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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SLC38A10 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
53.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
245.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
224.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
169.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
151.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
150.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
149.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
148.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
140.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
131.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
120.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
119.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
119.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
113.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
113.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
113.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
111.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
111.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
111.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
109.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
107.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
105.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
103.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
102.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
101.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
101.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
100.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
99.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
97.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
96.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
96.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
93.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
92.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
92.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
91.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
91.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
90.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
90.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
89.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
88.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
87.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
87.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
87.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
86.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
86.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
86.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
85.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
85.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
84.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
84.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
84.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
83.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
81.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
81.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
80.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
80.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
79.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
78.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
78.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
77.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
77.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
77.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
77.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
76.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
75.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
75.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
75.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
75.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
74.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
74.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
74.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
74.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
74.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
73.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
73.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
73.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
73.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
72.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
72.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
72.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
71.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
71.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
71.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
71.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
71.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
70.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
70.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
70.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
69.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
69.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
69.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
69.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
68.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
68.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
68.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
68.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
67.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
67.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
67.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
67.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
66.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
66.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
66.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
66.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
66.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
65.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
65.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
64.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
64.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
64.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
63.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
63.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
63.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
62.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
62.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
62.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
62.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
61.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
61.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
61.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
61.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
60.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
60.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
60.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
59.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
59.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
59.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
59.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
58.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
58.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
58.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
58.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
58.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
57.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
57.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
57.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
57.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
57.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
57.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
56.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
56.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
55.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
55.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
55.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
54.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
54.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
54.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
54.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
54.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
54.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
53.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
53.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
53.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
53.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
53.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
52.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
52.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
52.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
52.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
52.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
52.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
52.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
52.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
51.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
51.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
51.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
51.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
51.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
51.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
50.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
50.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
50.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
50.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
50.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
49.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
49.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
49.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
49.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
49.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
48.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
48.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
48.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
48.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
48.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
48.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
48.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
47.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
47.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
47.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
47.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
47.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
46.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
46.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
46.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
46.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
46.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
46.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
45.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
45.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
45.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
45.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
45.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
45.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
45.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
45.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
45.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
45.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
45.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
44.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
44.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
44.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
44.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
44.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
44.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
44.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
43.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
43.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
43.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
42.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
42.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
42.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
42.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
42.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
41.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
41.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
