We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
0.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
41.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
8.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
5.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
3.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
2.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
2.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
2.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
2.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
2.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
2.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
1.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
1.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
1.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
1.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
1.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
1.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
1.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
1.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
1.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
1.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
1.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
1.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
0.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
0.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
0.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
0.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
0.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
0.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
0.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
0.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
0.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
0.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
0.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
0.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
0.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
0.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
0.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
0.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
0.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
0.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
0.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
0.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
0.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
0.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
0.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
0.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
0.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
0.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
0.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
0.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
0.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
0.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
0.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
0.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
0.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
0.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
0.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
0.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
0.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
0.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
0.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
0.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
0.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
0.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
0.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
0.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
0.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
0.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
0.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
0.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
0.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
0.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
0.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
0.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
0.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
0.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
0.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
0.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
0.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
0.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
0.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
0.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
0.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
0.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
0.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
0.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
0.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
0.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
0.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
0.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
0.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
0.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
0.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
0.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
0.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
0.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
0.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
0.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
0.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
0.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
0.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
0.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
0.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
0.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
0.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
0.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
0.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
0.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
0.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
0.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
0.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
0.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
0.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
0.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
0.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
0.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
0.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
0.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
0.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
0.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
0.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
0.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
0.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
0.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
0.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
0.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
0.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
0.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
0.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
0.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
0.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
0.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
0.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
0.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
0.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
0.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
0.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
0.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
0.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
0.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
0.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
0.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
0.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
0.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
0.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
0.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
0.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
0.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
0.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
0.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
0.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
0.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
0.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
0.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
0.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
0.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
0.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
0.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
0.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
0.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
0.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
0.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
0.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
0.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
0.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
0.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
0.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
0.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
