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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ZDHHC5 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
82.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
64.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
55.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
51.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
41.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
39.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
38.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
38.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
37.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
37.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
37.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
36.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
35.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
35.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
35.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
34.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
34.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
34.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
33.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
32.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
31.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
30.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
28.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
28.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
27.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
27.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
27.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
27.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
27.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
26.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
26.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
26.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
26.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
25.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
25.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
25.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
25.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
25.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
24.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
24.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
24.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
24.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
24.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
24.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
24.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
23.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
23.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
23.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
23.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
23.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
23.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
23.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
23.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
22.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
22.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
22.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
22.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
22.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
22.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
22.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
22.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
22.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
22.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
22.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
22.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
21.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
21.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
21.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
21.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
21.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
21.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
20.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
20.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
20.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
20.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
20.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
20.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
20.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
20.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
20.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
20.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
20.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
19.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
19.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
19.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
19.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
19.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
19.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
19.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
19.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
19.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
19.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
19.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
19.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
19.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
18.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
18.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
18.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
18.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
18.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
18.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
18.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
18.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
18.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
18.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
18.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
18.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
17.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
17.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
17.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
17.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
17.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
17.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
17.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
17.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
17.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
17.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
16.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
16.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
16.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
16.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
16.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
16.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
16.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
16.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
16.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
16.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
15.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
15.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
15.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
15.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
15.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
15.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
15.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
15.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
15.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
14.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
14.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
14.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
14.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
14.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
14.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
14.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
13.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
13.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
13.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
13.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
13.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
13.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
13.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
13.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
13.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
13.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
13.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
13.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
13.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
12.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
12.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
12.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
12.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
12.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
12.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
12.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
12.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
12.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
12.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
12.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
11.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
11.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
11.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
11.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
11.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
11.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
11.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
11.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
10.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
10.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
10.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
10.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
10.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
10.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
10.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
10.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
10.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
10.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
10.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
10.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
9.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
9.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
9.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
9.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
9.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
9.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
9.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
9.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
9.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
9.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
9.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
9.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
9.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
9.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
9.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
