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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SLC35B2 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
39.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
155.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
153.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
133.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
118.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
118.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
113.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
108.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
100.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
99.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
99.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
98.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
97.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
97.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
96.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
93.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
93.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
92.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
91.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
85.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
85.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
84.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
82.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
82.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
80.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
79.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
77.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
76.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
76.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
73.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
73.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
72.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
71.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
71.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
70.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
69.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
69.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
68.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
68.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
68.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
67.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
67.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
65.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
65.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
65.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
65.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
64.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
64.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
63.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
63.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
62.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
62.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
61.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
61.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
60.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
60.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
59.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
59.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
58.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
58.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
57.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
57.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
56.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
55.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
55.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
55.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
55.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
55.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
54.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
54.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
54.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
54.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
54.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
53.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
52.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
52.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
52.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
52.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
52.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
51.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
51.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
51.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
50.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
50.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
50.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
50.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
49.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
49.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
49.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
49.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
49.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
49.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
49.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
49.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
49.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
48.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
48.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
48.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
47.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
47.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
47.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
47.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
47.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
46.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
46.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
46.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
46.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
46.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
46.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
46.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
45.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
45.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
44.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
44.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
44.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
44.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
44.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
44.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
44.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
43.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
43.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
43.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
42.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
42.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
42.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
41.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
41.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
41.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
41.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
41.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
41.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
41.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
41.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
40.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
40.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
40.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
40.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
40.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
40.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
39.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
39.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
39.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
39.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
39.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
38.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
38.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
37.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
36.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
36.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
36.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
36.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
36.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
36.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
36.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
36.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
35.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
35.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
35.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
35.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
34.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
34.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
34.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
34.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
34.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
33.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
33.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
33.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
33.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
33.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
33.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
33.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
33.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
33.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
33.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
33.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
33.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
33.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
33.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
32.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
32.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
32.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
32.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
32.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
32.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
31.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
31.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
31.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
31.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
31.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
31.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
31.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
31.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
31.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
31.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
31.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
31.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
31.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
31.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
31.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
30.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
30.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
30.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
30.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
30.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
30.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
30.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
29.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
29.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
29.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
29.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
29.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
29.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
29.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
29.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
29.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
29.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
28.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
28.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
28.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
28.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
28.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
28.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
28.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
28.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
28.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