0.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
0.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
0.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
0.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
0.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
0.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
0.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
0.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
0.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
0.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
0.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
0.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
0.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
0.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
0.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
0.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
0.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
0.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
0.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
0.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
0.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
0.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
0.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
0.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
0.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
0.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
0.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
0.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
0.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
0.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
0.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
0.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
0.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
0.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
0.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
0.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
0.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
0.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
0.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
0.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
0.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
0.8
Number of samples
231
Samples
Sample
Description
TPM
DO50829
0 years, male, NA, stage:3, alive, 570 days
13.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
6.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
6.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
5.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
5.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
4.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
4.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
4.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
3.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
3.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
2.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
2.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
2.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
2.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
2.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
2.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
2.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
2.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
2.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
1.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
1.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
1.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
1.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
1.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
1.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
1.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
1.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
1.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
1.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
1.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
1.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
1.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
1.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
1.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
1.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
1.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
1.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
1.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
1.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
1.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
1.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
1.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
1.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
1.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
1.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
1.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
1.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
1.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
1.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
1.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
1.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
1.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
1.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
1.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
0.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
0.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
0.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
0.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
0.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
0.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
0.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
0.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
0.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
0.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
0.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
0.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
0.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
0.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
0.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
0.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
0.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
0.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
0.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
0.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
0.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
0.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
0.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
0.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
0.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
0.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
0.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
0.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
0.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
0.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
0.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
0.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
0.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
0.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
0.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
0.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
0.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
0.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
0.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
0.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
0.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
0.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
0.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
0.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
0.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
0.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
0.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
0.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
0.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
0.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
0.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
0.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
0.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
0.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
0.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
0.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
0.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
0.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
0.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
0.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
0.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
0.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
0.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
0.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
0.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
0.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
0.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
0.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
0.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
0.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
0.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
0.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
0.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
0.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
