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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TSC22D3 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
53.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
553.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
302.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
297.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
289.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
289.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
271.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
258.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
236.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
229.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
225.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
221.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
220.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
217.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
210.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
208.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
207.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
206.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
197.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
187.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
179.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
177.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
172.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
171.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
166.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
163.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
162.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
161.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
160.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
157.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
151.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
149.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
145.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
144.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
142.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
139.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
138.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
134.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
134.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
132.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
126.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
122.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
116.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
114.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
113.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
111.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
109.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
109.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
107.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
106.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
106.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
104.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
103.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
103.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
101.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
100.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
100.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
98.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
95.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
94.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
94.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
93.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
92.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
90.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
89.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
89.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
89.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
88.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
87.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
87.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
82.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
81.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
80.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
78.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
78.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
77.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
77.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
76.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
75.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
75.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
73.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
73.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
70.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
69.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
68.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
67.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
67.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
65.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
65.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
64.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
64.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
63.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
61.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
61.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
61.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
61.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
60.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
60.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
58.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
58.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
58.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
58.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
57.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
57.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
56.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
56.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
56.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
55.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
55.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
54.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
54.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
54.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
53.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
52.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
52.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
50.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
48.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
48.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
48.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
48.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
48.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
48.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
48.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
48.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
47.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
47.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
47.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
46.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
45.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
45.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
45.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
45.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
45.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
44.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
44.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
43.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
43.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
42.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
42.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
41.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
41.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
40.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
40.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
40.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
40.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
40.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
39.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
38.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
38.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
38.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
38.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
37.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
37.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
37.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
37.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
37.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
37.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
36.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
36.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
36.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
35.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
35.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
35.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
35.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
35.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
34.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
34.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
33.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
33.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
33.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
33.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
32.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
32.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
32.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
32.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
32.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
31.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
31.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
31.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
31.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
31.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
31.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
30.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
30.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
30.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
29.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
29.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
29.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
29.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
29.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
29.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
29.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
29.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
28.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
28.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
28.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
28.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
27.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
27.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
27.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
27.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
27.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
27.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
27.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
26.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
26.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
26.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
26.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
25.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
25.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
25.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
25.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
25.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
25.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
25.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
25.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
25.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
24.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
24.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
24.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
24.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
24.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
24.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