28.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
27.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
27.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
27.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
27.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
27.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
27.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
27.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
27.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
27.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
27.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
27.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
26.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
26.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
26.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
26.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
26.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
26.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
26.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
26.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
26.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
26.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
26.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
26.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
26.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
26.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
25.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
25.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
25.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
24.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
24.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
24.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
24.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
24.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
24.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
24.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
24.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
24.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
23.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
23.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
23.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
23.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
23.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
23.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
23.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
23.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
23.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
23.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
23.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
23.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
23.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
23.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
23.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
22.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
22.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
22.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
22.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
22.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
22.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
22.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
22.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
22.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
22.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
22.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
22.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
21.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
21.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
21.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
21.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
21.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
21.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
21.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
21.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
20.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
20.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
20.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
20.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
20.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
20.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
19.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
19.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
19.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
19.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
18.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
18.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
18.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
18.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
18.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
18.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
18.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
18.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
17.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
17.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
17.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
17.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
17.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
17.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
17.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
17.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
17.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
16.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
16.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
16.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
16.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
16.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
16.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
15.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
15.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
15.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
15.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
15.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
15.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
14.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
14.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
14.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
14.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
14.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
14.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
13.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
13.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
13.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
13.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
13.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
13.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
13.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
13.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
13.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
13.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
13.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
12.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
12.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
11.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
11.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
10.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
9.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
9.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
8.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SLC35B2 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
29.0
Number of samples
231
Samples
Sample
Description
TPM
DO45185
0 years, male, NA, stage:2, alive, 600 days
187.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
103.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
89.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
73.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
71.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
69.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
67.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
65.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
63.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
63.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
61.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
60.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
58.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
58.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
57.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
54.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
53.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
52.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
52.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
51.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
51.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
51.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
50.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
50.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
49.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
49.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
48.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
48.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
48.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
48.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
47.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
47.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
47.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
47.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
46.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
46.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
45.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
45.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
45.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
44.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
43.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
43.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
43.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
43.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
43.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
42.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
40.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
39.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
39.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
39.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
39.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
38.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
38.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
38.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
38.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
37.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
36.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
36.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
36.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
36.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
35.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
34.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
34.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
33.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
33.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
32.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
32.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
31.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
31.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
31.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
30.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
30.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
30.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
30.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
30.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
30.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
30.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
30.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
30.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
29.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
29.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
29.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
29.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
29.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
29.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
28.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
28.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
28.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
28.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
