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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NSMCE2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
22.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
88.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
71.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
69.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
64.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
60.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
58.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
57.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
55.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
54.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
51.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
50.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
50.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
50.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
49.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
49.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
48.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
47.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
47.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
47.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
46.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
46.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
46.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
46.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
46.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
46.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
44.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
44.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
44.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
43.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
43.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
43.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
42.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
42.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
41.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
41.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
40.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
40.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
40.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
39.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
39.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
38.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
38.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
37.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
37.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
37.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
37.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
37.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
37.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
37.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
37.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
35.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
35.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
35.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
35.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
34.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
34.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
34.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
34.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
34.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
34.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
34.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
33.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
33.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
33.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
33.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
33.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
33.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
33.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
32.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
32.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
32.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
32.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
32.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
31.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
31.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
31.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
31.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
31.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
31.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
30.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
30.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
30.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
30.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
30.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
29.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
29.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
29.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
29.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
29.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
29.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
28.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
28.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
28.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
28.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
28.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
28.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
27.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
27.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
27.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
27.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
27.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
26.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
26.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
26.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
26.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
26.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
26.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
26.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
25.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
25.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
25.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
25.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
25.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
25.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
25.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
25.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
25.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
25.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
25.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
25.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
24.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
24.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
24.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
24.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
24.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
24.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
24.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
24.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
24.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
24.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
23.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
23.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
23.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
23.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
23.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
23.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
23.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
23.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
23.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
23.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
23.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
23.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
22.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
22.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
22.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
21.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
21.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
21.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
21.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
21.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
21.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
21.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
21.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
21.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
21.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
21.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
21.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
21.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
21.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
20.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
20.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
20.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
20.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
20.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
20.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
20.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
20.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
20.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
20.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
19.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
19.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
19.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
19.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
19.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
19.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
19.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
19.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
19.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
19.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
19.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
19.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
19.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
18.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
18.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
18.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
18.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
18.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
18.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
18.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
18.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
18.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
18.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
18.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
18.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
18.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
18.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
18.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
18.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
18.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
18.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
18.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
18.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
17.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
17.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
17.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
17.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
17.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
17.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
17.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
17.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
17.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
17.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
17.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
17.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
17.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
17.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
17.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
17.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
17.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
16.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
16.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
16.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