24.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
24.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
23.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
23.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
23.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
22.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
22.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
22.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
22.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
22.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
21.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
21.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
21.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
21.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
21.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
21.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
21.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
20.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
20.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
20.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
20.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
20.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
20.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
20.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
20.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
20.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
20.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
20.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
19.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
19.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
19.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
19.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
19.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
19.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
19.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
19.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
19.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
18.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
18.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
18.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
18.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
18.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
17.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
17.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
17.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
17.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
17.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
17.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
17.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
17.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
16.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
16.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
16.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
16.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
16.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
16.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
16.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
16.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
16.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
15.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
15.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
15.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
15.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
14.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
14.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
14.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
13.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
13.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
13.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
13.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
13.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
13.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
12.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
12.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
12.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
12.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
12.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
12.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
11.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
11.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
11.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
11.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
11.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
11.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
11.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
11.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
11.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
11.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
10.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
10.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
10.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
10.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
10.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
9.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
9.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
9.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
9.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
9.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
9.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
9.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
8.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
8.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
8.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
8.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
8.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
7.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
7.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
7.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
7.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
7.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
7.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
7.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
7.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
6.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
6.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
6.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
6.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
6.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
6.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
5.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
5.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
5.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
5.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
4.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
4.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
4.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
4.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
4.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
4.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
3.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
3.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
2.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TSC22D3 is potential prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
49.4
Number of samples
231
Samples
Sample
Description
TPM
DO23523
0 years, male, NA, stage:3, alive, 1080 days
414.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
379.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
337.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
288.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
282.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
279.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
274.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
266.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
241.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
225.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
225.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
210.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
204.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
185.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
177.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
153.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
152.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
147.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
127.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
117.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
117.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
116.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
116.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
114.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
110.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
100.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
96.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
91.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
90.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
89.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
84.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
84.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
82.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
81.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
81.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
79.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
76.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
71.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
71.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
70.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
70.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
68.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
67.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
66.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
65.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
64.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
64.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
63.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
62.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
62.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
61.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
61.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
61.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
60.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
59.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
59.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
58.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
57.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
57.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
57.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
54.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
53.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
52.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
51.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
48.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
47.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
47.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
47.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
45.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
45.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
44.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
42.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
41.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
41.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
41.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
40.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
40.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
40.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
39.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
39.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
38.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
38.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
37.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
37.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
36.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
36.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
36.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
35.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
35.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
35.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
34.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
34.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