9.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
9.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
8.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
8.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
8.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
8.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
8.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
8.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
8.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
8.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
8.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
8.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
7.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
7.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
7.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
7.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
7.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
7.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
7.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
7.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
7.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
6.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
6.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
6.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
6.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
6.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
6.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
6.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
6.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
6.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
6.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
6.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
6.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
6.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
6.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
6.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
5.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
5.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
5.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
5.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
5.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
5.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
5.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
5.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
5.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
5.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
5.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
4.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
4.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
4.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
4.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
4.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
4.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
4.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
4.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
4.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
3.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
3.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
3.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
3.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
3.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
3.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
2.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
2.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
2.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
2.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
2.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
2.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
2.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
2.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
2.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
2.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
2.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
2.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
1.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
1.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
1.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
1.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
1.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
1.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
1.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
1.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
1.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
1.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
1.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
1.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
1.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
1.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
1.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
1.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
1.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ZDHHC5 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
19.1
Number of samples
231
Samples
Sample
Description
TPM
DO45211
0 years, male, NA, stage:3, alive, 240 days
58.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
49.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
41.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
40.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
37.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
33.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
31.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
31.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
30.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
29.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
29.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
28.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
28.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
27.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
27.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
27.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
26.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
26.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
26.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
26.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
26.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
26.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
25.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
25.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
24.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
24.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
24.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
24.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
24.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
24.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
24.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
24.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
24.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
24.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
23.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
23.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
23.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
23.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
23.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
23.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
23.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
23.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
23.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
23.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
23.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
23.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
23.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
22.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
22.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
22.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
22.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
22.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
22.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
22.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
22.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
22.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
22.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
22.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
22.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
22.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
22.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
22.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
22.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
21.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
21.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
21.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
21.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
21.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
21.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
21.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
21.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
21.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
21.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
21.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
21.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
20.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
20.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
20.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
20.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
20.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
20.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
20.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
20.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
20.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
20.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
20.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
20.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
19.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
19.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
19.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
19.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
19.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
19.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
19.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
19.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
19.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
19.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
19.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
19.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
19.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
19.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
19.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
19.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
19.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
19.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
19.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
19.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
19.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
19.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
19.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
19.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
18.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