16.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
16.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
16.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
16.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
16.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
16.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
16.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
16.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
16.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
15.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
15.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
15.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
15.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
15.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
15.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
15.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
15.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
15.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
15.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
15.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
15.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
15.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
15.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
14.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
14.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
14.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
14.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
14.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
14.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
14.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
14.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
14.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
14.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
14.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
14.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
14.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
14.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
13.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
13.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
13.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
13.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
13.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
13.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
13.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
13.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
13.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
13.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
13.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
13.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
13.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
12.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
12.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
12.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
12.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
12.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
12.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
12.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
12.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
12.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
12.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
12.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
12.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
12.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
12.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
12.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
12.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
12.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
11.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
11.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
11.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
11.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
11.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
11.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
11.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
11.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
11.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
11.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
11.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
11.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
11.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
11.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
11.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
11.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
11.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
11.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
10.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
10.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
10.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
10.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
10.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
10.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
10.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
10.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
10.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
10.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
10.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
10.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
10.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
9.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
9.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
9.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
9.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
9.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
9.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
9.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
9.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
9.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
9.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
9.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
9.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
9.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
9.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
9.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
8.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
8.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
8.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
8.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
8.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
8.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
8.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
8.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
7.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
7.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
7.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
7.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
7.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
7.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
7.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
7.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
6.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
6.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
6.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
6.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
6.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
5.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
5.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NSMCE2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
17.1
Number of samples
231
Samples
Sample
Description
TPM
DO23519
0 years, male, NA, stage:3, alive, 630 days
84.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
59.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
51.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
50.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
46.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
43.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
43.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
42.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
41.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
40.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
38.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
38.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
38.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
36.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
35.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
35.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
34.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
34.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
33.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
33.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
32.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
32.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
31.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
31.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
30.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
29.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
29.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
29.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
27.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
27.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
26.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
26.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
26.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
26.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
26.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
25.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
25.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
25.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
25.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
24.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
23.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
23.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
23.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
23.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
22.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
22.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
22.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
22.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
22.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
21.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
21.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
21.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
21.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
21.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
21.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
21.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
21.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
21.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
20.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
20.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
20.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
20.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
20.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
20.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
19.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
19.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
19.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
18.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
18.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
18.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
18.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
18.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
18.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
18.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
17.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
17.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
17.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
17.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
17.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
17.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
17.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
17.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
17.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
17.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
17.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
17.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
17.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