33.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
33.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
32.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
32.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
31.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
31.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
30.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
30.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
30.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
30.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
30.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
29.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
29.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
29.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
29.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
28.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
28.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
27.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
26.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
26.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
26.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
25.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
24.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
24.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
24.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
24.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
23.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
23.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
23.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
23.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
23.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
23.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
23.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
23.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
22.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
22.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
22.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
22.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
22.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
22.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
22.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
21.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
21.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
21.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
20.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
20.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
19.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
19.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
19.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
19.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
19.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
19.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
19.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
18.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
18.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
18.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
18.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
18.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
18.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
18.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
17.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
17.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
17.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
17.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
17.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
16.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
16.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
16.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
16.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
16.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
16.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
15.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
15.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
15.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
15.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
14.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
14.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
14.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
14.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
14.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
13.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
13.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
13.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
13.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
13.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
12.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
12.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
12.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
12.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
12.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
12.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
11.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
11.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
11.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
11.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
11.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
11.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
10.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
10.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
10.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
10.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
10.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
10.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
10.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
10.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
9.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
9.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
9.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
9.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
8.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
8.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
8.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
8.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
8.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
7.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
7.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
7.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
7.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
7.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
7.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
6.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
6.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
6.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
6.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
6.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
6.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
5.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
5.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
5.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
5.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
5.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
5.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
4.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
4.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
4.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
3.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
3.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
2.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
1.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
478
Normal
1.2
536
Normal
1.1
524
Normal
0.9
863
Tumor
0.9
823
Tumor
0.8
816
Normal
0.8
728
Normal
0.8
716
Normal
0.7
714
Normal
0.7
444
Normal
0.7
852
Normal
0.7
968
Normal
0.7
1014
Normal
0.7
884
Normal
0.7
1013
Tumor
0.6
984
Normal
0.6
192
Normal
0.6
224
Normal
0.6
982
Normal
0.6
1044
Normal
0.6
958
Normal
0.6
978
Normal
0.6
498
Normal
0.6
538
Normal
0.6
212
Normal
0.5
738
Normal
0.5
918
Normal
0.5
516
Normal
0.5
814
Normal
0.5
977
Tumor
0.5
384
Normal
0.5
311
Tumor
0.5
1046
Normal
0.5
744
Normal
0.5
227
Tumor
0.5
742
Normal
0.5
813
Tumor
0.5
878
Normal
0.5
723
Tumor
0.5
737
Tumor
0.5
924
Normal
0.4
976
Normal
0.4
461
Tumor
0.4
312
Normal
0.4
1032
Normal
0.4
697
Tumor
0.4
964
Normal
0.4
211
Tumor
0.4
518
Normal
0.4
954
Normal
0.4
284
Normal
0.4
574
Normal
0.4
1028
Normal
0.4
1042
Normal
0.4
448
Normal
0.4
914
Normal
0.4
472
Normal
0.4
228
Normal
0.4
952
Normal
0.4
721
Tumor
0.4
944
Normal
0.4
786
Normal
0.4
722
Normal
0.4
364
Normal
0.4
546
Normal
0.3
938
Normal
0.3
916
Normal
0.3
882
Normal
0.3
528
Normal
0.3
1016
Normal
0.3
698
Normal
0.3
492
Normal
0.3
474
Normal
0.3
386
Normal
0.3
328
Normal
0.3
1022
Normal
0.3
415
Tumor
0.3
966
Normal
0.3
686
Normal
0.3
126
Normal
0.3
447
Tumor
0.3
283
Tumor
0.3
1027
Tumor
0.3
922
Normal
0.3
261
Tumor
0.3
355
Tumor
0.3
915
Tumor
0.3
431
Tumor
0.3
434
Normal
0.3
866
Normal
0.3
917
Tumor
0.3
1026
Normal
0.3
727
Tumor
0.3
471
Tumor
0.3
628
Normal
0.3
554
Normal
0.2
818
Normal
0.2
416
Normal
0.2
912
Normal
0.2
778
Normal
0.2
535
Tumor
0.2
568
Normal
0.2
956
Normal
0.2
881
Tumor
0.2
468
Normal
0.2
963
Tumor
0.2
817
Tumor
0.2
482
Normal
0.2
943
Tumor
0.2
857
Tumor
0.2
953
Tumor
0.2
298
Normal
0.2
383
Tumor
0.2
955
Tumor
0.2
286
Normal
0.2
824
Normal
0.2
864
Normal
0.1
627
Tumor
0.1
572
Normal
0.1
146
Normal
0.1
926
Normal
0.1
484
Normal
0.1
715
Tumor
0.1
412
Normal
0.1
534
Normal
0.1
332
Normal
0.1
874
Normal
0.1
411
Tumor
0.1
913
Tumor
0.1
756
Normal
0.1
396
Normal
0.1
696
Normal
0.1
545
Tumor
0.1
462
Normal
0.1
223
Tumor
0.1
868
Normal
0.1
456
Normal
0.1
957
Tumor
0.1
487
Tumor
0.1
514
Normal
0.1
777
Tumor
0.1
713
Tumor
0.1
558
Normal
0.1
352
Normal
0.1
662
Normal
0.0
1043
Tumor
0.0
527
Tumor
0.0
483
Tumor
0.0
142
Normal
0.0
746
Normal
0.0
967
Tumor
0.0
861
Tumor
0.0
515
Tumor
0.0
862
Normal
0.0
473
Tumor
0.0
1045
Tumor
0.0
488
Normal
0.0
494
Normal
0.0
481
Tumor
0.0
672
Normal
0.0
477
Tumor
0.0
138
Normal
0.0
877
Tumor
0.0
278
Normal
0.0
341
Tumor
0.0
446
Normal
0.0
218
Normal
0.0
858
Normal
0.0
231
Tumor
0.0
526
Normal
0.0
815
Tumor
0.0
563
Tumor
0.0
533
Tumor
0.0
883
Tumor
0.0
1041
Tumor
-0.1
867
Tumor
-0.1
214
Normal
-0.1
616
Normal
-0.1
663
Tumor
-0.1
394
Normal
-0.1
366
Normal
-0.1
268
Normal
-0.1
491
Tumor
-0.1
553
Tumor
-0.1
741
Tumor
-0.1
344
Normal
-0.1
362
Normal
-0.1
222
Normal
-0.1
342
Normal
-0.1
618
Normal
-0.1
464
Normal
-0.1
665
Tumor
-0.1
745
Tumor
-0.1
636
Normal
-0.1
356
Normal
-0.1
466
Normal
-0.1
617
Tumor
-0.2
571
Tumor
-0.2
188
Normal
-0.2
136
Normal
-0.2
641
Tumor
-0.2
664
Normal
-0.2
424
Normal
-0.2
921
Tumor
-0.2
525
Tumor
-0.2
557
Tumor
-0.2
975
Tumor
-0.2
493
Tumor
-0.2
865
Tumor
-0.2
911
Tumor
-0.2
124
Normal
-0.2
564
Normal
-0.2
467
Tumor
-0.2
351
Tumor
-0.2
517
Tumor
-0.2
354
Normal
-0.2
297
Tumor
-0.2
128
Normal
-0.2
666
Normal
-0.3
262
Normal
-0.3
455
Tumor
-0.3
642
Normal
-0.3
327
Tumor
-0.3
421
Tumor
-0.3
445
Tumor
-0.3
513
Tumor
-0.3
983
Tumor
-0.3
343
Tumor
-0.3
452
Normal
-0.3
232
Normal
-0.3
523
Tumor
-0.3
213
Tumor
-0.3
161
Tumor
-0.3
388
Normal
-0.3
357
Tumor
-0.3
196
Normal
-0.3
951
Tumor
-0.3
755
Tumor
-0.3
112
Tumor
-0.3
432
Normal
-0.3
981
Tumor
-0.3
451
Tumor
-0.3
171
Tumor
-0.3
785
Tumor
-0.3
422
Normal
-0.3
185
Tumor
-0.4
392
Normal
-0.4
615
Tumor
-0.4
537
Tumor
-0.4
314
Normal
-0.4
937
Tumor
-0.4
272
Normal
-0.4
368
Normal
-0.4
363
Tumor
-0.4
923
Tumor
-0.4
965
Tumor
-0.4
313
Tumor
-0.4
111
Normal
-0.4
358
Normal
-0.4
148
Normal
-0.4
925
Tumor
-0.4
463
Tumor
-0.4
635
Tumor
-0.4
376
Normal
-0.4
257
Tumor
-0.4
1015
Tumor
-0.4
873
Tumor
-0.5
428
Normal
-0.5
671
Tumor
-0.5
125
Tumor
-0.5
648
Normal
-0.5
187
Tumor
-0.5
132
Normal
-0.5
647
Tumor
-0.5
195
Tumor
-0.5
426
Normal
-0.5
414
Normal
-0.5
141
Tumor
-0.5
497
Tumor
-0.5
436
Normal
-0.5
145
Tumor
-0.6
217
Tumor
-0.6
114
Normal
-0.6
186
Normal
-0.6
395
Tumor
-0.6
1025
Tumor
-0.6
567
Tumor
-0.7
365
Tumor
-0.7
375
Tumor
-0.7
851
Tumor
-0.7
162
Normal
-0.7
191
Tumor
-0.7
285
Tumor
-0.7
147
Tumor
-0.7
271
Tumor
-0.7
137
Tumor
-0.7
172
Normal
-0.7
425
Tumor
-0.8
1031
Tumor
-0.8
661
Tumor
-0.8
433
Tumor
-0.8
361
Tumor
-0.8
367
Tumor
-0.8
427
Tumor
-0.8
258
Normal
-0.9
221
Tumor
-0.9
423
Tumor
-0.9
413
Tumor
-0.9
267
Tumor
-0.9
573
Tumor
-0.9
435
Tumor
-0.9
353
Tumor
-0.9
443
Tumor
-0.9
1021
Tumor
-0.9
385
Tumor
-1.0
277
Tumor
-1.0
123
Tumor
-1.0
127
Tumor
-1.1
135
Tumor
-1.1
331
Tumor
-1.1
113
Tumor
-1.1
724
Normal
-1.1
465
Tumor
-1.2
387
Tumor
-1.2
695
Tumor
-1.4
131
Tumor
-1.7
391
Tumor
-1.7
685
Tumor
-1.9
393
Tumor
-2.0
743
Tumor
-2.4
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.