41.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
41.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
41.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
41.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
40.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
40.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
40.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
40.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
40.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
40.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
39.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
39.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
39.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
39.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
39.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
38.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
38.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
38.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
38.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
38.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
37.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
37.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
37.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
37.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
37.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
37.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
37.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
36.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
36.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
36.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
35.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
35.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
35.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
35.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
35.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
35.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
34.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
34.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
34.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
34.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
34.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
34.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
33.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
33.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
33.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
33.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
33.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
33.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
32.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
32.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
32.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
32.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
32.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
32.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
32.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
32.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
32.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
32.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
31.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
30.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
30.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
30.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
30.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
29.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
29.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
29.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
29.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
29.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
29.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
29.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
29.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
28.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
28.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
28.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
27.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
27.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
27.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
27.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
27.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
27.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
27.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
26.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
26.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
26.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
26.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
26.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
25.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
25.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
25.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
25.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
25.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
24.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
23.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
23.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
23.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
23.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
23.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
23.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
22.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
22.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
22.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
21.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
21.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
21.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
20.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
20.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
20.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
20.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
20.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
19.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
19.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
18.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
17.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
16.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
16.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
14.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
14.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
14.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
13.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
13.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
13.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
11.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
11.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
10.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
10.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
10.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
9.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
8.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
6.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
5.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
5.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
5.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
4.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
4.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SLC38A10 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
41.4
Number of samples
231
Samples
Sample
Description
TPM
DO23532
0 years, female, NA, stage:1, alive, 960 days
128.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
100.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
96.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
93.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
92.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
87.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
86.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
85.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
85.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
84.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
82.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
81.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
80.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
74.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
71.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
70.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
68.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
67.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
65.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
64.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
63.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
63.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
63.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
62.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
62.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
62.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
62.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
61.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
61.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
60.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
60.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
58.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
58.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
58.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
58.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
57.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
57.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
57.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
56.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
56.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
55.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
55.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
55.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
55.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
55.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
55.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
53.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
53.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
53.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
53.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
53.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
52.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
52.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
52.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
52.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
52.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
52.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
51.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
50.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
50.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
49.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
49.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
49.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
48.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
48.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
48.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
48.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
48.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
47.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
47.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
47.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
47.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
47.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
46.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
45.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
45.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
45.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
45.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
44.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
44.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
44.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
44.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
43.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
43.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
43.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
43.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
43.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
43.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
43.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
43.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
42.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
