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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RPUSD3 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
26.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
82.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
65.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
62.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
60.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
60.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
59.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
59.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
58.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
58.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
57.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
56.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
55.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
53.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
51.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
50.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
47.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
46.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
45.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
45.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
45.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
45.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
43.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
43.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
43.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
42.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
42.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
42.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
41.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
41.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
40.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
40.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
40.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
40.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
40.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
40.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
40.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
40.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
40.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
39.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
39.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
39.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
38.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
38.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
38.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
37.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
37.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
37.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
37.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
37.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
37.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
37.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
36.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
36.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
36.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
36.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
36.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
35.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
35.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
35.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
35.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
35.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
34.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
34.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
34.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
34.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
34.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
34.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
34.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
34.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
34.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
33.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
33.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
33.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
33.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
32.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
32.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
32.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
32.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
32.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
32.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
32.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
31.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
31.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
31.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
31.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
31.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
31.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
30.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
30.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
30.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
30.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
30.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
29.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
29.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
29.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
29.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
29.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
29.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
29.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
29.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
29.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
29.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
29.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
29.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
29.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
28.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
28.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
28.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
28.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
28.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
28.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
28.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
28.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
28.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
28.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
28.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
28.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
28.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
28.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
28.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
27.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
27.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
27.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
27.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
27.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
27.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
27.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
27.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
27.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
27.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
27.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
27.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
27.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
27.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
27.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
27.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
27.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
26.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
26.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
26.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
26.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
26.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
26.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
26.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
26.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
26.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
26.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
26.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
26.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
26.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
26.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
25.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
25.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
25.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
25.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
25.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
25.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
25.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
25.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
25.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
25.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
25.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
25.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
25.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
25.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
25.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
25.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
25.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
25.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
25.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
25.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
24.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
24.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
24.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
24.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
24.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
24.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
24.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
24.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
24.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
24.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
24.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
24.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
24.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
24.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
24.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
23.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
23.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
23.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
23.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
23.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
23.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
23.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
23.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
23.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
23.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
23.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
23.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
23.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
23.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
23.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
23.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
23.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
23.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
23.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
22.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
22.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
22.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
22.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
22.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
22.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
22.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
22.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
22.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
22.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
22.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
22.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
22.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
22.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
22.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
22.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
22.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
22.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
22.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