0.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
0.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
0.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
0.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
0.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
0.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
0.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
0.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
0.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
0.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
0.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
0.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
0.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
0.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
0.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
0.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
0.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
0.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
0.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
0.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
0.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
0.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
0.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
0.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
0.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
0.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
0.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
0.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
0.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
0.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
0.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
0.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
0.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
0.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
0.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
0.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
0.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
0.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
0.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
0.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
0.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
0.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
0.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
0.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
0.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
0.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
0.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
0.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
0.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
0.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
0.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
0.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
0.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
0.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
0.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
0.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
0.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
0.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
0.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
0.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
0.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
0.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
0.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
0.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
0.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
0.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
0.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
0.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
0.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
0.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
0.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
0.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
0.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
0.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
0.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
0.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
0.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
0.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
0.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
0.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
311
Tumor
1.6
125
Tumor
1.4
661
Tumor
1.3
851
Tumor
1.2
917
Tumor
1.1
343
Tumor
1.1
724
Normal
1.1
187
Tumor
1.0
223
Tumor
1.0
211
Tumor
1.0
363
Tumor
1.0
1031
Tumor
1.0
713
Tumor
0.9
141
Tumor
0.9
385
Tumor
0.9
185
Tumor
0.9
213
Tumor
0.9
815
Tumor
0.9
224
Normal
0.8
375
Tumor
0.8
467
Tumor
0.8
861
Tumor
0.7
427
Tumor
0.7
161
Tumor
0.6
415
Tumor
0.6
817
Tumor
0.6
188
Normal
0.6
455
Tumor
0.6
492
Normal
0.6
715
Tumor
0.6
536
Normal
0.6
954
Normal
0.6
383
Tumor
0.6
195
Tumor
0.5
617
Tumor
0.5
823
Tumor
0.5
491
Tumor
0.5
697
Tumor
0.5
953
Tumor
0.5
135
Tumor
0.5
365
Tumor
0.5
421
Tumor
0.5
191
Tumor
0.5
814
Normal
0.4
857
Tumor
0.4
423
Tumor
0.4
137
Tumor
0.4
538
Normal
0.4
297
Tumor
0.4
966
Normal
0.4
921
Tumor
0.3
863
Tumor
0.3
413
Tumor
0.3
813
Tumor
0.3
975
Tumor
0.3
877
Tumor
0.3
268
Normal
0.3
525
Tumor
0.3
328
Normal
0.3
447
Tumor
0.3
444
Normal
0.3
493
Tumor
0.2
478
Normal
0.2
217
Tumor
0.2
883
Tumor
0.2
671
Tumor
0.2
434
Normal
0.2
356
Normal
0.2
952
Normal
0.2
262
Normal
0.2
498
Normal
0.2
126
Normal
0.2
721
Tumor
0.2
384
Normal
0.2
284
Normal
0.2
983
Tumor
0.2
145
Tumor
0.2
573
Tumor
0.2
878
Normal
0.2
386
Normal
0.2
461
Tumor
0.2
416
Normal
0.2
1045
Tumor
0.2
868
Normal
0.2
627
Tumor
0.2
727
Tumor
0.2
913
Tumor
0.2
227
Tumor
0.2
535
Tumor
0.2
366
Normal
0.1
1041
Tumor
0.1
916
Normal
0.1
192
Normal
0.1
925
Tumor
0.1
367
Tumor
0.1
361
Tumor
0.1
283
Tumor
0.1
362
Normal
0.1
364
Normal
0.1
331
Tumor
0.1
1015
Tumor
0.1
391
Tumor
0.1
978
Normal
0.1
938
Normal
0.1
744
Normal
0.1
641
Tumor
0.1
257
Tumor
0.1
1032
Normal
0.1
881
Tumor
0.1
124
Normal
0.1
412
Normal
0.0
943
Tumor
0.0
1027
Tumor
0.0
665
Tumor
0.0
1028
Normal
0.0
272
Normal
0.0
147
Tumor
0.0
716
Normal
0.0
778
Normal
0.0
1042
Normal
0.0
867
Tumor
0.0
852
Normal
0.0
387
Tumor
0.0
471
Tumor
0.0
368
Normal
0.0
537
Tumor
0.0
963
Tumor
0.0
114
Normal
0.0
376
Normal
0.0
131
Tumor
0.0
468
Normal
0.0
1025
Tumor
0.0
914
Normal
0.0
146
Normal
0.0
483
Tumor
0.0
1044
Normal
-0.1
432
Normal
-0.1
443
Tumor
-0.1
662
Normal
-0.1
355
Tumor
-0.1
463
Tumor
-0.1
738
Normal
-0.1
884
Normal
-0.1
976
Normal
-0.1
271
Tumor
-0.1
663
Tumor
-0.1
395
Tumor
-0.1
212
Normal
-0.1
984
Normal
-0.1
351
Tumor
-0.1
261
Tumor
-0.1
882
Normal
-0.1
113
Tumor
-0.1
944
Normal
-0.1
741
Tumor
-0.1
231
Tumor
-0.1
742
Normal
-0.1
628
Normal
-0.1
567
Tumor
-0.1
615
Tumor
-0.1
138
Normal
-0.1
232
Normal
-0.1
874
Normal
-0.1
267
Tumor
-0.1
686
Normal
-0.1
642
Normal
-0.1
396
Normal
-0.1
313
Tumor
-0.2
873
Tumor
-0.2
474
Normal
-0.2
816
Normal
-0.2
755
Tumor
-0.2
446
Normal
-0.2
1022
Normal
-0.2
388
Normal
-0.2
728
Normal
-0.2
162
Normal
-0.2
618
Normal
-0.2
553
Tumor
-0.2
1043
Tumor
-0.2
136
Normal
-0.2
422
Normal
-0.2
148
Normal
-0.2
554
Normal
-0.2
214
Normal
-0.2
142
Normal
-0.2
956
Normal
-0.2
392
Normal
-0.2
955
Tumor
-0.2
923
Tumor
-0.2
488
Normal
-0.2
746
Normal
-0.2
698
Normal
-0.2
277
Tumor
-0.3
436
Normal
-0.3
127
Tumor
-0.3
428
Normal
-0.3
722
Normal
-0.3
494
Normal
-0.3
696
Normal
-0.3
394
Normal
-0.3
723
Tumor
-0.3
546
Normal
-0.3
951
Tumor
-0.3
714
Normal
-0.3
448
Normal
-0.3
477
Tumor
-0.3
445
Tumor
-0.3
172
Normal
-0.3
465
Tumor
-0.3
1046
Normal
-0.3
672
Normal
-0.3
1021
Tumor
-0.3
327
Tumor
-0.3
451
Tumor
-0.3
666
Normal
-0.3
487
Tumor
-0.3
344
Normal
-0.4
425
Tumor
-0.4
484
Normal
-0.4
456
Normal
-0.4
1016
Normal
-0.4
685
Tumor
-0.4
1026
Normal
-0.4
545
Tumor
-0.4
915
Tumor
-0.4
1014
Normal
-0.4
534
Normal
-0.4
433
Tumor
-0.4
912
Normal
-0.4
911
Tumor
-0.4
258
Normal
-0.4
958
Normal
-0.4
524
Normal
-0.4
557
Tumor
-0.4
112
Tumor
-0.4
636
Normal
-0.4
982
Normal
-0.4
228
Normal
-0.4
286
Normal
-0.4
431
Tumor
-0.4
186
Normal
-0.4
818
Normal
-0.4
616
Normal
-0.4
647
Tumor
-0.4
278
Normal
-0.5
922
Normal
-0.5
918
Normal
-0.5
312
Normal
-0.5
424
Normal
-0.5
528
Normal
-0.5
865
Tumor
-0.5
937
Tumor
-0.5
357
Tumor
-0.5
533
Tumor
-0.5
411
Tumor
-0.5
464
Normal
-0.5
426
Normal
-0.5
111
Normal
-0.5
926
Normal
-0.5
924
Normal
-0.5
965
Tumor
-0.5
466
Normal
-0.5
574
Normal
-0.5
497
Tumor
-0.5
862
Normal
-0.5
745
Tumor
-0.5
472
Normal
-0.5
285
Tumor
-0.6
462
Normal
-0.6
858
Normal
-0.6
785
Tumor
-0.6
132
Normal
-0.6
358
Normal
-0.6
635
Tumor
-0.6
527
Tumor
-0.6
452
Normal
-0.6
824
Normal
-0.6
786
Normal
-0.6
737
Tumor
-0.6
968
Normal
-0.6
218
Normal
-0.6
964
Normal
-0.6
342
Normal
-0.6
171
Tumor
-0.6
571
Tumor
-0.6
352
Normal
-0.6
221
Tumor
-0.6
864
Normal
-0.6
648
Normal
-0.7
695
Tumor
-0.7
664
Normal
-0.7
482
Normal
-0.7
332
Normal
-0.7
756
Normal
-0.7
298
Normal
-0.7
563
Tumor
-0.7
481
Tumor
-0.7
967
Tumor
-0.7
196
Normal
-0.7
977
Tumor
-0.7
564
Normal
-0.7
981
Tumor
-0.7
515
Tumor
-0.7
517
Tumor
-0.7
414
Normal
-0.7
516
Normal
-0.7
572
Normal
-0.8
435
Tumor
-0.8
777
Tumor
-0.8
473
Tumor
-0.8
743
Tumor
-0.8
314
Normal
-0.8
866
Normal
-0.8
514
Normal
-0.9
393
Tumor
-0.9
123
Tumor
-0.9
128
Normal
-0.9
957
Tumor
-0.9
354
Normal
-0.9
353
Tumor
-0.9
568
Normal
-0.9
1013
Tumor
-1.0
222
Normal
-1.0
558
Normal
-1.0
341
Tumor
-1.0
526
Normal
-1.3
523
Tumor
-1.4
513
Tumor
-1.4
518
Normal
-1.4
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