17.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
17.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
16.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
16.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
16.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
16.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
16.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
16.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
16.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
16.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
16.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
15.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
15.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
15.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
15.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
15.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
15.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
15.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
15.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
15.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
15.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
15.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
15.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
15.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
15.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
14.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
14.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
14.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
14.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
14.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
14.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
14.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
14.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
14.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
14.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
14.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
14.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
14.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
14.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
14.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
13.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
13.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
13.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
13.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
13.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
13.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
13.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
13.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
13.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
13.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
13.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
13.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
13.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
13.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
13.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
12.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
12.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
12.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
12.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
12.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
12.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
12.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
12.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
12.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
12.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
12.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
11.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
11.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
11.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
11.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
11.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
11.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
11.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
11.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
11.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
11.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
10.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
10.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
10.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
10.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
10.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
10.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
10.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
10.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
10.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
10.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
10.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
10.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
9.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
9.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
9.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
9.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
9.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
9.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
9.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
9.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
9.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
9.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
9.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
9.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
9.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
9.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
9.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
9.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
9.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
8.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
8.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
8.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
8.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
8.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
8.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
8.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
8.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
8.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
8.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
8.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
7.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
7.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
7.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
7.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
7.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
7.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
7.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
7.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
7.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
6.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
6.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
6.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
6.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
6.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
5.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
5.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
5.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
4.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
4.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
4.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
4.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
3.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
3.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
3.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
497
Tumor
1.4
965
Tumor
1.2
493
Tumor
1.2
557
Tumor
1.2
537
Tumor
1.1
957
Tumor
1.1
967
Tumor
1.0
1031
Tumor
1.0
641
Tumor
1.0
975
Tumor
0.9
663
Tumor
0.9
925
Tumor
0.9
267
Tumor
0.9
313
Tumor
0.8
331
Tumor
0.8
483
Tumor
0.8
473
Tumor
0.8
211
Tumor
0.7
865
Tumor
0.7
921
Tumor
0.7
817
Tumor
0.7
311
Tumor
0.7
425
Tumor
0.7
471
Tumor
0.7
823
Tumor
0.7
283
Tumor
0.7
777
Tumor
0.7
1013
Tumor
0.7
523
Tumor
0.7
467
Tumor
0.6
881
Tumor
0.6
567
Tumor
0.6
131
Tumor
0.6
743
Tumor
0.6
851
Tumor
0.6
951
Tumor
0.6
1041
Tumor
0.6
671
Tumor
0.5
387
Tumor
0.5
391
Tumor
0.5
533
Tumor
0.5
661
Tumor
0.5
113
Tumor
0.5
721
Tumor
0.5
937
Tumor
0.5
737
Tumor
0.5
135
Tumor
0.5
943
Tumor
0.5
413
Tumor
0.5
647
Tumor
0.5
553
Tumor
0.5
724
Normal
0.5
923
Tumor
0.5
715
Tumor
0.5
221
Tumor
0.5
517
Tumor
0.4
385
Tumor
0.4
1021
Tumor
0.4
445
Tumor
0.4
357
Tumor
0.4
341
Tumor
0.4
545
Tumor
0.4
695
Tumor
0.4
271
Tumor
0.4
515
Tumor
0.4
867
Tumor
0.3
813
Tumor
0.3
277
Tumor
0.3
455
Tumor
0.3
814
Normal
0.3
461
Tumor
0.3
465
Tumor
0.3
716
Normal
0.3
857
Tumor
0.3
161
Tumor
0.3
463
Tumor
0.3
1043
Tumor
0.3
484
Normal
0.3
375
Tumor
0.3
328
Normal
0.3
487
Tumor
0.3
384
Normal
0.3
196
Normal
0.3
297
Tumor
0.3
917
Tumor
0.3
213
Tumor
0.3
884
Normal
0.3
858
Normal
0.3
366
Normal
0.3
443
Tumor
0.3
963
Tumor
0.3
367
Tumor
0.3
824
Normal
0.3
1025
Tumor
0.3
365
Tumor
0.3
861
Tumor
0.3
232
Normal
0.3
383
Tumor
0.3
481
Tumor
0.3
187
Tumor
0.3
818
Normal
0.2
535
Tumor
0.2
351
Tumor
0.2
427
Tumor
0.2
922
Normal
0.2
883
Tumor
0.2
361
Tumor
0.2
477
Tumor
0.2
492
Normal
0.2
525
Tumor
0.2
727
Tumor
0.2
524
Normal
0.2
231
Tumor
0.2
873
Tumor
0.2
516
Normal
0.2
863
Tumor
0.2
958
Normal
0.2
411
Tumor
0.2
953
Tumor
0.2
815
Tumor
0.2
491
Tumor
0.2
666
Normal
0.2
362
Normal
0.2
355
Tumor
0.2
745
Tumor
0.2
141
Tumor
0.2
722
Normal
0.2
394
Normal
0.2
1046
Normal
0.2
482
Normal
0.2
665
Tumor
0.2
526
Normal
0.2
472
Normal
0.2
376
Normal
0.2
257
Tumor
0.1
926
Normal
0.1
616
Normal
0.1
514
Normal
0.1
217
Tumor
0.1
913
Tumor
0.1
258
Normal
0.1
686
Normal
0.1
983
Tumor
0.1
786
Normal
0.1
364
Normal
0.1
534
Normal
0.1
488
Normal
0.1
746
Normal
0.1
354
Normal
0.1
142
Normal
0.1
191
Tumor
0.1
563
Tumor
0.1
123
Tumor
0.1
478
Normal
0.1
1027
Tumor
0.1
664
Normal
0.1
685
Tumor
0.1
697
Tumor
0.1
628
Normal
0.1
218
Normal
0.1
1045
Tumor
0.1
964
Normal
0.1
618
Normal
0.1
742
Normal
0.1
714
Normal
0.1
968
Normal
0.1
924
Normal
0.1
368
Normal
0.1
431
Tumor
0.1
498
Normal
0.1
852
Normal
0.1
388
Normal
0.1
268
Normal
0.1
494
Normal
0.1
222
Normal
0.1
114
Normal
0.1
223
Tumor
0.1
572
Normal
0.1
662
Normal
0.1
421
Tumor
0.1
352
Normal
0.0
916
Normal
0.0
127
Tumor
0.0
912
Normal
0.0
868
Normal
0.0
1014
Normal
0.0
982
Normal
0.0
648
Normal
0.0
1042
Normal
0.0
171
Tumor
0.0
447
Tumor
0.0
386
Normal
0.0
536
Normal
0.0
474
Normal
0.0
392
Normal
0.0
778
Normal
0.0
627
Tumor
0.0
918
Normal
0.0
195
Tumor
0.0
617
Tumor
0.0
978
Normal
0.0
984
Normal
0.0
214
Normal
0.0
327
Tumor
0.0
1032
Normal
0.0
571
Tumor
0.0
864
Normal
0.0
696
Normal
0.0
192
Normal
0.0
272
Normal
0.0
573
Tumor
0.0
966
Normal
0.0
866
Normal
0.0
976
Normal
0.0
977
Tumor
0.0
435
Tumor
0.0
723
Tumor
0.0
546
Normal
0.0
224
Normal
0.0
538
Normal
0.0
396
Normal
0.0
882
Normal
-0.1
741
Tumor
-0.1
636
Normal
-0.1
874
Normal
-0.1
615
Tumor
-0.1
816
Normal
-0.1
343
Tumor
-0.1
462
Normal
-0.1
284
Normal
-0.1
262
Normal
-0.1
878
Normal
-0.1
136
Normal
-0.1
744
Normal
-0.1
1028
Normal
-0.1
862
Normal
-0.1
558
Normal
-0.1
877
Tumor
-0.1
756
Normal
-0.1
415
Tumor
-0.1
444
Normal
-0.1
1044
Normal
-0.1
261
Tumor
-0.1
278
Normal
-0.1
395
Tumor
-0.1
642
Normal
-0.1
755
Tumor
-0.1
132
Normal
-0.1
1016
Normal
-0.1
954
Normal
-0.1
738
Normal
-0.1
298
Normal
-0.1
185
Tumor
-0.1
433
Tumor
-0.1
672
Normal
-0.1
393
Tumor
-0.1
111
Normal
-0.1
527
Tumor
-0.1
146
Normal
-0.1
698
Normal
-0.1
915
Tumor
-0.1
568
Normal
-0.1
128
Normal
-0.1
564
Normal
-0.1
938
Normal
-0.1
554
Normal
-0.1
126
Normal
-0.2
145
Tumor
-0.2
956
Normal
-0.2
286
Normal
-0.2
448
Normal
-0.2
353
Tumor
-0.2
416
Normal
-0.2
944
Normal
-0.2
574
Normal
-0.2
138
Normal
-0.2
635
Tumor
-0.2
1015
Tumor
-0.2
513
Tumor
-0.2
785
Tumor
-0.2
228
Normal
-0.2
137
Tumor
-0.2
464
Normal
-0.2
414
Normal
-0.2
1022
Normal
-0.2
911
Tumor
-0.2
125
Tumor
-0.2
356
Normal
-0.2
358
Normal
-0.2
363
Tumor
-0.2
112
Tumor
-0.2
981
Tumor
-0.2
466
Normal
-0.2
312
Normal
-0.2
728
Normal
-0.2
528
Normal
-0.2
412
Normal
-0.2
451
Tumor
-0.2
436
Normal
-0.3
713
Tumor
-0.3
314
Normal
-0.3
952
Normal
-0.3
344
Normal
-0.3
424
Normal
-0.3
456
Normal
-0.3
212
Normal
-0.3
422
Normal
-0.3
342
Normal
-0.3
426
Normal
-0.3
428
Normal
-0.3
1026
Normal
-0.3
432
Normal
-0.4
423
Tumor
-0.4
124
Normal
-0.4
147
Tumor
-0.4
188
Normal
-0.4
227
Tumor
-0.4
434
Normal
-0.4
468
Normal
-0.4
914
Normal
-0.5
332
Normal
-0.5
446
Normal
-0.5
452
Normal
-0.5
518
Normal
-0.5
186
Normal
-0.6
955
Tumor
-0.6
172
Normal
-0.6
148
Normal
-0.7
162
Normal
-0.7
285
Tumor
-1.0
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