21.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
21.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
21.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
21.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
21.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
21.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
21.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
21.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
21.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
21.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
21.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
21.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
21.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
21.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
20.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
20.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
20.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
20.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
20.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
20.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
20.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
20.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
20.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
20.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
20.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
20.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
20.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
20.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
20.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
20.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
19.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
19.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
19.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
19.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
19.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
19.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
19.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
19.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
19.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
19.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
19.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
19.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
19.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
19.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
19.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
18.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
18.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
18.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
18.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
18.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
18.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
18.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
18.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
18.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
18.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
18.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
18.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
18.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
17.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
17.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
17.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
17.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
17.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
17.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
17.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
17.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
17.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
17.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
17.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
17.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
17.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
17.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
17.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
17.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
17.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
16.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
16.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
16.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
16.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
16.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
16.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
16.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
16.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
16.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
15.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
15.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
15.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
15.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
15.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
15.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
15.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
15.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
15.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
15.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
15.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
15.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
15.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
14.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
14.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
14.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
14.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
14.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
14.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
14.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
14.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
14.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
14.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
14.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
14.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
14.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
14.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
14.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
14.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
14.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
13.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
13.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
13.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
13.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
13.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
13.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
12.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
12.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
12.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
12.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
12.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
12.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
11.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
11.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
11.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
11.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
11.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
11.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
11.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
11.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
9.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
9.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
8.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RPUSD3 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.5
Number of samples
231
Samples
Sample
Description
TPM
DO45193
0 years, female, NA, stage:4, dead, 120 days
53.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
45.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
39.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
39.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
39.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
35.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
34.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
33.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
33.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
33.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
31.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
31.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
30.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
29.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
28.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
28.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
27.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
27.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
27.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
27.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
26.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
26.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
26.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
25.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
25.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
25.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
25.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
25.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
25.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
25.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
25.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
24.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
24.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
24.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
24.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
23.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
23.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
23.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
22.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
22.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
22.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
22.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
22.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
21.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
21.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
21.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
21.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
21.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
21.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
20.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
20.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
20.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
20.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
20.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
20.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
20.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
20.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
20.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
20.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
19.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
19.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
19.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
19.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
19.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
19.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
19.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
19.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
19.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
19.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
18.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
18.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
18.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
18.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
18.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
18.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
18.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
17.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
17.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
17.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
17.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
17.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
17.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
17.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
17.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
17.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
16.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
16.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
16.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