18.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
18.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
18.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
18.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
18.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
18.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
18.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
18.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
18.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
18.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
18.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
18.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
18.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
18.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
18.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
18.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
18.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
17.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
17.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
17.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
17.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
17.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
17.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
17.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
17.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
17.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
17.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
17.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
17.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
17.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
17.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
17.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
17.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
17.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
16.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
16.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
16.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
16.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
16.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
16.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
16.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
16.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
16.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
16.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
16.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
16.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
15.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
15.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
15.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
15.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
15.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
15.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
15.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
15.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
15.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
15.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
15.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
15.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
15.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
15.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
15.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
14.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
14.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
14.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
14.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
14.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
14.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
14.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
14.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
14.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
14.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
14.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
14.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
14.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
14.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
13.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
13.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
13.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
13.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
13.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
13.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
13.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
13.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
13.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
13.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
13.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
13.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
12.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
12.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
12.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
12.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
12.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
12.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
12.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
12.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
12.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
12.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
12.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
12.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
12.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
11.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
11.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
11.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
11.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
11.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
11.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
11.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
10.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
10.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
10.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
10.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
9.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
9.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
9.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
9.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
8.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
8.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
7.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
6.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1025
Tumor
0.9
745
Tumor
0.9
777
Tumor
0.9
737
Tumor
0.8
257
Tumor
0.7
635
Tumor
0.7
955
Tumor
0.7
823
Tumor
0.7
615
Tumor
0.6
685
Tumor
0.6
817
Tumor
0.6
523
Tumor
0.5
553
Tumor
0.5
515
Tumor
0.5
743
Tumor
0.5
627
Tumor
0.5
1027
Tumor
0.5
953
Tumor
0.5
327
Tumor
0.5
527
Tumor
0.5
1041
Tumor
0.5
533
Tumor
0.5
513
Tumor
0.5
922
Normal
0.5
921
Tumor
0.4
517
Tumor
0.4
425
Tumor
0.4
545
Tumor
0.4
883
Tumor
0.4
728
Normal
0.4
1045
Tumor
0.4
477
Tumor
0.4
918
Normal
0.4
341
Tumor
0.4
524
Normal
0.4
518
Normal
0.4
755
Tumor
0.4
647
Tumor
0.4
491
Tumor
0.4
498
Normal
0.4
497
Tumor
0.4
977
Tumor
0.4
481
Tumor
0.3
487
Tumor
0.3
494
Normal
0.3
954
Normal
0.3
471
Tumor
0.3
514
Normal
0.3
915
Tumor
0.3
171
Tumor
0.3
697
Tumor
0.3
944
Normal
0.3
492
Normal
0.3
525
Tumor
0.3
284
Normal
0.3
483
Tumor
0.3
951
Tumor
0.3
1013
Tumor
0.3
474
Normal
0.3
866
Normal
0.3
695
Tumor
0.3
924
Normal
0.3
493
Tumor
0.3
558
Normal
0.3
911
Tumor
0.3
778
Normal
0.3
227
Tumor
0.3
864
Normal
0.3
484
Normal
0.3
554
Normal
0.3
884
Normal
0.3
863
Tumor
0.3
824
Normal
0.3
984
Normal
0.3
714
Normal
0.3
1043
Tumor
0.3
861
Tumor
0.3
878
Normal
0.3
727
Tumor
0.3
361
Tumor
0.3
865
Tumor
0.3
785
Tumor
0.3
696
Normal
0.3
528
Normal
0.3
415
Tumor
0.3
416
Normal
0.3
852
Normal
0.3
981
Tumor
0.3
526
Normal
0.3
968
Normal
0.3
472
Normal
0.3
1044
Normal
0.3
538
Normal
0.3
923
Tumor
0.3
786
Normal
0.3
967
Tumor
0.2
211
Tumor
0.2
925
Tumor
0.2
1046
Normal
0.2
232
Normal
0.2
1014
Normal
0.2
867
Tumor
0.2
913
Tumor
0.2
364
Normal
0.2
957
Tumor
0.2
271
Tumor
0.2
816
Normal
0.2
952
Normal
0.2
874
Normal
0.2
868
Normal
0.2
1042
Normal
0.2
313
Tumor
0.2
131
Tumor
0.2
851
Tumor
0.2
516
Normal
0.2
145
Tumor
0.2
1016
Normal
0.2
387
Tumor
0.2
1026
Normal
0.2
482
Normal
0.2
756
Normal
0.2
746
Normal
0.2
617
Tumor
0.2
937
Tumor
0.2
912
Normal
0.2
421
Tumor
0.2
461
Tumor
0.2
365
Tumor
0.2
412
Normal
0.2
916
Normal
0.2
161
Tumor
0.2
546
Normal
0.2
958
Normal
0.2
926
Normal
0.2
536
Normal
0.2
628
Normal
0.2
451
Tumor
0.2
723
Tumor
0.2
1028
Normal
0.2
738
Normal
0.2
572
Normal
0.2
943
Tumor
0.2
212
Normal
0.2
267
Tumor
0.2
564
Normal
0.2
563
Tumor
0.2
435
Tumor
0.2
914
Normal
0.2
964
Normal
0.2
535
Tumor
0.2
742
Normal
0.2
715
Tumor
0.2
386
Normal
0.2
448
Normal
0.2
917
Tumor
0.2
537
Tumor
0.2
411
Tumor
0.1
1015
Tumor
0.1
228
Normal
0.1
858
Normal
0.1
978
Normal
0.1
396
Normal
0.1
938
Normal
0.1
534
Normal
0.1
982
Normal
0.1
1022
Normal
0.1
138
Normal
0.1
716
Normal
0.1
882
Normal
0.1
966
Normal
0.1
698
Normal
0.1
393
Tumor
0.1
641
Tumor
0.1
311
Tumor
0.1
636
Normal
0.1
285
Tumor
0.1
1032
Normal
0.1
224
Normal
0.1
488
Normal
0.1
686
Normal
0.1
462
Normal
0.1
642
Normal
0.1
258
Normal
0.1
268
Normal
0.1
328
Normal
0.1
392
Normal
0.1
976
Normal
0.1
363
Tumor
0.1
385
Tumor
0.1
975
Tumor
0.1
222
Normal
0.1
963
Tumor
0.1
956
Normal
0.1
478
Normal
0.1
665
Tumor
0.1
455
Tumor
0.1
312
Normal
0.1
262
Normal
0.1
142
Normal
0.1
662
Normal
0.1
1021
Tumor
0.1
218
Normal
0.1
188
Normal
0.1
862
Normal
0.1
443
Tumor
0.1
286
Normal
0.1
147
Tumor
0.1
357
Tumor
0.1
187
Tumor
0.1
362
Normal
0.1
297
Tumor
0.1
873
Tumor
0.1
648
Normal
0.1
427
Tumor
0.1
136
Normal
0.1
857
Tumor
0.1
221
Tumor
0.1
744
Normal
0.1
123
Tumor
0.1
353
Tumor
0.0
713
Tumor
0.0
195
Tumor
0.0
135
Tumor
0.0
434
Normal
0.0
447
Tumor
0.0
114
Normal
0.0
618
Normal
0.0
272
Normal
0.0
574
Normal
0.0
1031
Tumor
0.0
818
Normal
0.0
466
Normal
0.0
368
Normal
0.0
376
Normal
0.0
331
Tumor
0.0
568
Normal
0.0
446
Normal
0.0
445
Tumor
0.0
366
Normal
0.0
722
Normal
0.0
298
Normal
0.0
444
Normal
0.0
877
Tumor
0.0
132
Normal
0.0
721
Tumor
0.0
352
Normal
0.0
223
Tumor
0.0
355
Tumor
0.0
213
Tumor
0.0
424
Normal
0.0
384
Normal
0.0
125
Tumor
0.0
128
Normal
0.0
126
Normal
0.0
813
Tumor
0.0
616
Normal
0.0
557
Tumor
0.0
148
Normal
0.0
573
Tumor
0.0
664
Normal
0.0
671
Tumor
0.0
137
Tumor
0.0
414
Normal
0.0
192
Normal
-0.1
356
Normal
-0.1
127
Tumor
-0.1
666
Normal
-0.1
663
Tumor
-0.1
196
Normal
-0.1
214
Normal
-0.1
741
Tumor
-0.1
432
Normal
-0.1
217
Tumor
-0.1
141
Tumor
-0.1
277
Tumor
-0.1
111
Normal
-0.1
436
Normal
-0.1
881
Tumor
-0.1
283
Tumor
-0.1
567
Tumor
-0.1
814
Normal
-0.1
422
Normal
-0.1
112
Tumor
-0.1
433
Tumor
-0.1
231
Tumor
-0.1
354
Normal
-0.1
428
Normal
-0.1
465
Tumor
-0.1
344
Normal
-0.1
172
Normal
-0.1
473
Tumor
-0.1
146
Normal
-0.1
413
Tumor
-0.1
672
Normal
-0.1
343
Tumor
-0.1
358
Normal
-0.1
113
Tumor
-0.1
124
Normal
-0.1
452
Normal
-0.1
278
Normal
-0.1
342
Normal
-0.1
456
Normal
-0.2
815
Tumor
-0.2
185
Tumor
-0.2
383
Tumor
-0.2
394
Normal
-0.2
468
Normal
-0.2
375
Tumor
-0.2
426
Normal
-0.2
431
Tumor
-0.2
463
Tumor
-0.2
162
Normal
-0.2
388
Normal
-0.2
261
Tumor
-0.2
191
Tumor
-0.2
391
Tumor
-0.2
186
Normal
-0.3
983
Tumor
-0.3
367
Tumor
-0.3
965
Tumor
-0.3
332
Normal
-0.3
314
Normal
-0.3
423
Tumor
-0.3
464
Normal
-0.4
395
Tumor
-0.4
724
Normal
-0.4
351
Tumor
-0.5
571
Tumor
-0.5
467
Tumor
-0.5
661
Tumor
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