28.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
28.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
27.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
27.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
27.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
27.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
26.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
26.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
26.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
26.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
26.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
26.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
26.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
25.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
25.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
25.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
25.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
25.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
25.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
24.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
24.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
24.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
24.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
24.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
24.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
24.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
24.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
23.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
23.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
23.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
23.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
23.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
23.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
22.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
22.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
22.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
22.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
22.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
21.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
21.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
21.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
21.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
21.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
21.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
21.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
21.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
21.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
21.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
20.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
20.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
20.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
20.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
20.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
20.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
20.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
19.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
19.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
19.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
19.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
19.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
19.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
19.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
19.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
19.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
19.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
19.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
19.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
19.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
19.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
19.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
18.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
18.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
18.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
18.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
18.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
18.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
18.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
18.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
18.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
18.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
18.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
18.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
17.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
17.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
17.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
17.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
17.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
17.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
17.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
17.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
16.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
16.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
16.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
16.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
16.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
16.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
15.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
15.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
15.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
15.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
15.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
15.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
15.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
15.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
15.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
14.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
14.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
14.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
14.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
14.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
14.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
14.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
13.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
13.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
13.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
13.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
13.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
13.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
13.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
13.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
12.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
12.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
12.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
12.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
12.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
12.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
11.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
11.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
11.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
11.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
11.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
10.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
10.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
10.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
8.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
8.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
8.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
8.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
7.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
6.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
535
Tumor
1.9
573
Tumor
1.7
351
Tumor
1.6
743
Tumor
1.6
1027
Tumor
1.5
343
Tumor
1.3
957
Tumor
1.3
923
Tumor
1.3
635
Tumor
1.3
257
Tumor
1.3
221
Tumor
1.1
385
Tumor
1.0
1041
Tumor
1.0
937
Tumor
0.9
261
Tumor
0.9
131
Tumor
0.9
755
Tumor
0.9
395
Tumor
0.9
1025
Tumor
0.9
463
Tumor
0.9
851
Tumor
0.9
467
Tumor
0.9
921
Tumor
0.9
285
Tumor
0.9
125
Tumor
0.8
815
Tumor
0.8
187
Tumor
0.8
913
Tumor
0.8
545
Tumor
0.8
553
Tumor
0.8
427
Tumor
0.8
557
Tumor
0.8
671
Tumor
0.8
497
Tumor
0.8
661
Tumor
0.8
491
Tumor
0.8
1013
Tumor
0.7
983
Tumor
0.7
665
Tumor
0.7
493
Tumor
0.7
213
Tumor
0.7
283
Tumor
0.7
391
Tumor
0.7
425
Tumor
0.7
313
Tumor
0.7
817
Tumor
0.7
387
Tumor
0.7
367
Tumor
0.7
877
Tumor
0.7
267
Tumor
0.7
447
Tumor
0.6
451
Tumor
0.6
911
Tumor
0.6
953
Tumor
0.6
567
Tumor
0.6
1021
Tumor
0.6
724
Normal
0.6
393
Tumor
0.6
411
Tumor
0.6
745
Tumor
0.6
277
Tumor
0.6
413
Tumor
0.6
951
Tumor
0.6
641
Tumor
0.6
375
Tumor
0.5
127
Tumor
0.5
433
Tumor
0.5
713
Tumor
0.5
271
Tumor
0.5
533
Tumor
0.5
473
Tumor
0.5
917
Tumor
0.5
685
Tumor
0.5
647
Tumor
0.5
471
Tumor
0.5
455
Tumor
0.5
697
Tumor
0.5
977
Tumor
0.5
1015
Tumor
0.4
715
Tumor
0.4
477
Tumor
0.4
361
Tumor
0.4
231
Tumor
0.4
445
Tumor
0.4
331
Tumor
0.4
881
Tumor
0.4
943
Tumor
0.4
195
Tumor
0.4
357
Tumor
0.4
865
Tumor
0.3
217
Tumor
0.3
525
Tumor
0.3
123
Tumor
0.3
517
Tumor
0.3
355
Tumor
0.3
113
Tumor
0.3
823
Tumor
0.3
147
Tumor
0.3
311
Tumor
0.3
431
Tumor
0.3
571
Tumor
0.3
965
Tumor
0.2
813
Tumor
0.2
443
Tumor
0.2
741
Tumor
0.2
663
Tumor
0.2
135
Tumor
0.2
814
Normal
0.2
1031
Tumor
0.2
925
Tumor
0.2
617
Tumor
0.2
523
Tumor
0.2
861
Tumor
0.2
967
Tumor
0.2
873
Tumor
0.2
141
Tumor
0.2
297
Tumor
0.1
461
Tumor
0.1
421
Tumor
0.1
327
Tumor
0.1
737
Tumor
0.1
537
Tumor
0.1
423
Tumor
0.1
145
Tumor
0.1
112
Tumor
0.1
223
Tumor
0.1
435
Tumor
0.1
191
Tumor
0.1
883
Tumor
0.1
536
Normal
0.1
227
Tumor
0.1
353
Tumor
0.1
278
Normal
0.1
513
Tumor
0.1
857
Tumor
0.0
615
Tumor
0.0
298
Normal
0.0
314
Normal
0.0
975
Tumor
0.0
211
Tumor
0.0
1043
Tumor
0.0
332
Normal
0.0
487
Tumor
0.0
963
Tumor
0.0
981
Tumor
0.0
434
Normal
0.0
785
Tumor
0.0
563
Tumor
-0.1
137
Tumor
-0.1
268
Normal
-0.1
341
Tumor
-0.1
642
Normal
-0.1
498
Normal
-0.1
1045
Tumor
-0.1
444
Normal
-0.1
465
Tumor
-0.1
214
Normal
-0.1
484
Normal
-0.1
452
Normal
-0.1
526
Normal
-0.1
312
Normal
-0.1
1028
Normal
-0.1
627
Tumor
-0.1
136
Normal
-0.2
982
Normal
-0.2
554
Normal
-0.2
852
Normal
-0.2
494
Normal
-0.2
138
Normal
-0.2
721
Tumor
-0.2
527
Tumor
-0.2
918
Normal
-0.2
396
Normal
-0.2
636
Normal
-0.2
352
Normal
-0.2
142
Normal
-0.2
524
Normal
-0.2
863
Tumor
-0.2
192
Normal
-0.2
414
Normal
-0.2
456
Normal
-0.2
516
Normal
-0.2
424
Normal
-0.2
218
Normal
-0.2
481
Tumor
-0.2
1016
Normal
-0.2
492
Normal
-0.2
368
Normal
-0.2
422
Normal
-0.2
161
Tumor
-0.2
448
Normal
-0.2
185
Tumor
-0.2
474
Normal
-0.2
618
Normal
-0.2
262
Normal
-0.2
284
Normal
-0.2
365
Tumor
-0.2
428
Normal
-0.2
228
Normal
-0.2
468
Normal
-0.3
698
Normal
-0.3
386
Normal
-0.3
362
Normal
-0.3
488
Normal
-0.3
538
Normal
-0.3
132
Normal
-0.3
466
Normal
-0.3
436
Normal
-0.3
874
Normal
-0.3
966
Normal
-0.3
478
Normal
-0.3
922
Normal
-0.3
232
Normal
-0.3
432
Normal
-0.3
916
Normal
-0.3
363
Tumor
-0.3
188
Normal
-0.3
628
Normal
-0.3
258
Normal
-0.3
662
Normal
-0.3
867
Tumor
-0.3
978
Normal
-0.3
344
Normal
-0.3
964
Normal
-0.3
464
Normal
-0.3
1046
Normal
-0.3
864
Normal
-0.3
976
Normal
-0.3
394
Normal
-0.3
224
Normal
-0.3
222
Normal
-0.3
616
Normal
-0.3
446
Normal
-0.3
358
Normal
-0.3
1014
Normal
-0.3
196
Normal
-0.3
146
Normal
-0.3
672
Normal
-0.3
124
Normal
-0.3
564
Normal
-0.3
744
Normal
-0.3
546
Normal
-0.4
866
Normal
-0.4
212
Normal
-0.4
915
Tumor
-0.4
126
Normal
-0.4
558
Normal
-0.4
426
Normal
-0.4
392
Normal
-0.4
388
Normal
-0.4
518
Normal
-0.4
111
Normal
-0.4
816
Normal
-0.4
514
Normal
-0.4
956
Normal
-0.4
1044
Normal
-0.4
926
Normal
-0.4
984
Normal
-0.4
1042
Normal
-0.4
738
Normal
-0.4
328
Normal
-0.4
534
Normal
-0.4
955
Tumor
-0.4
162
Normal
-0.4
868
Normal
-0.4
952
Normal
-0.4
664
Normal
-0.4
746
Normal
-0.4
128
Normal
-0.4
728
Normal
-0.4
1022
Normal
-0.4
528
Normal
-0.4
968
Normal
-0.4
286
Normal
-0.4
384
Normal
-0.4
483
Tumor
-0.4
824
Normal
-0.4
462
Normal
-0.4
416
Normal
-0.4
272
Normal
-0.4
172
Normal
-0.4
696
Normal
-0.5
714
Normal
-0.5
686
Normal
-0.5
366
Normal
-0.5
574
Normal
-0.5
1026
Normal
-0.5
415
Tumor
-0.5
778
Normal
-0.5
958
Normal
-0.5
1032
Normal
-0.5
148
Normal
-0.5
858
Normal
-0.5
364
Normal
-0.5
186
Normal
-0.5
171
Tumor
-0.5
354
Normal
-0.5
884
Normal
-0.5
376
Normal
-0.5
356
Normal
-0.5
572
Normal
-0.5
722
Normal
-0.5
786
Normal
-0.5
912
Normal
-0.5
412
Normal
-0.5
383
Tumor
-0.5
472
Normal
-0.5
954
Normal
-0.5
342
Normal
-0.5
666
Normal
-0.5
648
Normal
-0.6
914
Normal
-0.6
777
Tumor
-0.6
568
Normal
-0.6
878
Normal
-0.6
114
Normal
-0.6
727
Tumor
-0.6
742
Normal
-0.6
924
Normal
-0.6
862
Normal
-0.6
482
Normal
-0.6
938
Normal
-0.6
695
Tumor
-0.6
882
Normal
-0.6
944
Normal
-0.7
515
Tumor
-0.7
723
Tumor
-0.7
818
Normal
-0.7
756
Normal
-0.7
716
Normal
-1.0
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