16.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
16.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
16.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
16.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
16.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
16.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
16.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
16.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
16.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
16.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
16.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
16.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
16.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
15.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
15.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
15.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
15.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
15.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
15.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
15.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
15.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
15.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
14.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
14.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
14.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
14.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
14.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
14.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
14.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
14.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
14.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
14.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
14.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
14.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
14.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
14.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
14.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
14.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
14.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
14.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
14.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
14.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
14.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
14.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
14.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
13.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
13.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
13.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
13.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
13.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
13.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
13.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
13.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
13.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
13.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
13.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
13.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
13.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
12.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
12.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
12.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
12.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
12.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
12.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
12.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
12.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
12.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
12.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
12.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
12.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
12.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
12.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
12.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
12.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
12.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
12.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
12.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
11.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
11.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
11.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
11.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
11.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
11.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
11.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
11.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
11.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
11.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
11.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
11.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
11.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
11.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
11.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
11.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
10.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
10.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
10.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
10.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
10.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
10.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
10.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
10.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
10.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
10.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
10.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
10.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
10.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
9.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
9.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
9.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
9.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
9.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
9.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
9.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
9.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
9.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
9.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
9.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
9.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
9.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
9.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
9.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
8.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
8.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
8.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
8.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
8.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
8.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
8.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
8.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
8.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
7.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
7.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
7.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
7.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
6.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
6.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
6.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
6.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
6.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
6.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
4.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
227
Tumor
1.3
513
Tumor
1.2
965
Tumor
1.0
477
Tumor
1.0
367
Tumor
1.0
351
Tumor
0.9
525
Tumor
0.9
951
Tumor
0.9
537
Tumor
0.8
391
Tumor
0.8
483
Tumor
0.7
665
Tumor
0.7
127
Tumor
0.7
865
Tumor
0.7
925
Tumor
0.7
357
Tumor
0.7
361
Tumor
0.7
231
Tumor
0.7
221
Tumor
0.6
641
Tumor
0.6
267
Tumor
0.6
1041
Tumor
0.6
671
Tumor
0.6
363
Tumor
0.6
883
Tumor
0.5
937
Tumor
0.5
473
Tumor
0.5
435
Tumor
0.5
393
Tumor
0.5
557
Tumor
0.5
627
Tumor
0.5
387
Tumor
0.4
873
Tumor
0.4
648
Normal
0.4
413
Tumor
0.4
915
Tumor
0.4
186
Normal
0.4
465
Tumor
0.4
471
Tumor
0.4
191
Tumor
0.4
911
Tumor
0.4
481
Tumor
0.4
983
Tumor
0.4
145
Tumor
0.4
452
Normal
0.3
411
Tumor
0.3
746
Normal
0.3
436
Normal
0.3
571
Tumor
0.3
376
Normal
0.3
1046
Normal
0.3
642
Normal
0.3
957
Tumor
0.3
981
Tumor
0.3
222
Normal
0.3
171
Tumor
0.3
533
Tumor
0.3
921
Tumor
0.3
685
Tumor
0.3
285
Tumor
0.3
217
Tumor
0.3
195
Tumor
0.3
148
Normal
0.3
721
Tumor
0.3
365
Tumor
0.3
423
Tumor
0.3
664
Normal
0.3
385
Tumor
0.3
756
Normal
0.3
672
Normal
0.3
815
Tumor
0.3
618
Normal
0.3
162
Normal
0.3
271
Tumor
0.3
314
Normal
0.2
666
Normal
0.2
463
Tumor
0.2
388
Normal
0.2
662
Normal
0.2
615
Tumor
0.2
172
Normal
0.2
953
Tumor
0.2
724
Normal
0.2
661
Tumor
0.2
723
Tumor
0.2
491
Tumor
0.2
432
Normal
0.2
636
Normal
0.2
394
Normal
0.2
132
Normal
0.2
663
Tumor
0.2
858
Normal
0.2
466
Normal
0.2
616
Normal
0.2
1015
Tumor
0.2
232
Normal
0.2
331
Tumor
0.2
354
Normal
0.2
1045
Tumor
0.2
131
Tumor
0.2
258
Normal
0.2
743
Tumor
0.2
1043
Tumor
0.2
967
Tumor
0.2
713
Tumor
0.2
272
Normal
0.2
456
Normal
0.2
698
Normal
0.2
864
Normal
0.2
517
Tumor
0.2
484
Normal
0.2
912
Normal
0.2
913
Tumor
0.2
262
Normal
0.2
451
Tumor
0.2
446
Normal
0.1
213
Tumor
0.1
113
Tumor
0.1
392
Normal
0.1
196
Normal
0.1
214
Normal
0.1
572
Normal
0.1
1022
Normal
0.1
128
Normal
0.1
462
Normal
0.1
218
Normal
0.1
298
Normal
0.1
741
Tumor
0.1
358
Normal
0.1
468
Normal
0.1
715
Tumor
0.1
362
Normal
0.1
464
Normal
0.1
135
Tumor
0.1
914
Normal
0.1
366
Normal
0.1
368
Normal
0.1
567
Tumor
0.1
384
Normal
0.1
112
Tumor
0.1
964
Normal
0.1
1042
Normal
0.1
356
Normal
0.1
818
Normal
0.1
975
Tumor
0.1
482
Normal
0.1
257
Tumor
0.1
137
Tumor
0.1
851
Tumor
0.1
861
Tumor
0.1
488
Normal
0.1
396
Normal
0.1
944
Normal
0.1
696
Normal
0.1
1044
Normal
0.1
564
Normal
0.1
553
Tumor
0.1
867
Tumor
0.1
228
Normal
0.1
268
Normal
0.1
938
Normal
0.1
386
Normal
0.1
874
Normal
0.1
261
Tumor
0.1
881
Tumor
0.1
332
Normal
0.1
1016
Normal
0.0
448
Normal
0.0
745
Tumor
0.0
284
Normal
0.0
426
Normal
0.0
742
Normal
0.0
142
Normal
0.0
136
Normal
0.0
863
Tumor
0.0
494
Normal
0.0
445
Tumor
0.0
434
Normal
0.0
916
Normal
0.0
824
Normal
0.0
1031
Tumor
0.0
1032
Normal
0.0
755
Tumor
0.0
786
Normal
0.0
472
Normal
0.0
617
Tumor
0.0
728
Normal
0.0
922
Normal
0.0
884
Normal
0.0
342
Normal
0.0
493
Tumor
0.0
862
Normal
0.0
187
Tumor
0.0
877
Tumor
0.0
344
Normal
0.0
286
Normal
0.0
568
Normal
0.0
1013
Tumor
0.0
635
Tumor
0.0
364
Normal
0.0
526
Normal
0.0
918
Normal
0.0
514
Normal
0.0
141
Tumor
0.0
1014
Normal
0.0
878
Normal
0.0
414
Normal
0.0
528
Normal
0.0
523
Tumor
0.0
963
Tumor
0.0
312
Normal
0.0
416
Normal
0.0
722
Normal
0.0
353
Tumor
0.0
882
Normal
0.0
777
Tumor
0.0
188
Normal
0.0
443
Tumor
0.0
422
Normal
0.0
535
Tumor
0.0
785
Tumor
-0.1
573
Tumor
-0.1
686
Normal
-0.1
926
Normal
-0.1
424
Normal
-0.1
558
Normal
-0.1
185
Tumor
-0.1
744
Normal
-0.1
695
Tumor
-0.1
444
Normal
-0.1
1021
Tumor
-0.1
778
Normal
-0.1
487
Tumor
-0.1
546
Normal
-0.1
412
Normal
-0.1
395
Tumor
-0.1
524
Normal
-0.1
868
Normal
-0.1
714
Normal
-0.1
628
Normal
-0.1
976
Normal
-0.1
738
Normal
-0.1
563
Tumor
-0.1
427
Tumor
-0.1
866
Normal
-0.1
297
Tumor
-0.1
277
Tumor
-0.1
111
Normal
-0.1
352
Normal
-0.1
192
Normal
-0.1
955
Tumor
-0.1
478
Normal
-0.1
924
Normal
-0.1
146
Normal
-0.1
278
Normal
-0.1
138
Normal
-0.1
467
Tumor
-0.1
952
Normal
-0.1
124
Normal
-0.1
647
Tumor
-0.1
114
Normal
-0.1
415
Tumor
-0.1
823
Tumor
-0.1
375
Tumor
-0.1
574
Normal
-0.1
1026
Normal
-0.1
433
Tumor
-0.2
1027
Tumor
-0.2
147
Tumor
-0.2
126
Normal
-0.2
716
Normal
-0.2
984
Normal
-0.2
161
Tumor
-0.2
982
Normal
-0.2
954
Normal
-0.2
421
Tumor
-0.2
383
Tumor
-0.2
534
Normal
-0.2
518
Normal
-0.2
431
Tumor
-0.2
727
Tumor
-0.2
857
Tumor
-0.2
968
Normal
-0.2
816
Normal
-0.2
224
Normal
-0.2
341
Tumor
-0.2
327
Tumor
-0.2
283
Tumor
-0.2
817
Tumor
-0.3
123
Tumor
-0.3
1028
Normal
-0.3
212
Normal
-0.3
328
Normal
-0.3
355
Tumor
-0.3
923
Tumor
-0.3
852
Normal
-0.3
455
Tumor
-0.3
492
Normal
-0.3
516
Normal
-0.3
428
Normal
-0.3
497
Tumor
-0.3
977
Tumor
-0.3
956
Normal
-0.3
461
Tumor
-0.3
966
Normal
-0.3
1025
Tumor
-0.3
311
Tumor
-0.3
536
Normal
-0.4
554
Normal
-0.4
498
Normal
-0.4
813
Tumor
-0.4
223
Tumor
-0.4
814
Normal
-0.4
125
Tumor
-0.4
313
Tumor
-0.4
447
Tumor
-0.4
958
Normal
-0.4
978
Normal
-0.4
343
Tumor
-0.4
527
Tumor
-0.5
697
Tumor
-0.5
474
Normal
-0.5
211
Tumor
-0.5
737
Tumor
-0.5
917
Tumor
-0.6
425
Tumor
-0.6
515
Tumor
-0.6
538
Normal
-0.6
943
Tumor
-0.7
545
Tumor
-0.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.