
Tumor
0.2
425
Tumor
0.2
395
Tumor
0.2
883
Tumor
0.2
573
Tumor
0.2
617
Tumor
0.2
195
Tumor
0.2
567
Tumor
0.2
213
Tumor
0.2
212
Normal
0.2
444
Normal
0.2
952
Normal
0.2
823
Tumor
0.2
1021
Tumor
0.2
268
Normal
0.2
384
Normal
0.2
537
Tumor
0.2
447
Tumor
0.2
343
Tumor
0.2
558
Normal
0.2
984
Normal
0.2
533
Tumor
0.2
185
Tumor
0.2
481
Tumor
0.2
697
Tumor
0.2
672
Normal
0.2
112
Tumor
0.1
686
Normal
0.1
451
Tumor
0.1
926
Normal
0.1
721
Tumor
0.1
968
Normal
0.1
375
Tumor
0.1
744
Normal
0.1
456
Normal
0.1
778
Normal
0.1
421
Tumor
0.1
918
Normal
0.1
271
Tumor
0.1
1026
Normal
0.1
283
Tumor
0.1
491
Tumor
0.1
262
Normal
0.1
284
Normal
0.1
813
Tumor
0.1
911
Tumor
0.1
975
Tumor
0.1
413
Tumor
0.1
474
Normal
0.1
914
Normal
0.1
1044
Normal
0.1
327
Tumor
0.1
741
Tumor
0.1
816
Normal
0.1
956
Normal
0.1
817
Tumor
0.1
713
Tumor
0.1
963
Tumor
0.1
124
Normal
0.1
344
Normal
0.1
976
Normal
0.1
863
Tumor
0.1
352
Normal
0.1
1028
Normal
0.1
954
Normal
0.1
126
Normal
0.1
468
Normal
0.1
433
Tumor
0.1
188
Normal
0.1
497
Tumor
0.1
515
Tumor
0.1
922
Normal
0.1
641
Tumor
0.1
427
Tumor
0.1
341
Tumor
0.1
696
Normal
0.1
385
Tumor
0.1
443
Tumor
0.1
367
Tumor
0.1
424
Normal
0.1
743
Tumor
0.1
494
Normal
0.1
218
Normal
0.1
297
Tumor
0.1
698
Normal
0.1
135
Tumor
0.1
878
Normal
0.1
728
Normal
0.1
146
Normal
0.1
924
Normal
0.1
865
Tumor
0.1
955
Tumor
0.1
554
Normal
0.0
715
Tumor
0.0
231
Tumor
0.0
818
Normal
0.0
1041
Tumor
0.0
662
Normal
0.0
223
Tumor
0.0
362
Normal
0.0
557
Tumor
0.0
868
Normal
0.0
737
Tumor
0.0
738
Normal
0.0
1025
Tumor
0.0
964
Normal
0.0
943
Tumor
0.0
221
Tumor
0.0
824
Normal
0.0
365
Tumor
0.0
1016
Normal
0.0
513
Tumor
0.0
983
Tumor
0.0
472
Normal
0.0
482
Normal
0.0
572
Normal
0.0
937
Tumor
0.0
944
Normal
0.0
488
Normal
0.0
958
Normal
0.0
147
Tumor
0.0
412
Normal
0.0
884
Normal
0.0
1032
Normal
0.0
714
Normal
0.0
628
Normal
0.0
1045
Tumor
0.0
1014
Normal
0.0
647
Tumor
0.0
518
Normal
0.0
873
Tumor
0.0
142
Normal
0.0
874
Normal
0.0
353
Tumor
0.0
387
Tumor
0.0
1042
Normal
0.0
355
Tumor
0.0
312
Normal
0.0
111
Normal
0.0
866
Normal
0.0
777
Tumor
0.0
953
Tumor
0.0
755
Tumor
0.0
114
Normal
0.0
487
Tumor
0.0
527
Tumor
0.0
286
Normal
0.0
386
Normal
0.0
915
Tumor
0.0
858
Normal
0.0
448
Normal
0.0
786
Normal
0.0
665
Tumor
0.0
138
Normal
0.0
695
Tumor
0.0
484
Normal
0.0
261
Tumor
0.0
882
Normal
0.0
923
Tumor
0.0
396
Normal
0.0
571
Tumor
0.0
568
Normal
0.0
391
Tumor
0.0
867
Tumor
0.0
912
Normal
0.0
546
Normal
0.0
357
Tumor
0.0
125
Tumor
0.0
545
Tumor
0.0
257
Tumor
0.0
376
Normal
-0.1
514
Normal
-0.1
723
Tumor
-0.1
431
Tumor
-0.1
648
Normal
-0.1
445
Tumor
-0.1
423
Tumor
-0.1
272
Normal
-0.1
366
Normal
-0.1
756
Normal
-0.1
473
Tumor
-0.1
1022
Normal
-0.1
368
Normal
-0.1
722
Normal
-0.1
466
Normal
-0.1
416
Normal
-0.1
663
Tumor
-0.1
642
Normal
-0.1
534
Normal
-0.1
627
Tumor
-0.1
131
Tumor
-0.1
414
Normal
-0.1
422
Normal
-0.1
938
Normal
-0.1
742
Normal
-0.1
815
Tumor
-0.1
517
Tumor
-0.1
137
Tumor
-0.1
356
Normal
-0.1
342
Normal
-0.1
671
Tumor
-0.1
664
Normal
-0.1
982
Normal
-0.1
228
Normal
-0.1
862
Normal
-0.1
435
Tumor
-0.1
864
Normal
-0.1
526
Normal
-0.1
464
Normal
-0.1
1043
Tumor
-0.1
364
Normal
-0.1
392
Normal
-0.1
432
Normal
-0.1
354
Normal
-0.1
145
Tumor
-0.1
553
Tumor
-0.1
965
Tumor
-0.1
214
Normal
-0.1
267
Tumor
-0.1
616
Normal
-0.1
785
Tumor
-0.1
358
Normal
-0.1
426
Normal
-0.1
136
Normal
-0.1
981
Tumor
-0.1
428
Normal
-0.1
967
Tumor
-0.1
363
Tumor
-0.1
465
Tumor
-0.2
746
Normal
-0.2
298
Normal
-0.2
636
Normal
-0.2
462
Normal
-0.2
452
Normal
-0.2
564
Normal
-0.2
128
Normal
-0.2
113
Tumor
-0.2
666
Normal
-0.2
222
Normal
-0.2
1046
Normal
-0.2
446
Normal
-0.2
187
Tumor
-0.2
191
Tumor
-0.2
436
Normal
-0.2
328
Normal
-0.2
196
Normal
-0.2
313
Tumor
-0.2
148
Normal
-0.2
285
Tumor
-0.2
331
Tumor
-0.2
258
Normal
-0.2
232
Normal
-0.2
635
Tumor
-0.2
394
Normal
-0.3
388
Normal
-0.3
172
Normal
-0.3
1027
Tumor
-0.3
162
Normal
-0.3
618
Normal
-0.3
877
Tumor
-0.3
361
Tumor
-0.3
351
Tumor
-0.3
132
Normal
-0.3
277
Tumor
-0.3
186
Normal
-0.3
127
Tumor
-0.3
227
Tumor
-0.3
957
Tumor
-0.4
278
Normal
-0.4
615
Tumor
-0.4
411
Tumor
-0.4
523
Tumor
-0.5
332
Normal
-0.5
123
Tumor
-0.5
314
Normal
-0.5
393
Tumor
-0.6
745
Tumor
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