42.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
42.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
42.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
42.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
42.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
41.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
41.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
41.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
41.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
41.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
41.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
40.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
40.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
39.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
39.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
39.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
39.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
38.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
38.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
38.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
37.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
37.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
37.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
37.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
37.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
37.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
37.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
37.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
37.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
36.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
36.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
36.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
36.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
36.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
36.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
36.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
35.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
35.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
35.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
35.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
34.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
34.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
34.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
34.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
34.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
33.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
33.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
33.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
33.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
33.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
33.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
32.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
32.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
32.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
32.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
32.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
31.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
31.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
31.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
31.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
31.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
31.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
31.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
31.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
30.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
30.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
30.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
30.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
30.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
30.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
29.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
29.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
29.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
29.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
29.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
29.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
29.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
29.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
29.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
29.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
29.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
28.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
28.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
28.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
28.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
28.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
28.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
28.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
27.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
27.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
27.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
26.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
26.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
26.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
26.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
26.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
26.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
26.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
26.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
25.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
25.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
25.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
25.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
25.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
25.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
25.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
25.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
25.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
24.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
24.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
24.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
24.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
23.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
23.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
23.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
23.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
22.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
22.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
22.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
22.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
22.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
21.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
21.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
21.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
21.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
20.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
20.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
19.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
19.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
19.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
19.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
18.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
18.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
17.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
17.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
15.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
15.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
15.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
14.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
10.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
533
Tumor
2.0
957
Tumor
1.4
523
Tumor
1.4
393
Tumor
1.3
647
Tumor
1.2
863
Tumor
1.1
777
Tumor
1.1
141
Tumor
1.1
965
Tumor
1.1
123
Tumor
1.0
953
Tumor
1.0
923
Tumor
1.0
355
Tumor
1.0
487
Tumor
0.9
435
Tumor
0.9
741
Tumor
0.8
357
Tumor
0.8
515
Tumor
0.8
755
Tumor
0.8
937
Tumor
0.7
473
Tumor
0.7
423
Tumor
0.7
257
Tumor
0.7
171
Tumor
0.7
1015
Tumor
0.7
445
Tumor
0.6
1027
Tumor
0.6
527
Tumor
0.6
1021
Tumor
0.6
431
Tumor
0.6
951
Tumor
0.6
977
Tumor
0.6
161
Tumor
0.6
481
Tumor
0.5
433
Tumor
0.5
695
Tumor
0.5
231
Tumor
0.5
817
Tumor
0.4
911
Tumor
0.4
353
Tumor
0.4
823
Tumor
0.4
745
Tumor
0.4
1013
Tumor
0.4
361
Tumor
0.4
497
Tumor
0.4
341
Tumor
0.4
727
Tumor
0.4
471
Tumor
0.4
665
Tumor
0.4
571
Tumor
0.4
223
Tumor
0.4
525
Tumor
0.4
737
Tumor
0.4
112
Tumor
0.4
137
Tumor
0.4
443
Tumor
0.3
213
Tumor
0.3
1025
Tumor
0.3
1045
Tumor
0.3
743
Tumor
0.3
343
Tumor
0.3
271
Tumor
0.3
327
Tumor
0.3
615
Tumor
0.3
227
Tumor
0.3
517
Tumor
0.3
465
Tumor
0.3
913
Tumor
0.2
915
Tumor
0.2
785
Tumor
0.2
518
Normal
0.2
461
Tumor
0.2
187
Tumor
0.2
721
Tumor
0.2
147
Tumor
0.2
545
Tumor
0.2
411
Tumor
0.2
477
Tumor
0.2
663
Tumor
0.2
724
Normal
0.1
1043
Tumor
0.1
756
Normal
0.1
713
Tumor
0.1
963
Tumor
0.1
715
Tumor
0.1
415
Tumor
0.1
666
Normal
0.1
824
Normal
0.1
1014
Normal
0.1
513
Tumor
0.1
857
Tumor
0.1
358
Normal
0.1
125
Tumor
0.1
436
Normal
0.1
964
Normal
0.1
383
Tumor
0.1
567
Tumor
0.1
286
Normal
0.1
526
Normal
0.1
447
Tumor
0.1
958
Normal
0.1
131
Tumor
0.1
142
Normal
0.1
742
Normal
0.0
922
Normal
0.0
814
Normal
0.0
938
Normal
0.0
546
Normal
0.0
162
Normal
0.0
858
Normal
0.0
926
Normal
0.0
413
Tumor
0.0
375
Tumor
0.0
1046
Normal
0.0
494
Normal
0.0
1016
Normal
0.0
462
Normal
0.0
514
Normal
N/A
356
Normal
0.0
328
Normal
0.0
412
Normal
0.0
648
Normal
0.0
195
Tumor
0.0
685
Tumor
0.0
376
Normal
0.0
482
Normal
0.0
483
Tumor
0.0
111
Normal
0.0
313
Tumor
0.0
563
Tumor
0.0
813
Tumor
0.0
463
Tumor
0.0
277
Tumor
0.0
672
Normal
0.0
534
Normal
0.0
912
Normal
0.0
351
Tumor
0.0
394
Normal
0.0
297
Tumor
0.0
873
Tumor
-0.1
983
Tumor
-0.1
364
Normal
-0.1
446
Normal
-0.1
387
Tumor
-0.1
978
Normal
-0.1
723
Tumor
-0.1
716
Normal
-0.1
222
Normal
-0.1
448
Normal
-0.1
221
Tumor
-0.1
1041
Tumor
-0.1
696
Normal
-0.1
211
Tumor
-0.1
714
Normal
-0.1
472
Normal
-0.1
185
Tumor
-0.1
425
Tumor
-0.1
925
Tumor
-0.1
868
Normal
-0.1
464
Normal
-0.1
478
Normal
-0.1
554
Normal
-0.1
191
Tumor
-0.1
314
Normal
-0.1
952
Normal
-0.1
488
Normal
-0.1
283
Tumor
-0.1
342
Normal
-0.1
628
Normal
-0.1
686
Normal
-0.1
228
Normal
-0.1
627
Tumor
-0.1
432
Normal
-0.1
352
Normal
-0.1
882
Normal
-0.1
368
Normal
-0.1
553
Tumor
-0.1
746
Normal
-0.1
778
Normal
-0.1
738
Normal
-0.1
976
Normal
-0.1
572
Normal
-0.1
864
Normal
-0.1
451
Tumor
-0.1
285
Tumor
-0.1
557
Tumor
-0.1
921
Tumor
-0.2
861
Tumor
-0.2
136
Normal
-0.2
728
Normal
-0.2
884
Normal
-0.2
818
Normal
-0.2
954
Normal
-0.2
516
Normal
-0.2
455
Tumor
-0.2
186
Normal
-0.2
568
Normal
-0.2
493
Tumor
-0.2
722
Normal
-0.2
365
Tumor
-0.2
878
Normal
-0.2
416
Normal
-0.2
881
Tumor
-0.2
528
Normal
-0.2
1032
Normal
-0.2
466
Normal
-0.2
385
Tumor
-0.2
196
Normal
-0.2
744
Normal
-0.2
982
Normal
-0.2
354
Normal
-0.2
396
Normal
-0.2
917
Tumor
-0.2
786
Normal
-0.2
414
Normal
-0.2
148
Normal
-0.2
877
Tumor
-0.2
172
Normal
-0.2
126
Normal
-0.2
924
Normal
-0.2
363
Tumor
-0.2
388
Normal
-0.2
573
Tumor
-0.2
332
Normal
-0.2
635
Tumor
-0.2
392
Normal
-0.2
524
Normal
-0.2
1026
Normal
-0.2
874
Normal
-0.2
564
Normal
-0.2
664
Normal
-0.2
574
Normal
-0.2
261
Tumor
-0.3
124
Normal
-0.3
867
Tumor
-0.3
852
Normal
-0.3
558
Normal
-0.3
344
Normal
-0.3
981
Tumor
-0.3
968
Normal
-0.3
484
Normal
-0.3
146
Normal
-0.3
284
Normal
-0.3
114
Normal
-0.3
918
Normal
-0.3
865
Tumor
-0.3
538
Normal
-0.3
278
Normal
-0.3
661
Tumor
-0.3
956
Normal
-0.3
662
Normal
-0.3
452
Normal
-0.3
132
Normal
-0.3
498
Normal
-0.3
944
Normal
-0.3
474
Normal
-0.3
618
Normal
-0.3
421
Tumor
-0.3
984
Normal
-0.3
212
Normal
-0.3
362
Normal
-0.3
866
Normal
-0.3
816
Normal
-0.3
395
Tumor
-0.3
424
Normal
-0.3
214
Normal
-0.3
1044
Normal
-0.3
1022
Normal
-0.3
128
Normal
-0.3
218
Normal
-0.4
232
Normal
-0.4
298
Normal
-0.4
862
Normal
-0.4
127
Tumor
-0.4
331
Tumor
-0.4
258
Normal
-0.4
428
Normal
-0.4
217
Tumor
-0.4
1031
Tumor
-0.4
427
Tumor
-0.4
456
Normal
-0.4
916
Normal
-0.4
671
Tumor
-0.4
192
Normal
-0.4
444
Normal
-0.4
642
Normal
-0.4
815
Tumor
-0.4
914
Normal
-0.4
536
Normal
-0.4
616
Normal
-0.4
851
Tumor
-0.4
138
Normal
-0.4
1042
Normal
-0.4
636
Normal
-0.4
384
Normal
-0.4
267
Tumor
-0.4
975
Tumor
-0.4
224
Normal
-0.4
262
Normal
-0.4
467
Tumor
-0.5
943
Tumor
-0.5
955
Tumor
-0.5
468
Normal
-0.5
641
Tumor
-0.5
426
Normal
-0.5
272
Normal
-0.5
386
Normal
-0.5
366
Normal
-0.5
145
Tumor
-0.5
492
Normal
-0.5
966
Normal
-0.5
491
Tumor
-0.5
312
Normal
-0.5
422
Normal
-0.5
268
Normal
-0.5
434
Normal
-0.5
537
Tumor
-0.6
311
Tumor
-0.6
113
Tumor
-0.6
391
Tumor
-0.6
188
Normal
-0.6
535
Tumor
-0.6
883
Tumor
-0.7
1028
Normal
-0.7
367
Tumor
-0.7
135
Tumor
-0.8
967
Tumor
-0.9
698
Normal
-1.0
617
Tumor
-1.2
697
Tumor
-1.7
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
