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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
UBE2L6 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
68.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
406.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
313.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
291.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
259.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
197.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
191.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
188.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
188.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
179.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
176.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
174.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
169.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
161.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
159.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
155.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
153.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
152.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
152.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
151.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
149.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
149.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
143.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
142.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
138.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
137.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
136.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
135.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
134.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
134.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
133.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
133.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
131.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
131.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
131.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
129.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
128.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
127.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
126.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
120.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
119.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
118.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
117.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
116.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
114.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
114.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
108.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
107.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
107.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
104.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
103.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
103.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
103.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
103.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
102.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
101.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
101.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
101.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
101.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
101.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
100.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
100.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
99.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
99.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
99.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
99.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
97.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
97.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
96.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
96.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
95.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
95.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
95.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
94.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
94.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
93.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
93.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
92.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
91.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
90.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
90.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
89.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
89.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
88.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
88.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
87.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
87.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
86.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
86.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
86.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
86.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
85.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
85.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
85.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
84.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
84.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
84.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
83.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
82.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
82.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
81.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
81.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
80.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
80.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
80.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
79.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
79.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
79.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
79.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
79.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
79.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
79.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
79.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
78.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
78.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
78.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
78.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
78.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
78.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
77.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
77.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
77.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
76.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
75.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
75.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
74.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
74.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
74.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
74.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
73.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
73.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
73.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
71.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
70.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
70.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
70.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
70.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
70.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
69.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
69.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
69.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
69.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
68.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
68.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
68.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
68.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
68.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
67.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
67.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
67.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
67.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
66.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
66.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
65.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
65.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
65.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
65.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
65.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
64.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
64.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
64.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
64.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
64.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
63.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
63.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
63.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
63.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
62.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
62.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
62.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
62.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
61.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
61.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
61.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
61.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
60.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
60.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
60.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
59.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
59.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
59.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
59.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
59.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
59.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
58.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
58.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
58.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
58.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
58.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
58.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
57.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
57.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
57.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
57.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
57.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
57.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
57.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
56.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
56.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
56.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
56.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
55.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
55.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
54.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
54.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
54.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
54.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
53.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
53.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
53.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
53.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
53.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
53.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
53.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
53.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
52.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
52.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
52.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
52.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
51.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
51.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
51.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
51.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
51.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
51.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
51.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
50.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
50.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
50.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
50.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
50.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
49.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
49.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
49.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
49.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
49.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
48.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
48.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
48.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
48.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
48.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
48.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
48.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
48.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
48.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
47.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
47.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
46.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
46.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
46.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
46.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
45.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
44.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
43.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
43.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
43.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
43.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
43.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
43.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
43.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
43.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
43.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
43.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
42.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
42.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
41.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
41.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
41.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
41.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
41.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
40.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
40.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
40.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
40.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
39.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
39.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
38.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
38.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
38.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
37.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
37.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
37.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
36.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
36.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
36.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
35.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
35.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
35.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
35.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
34.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
34.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
34.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
34.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
33.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
33.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
33.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
33.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
32.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
32.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
31.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
31.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
31.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
31.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
30.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
30.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
29.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
28.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
28.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
28.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
28.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
27.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
27.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
27.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
26.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
26.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
26.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
26.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
26.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
25.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
25.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
25.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
25.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
24.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
24.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
24.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
23.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
22.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
22.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
22.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
21.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
21.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
21.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
21.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
21.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
21.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
21.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
21.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
20.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
20.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
20.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
19.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
19.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
16.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
16.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
15.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
14.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
14.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
13.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
12.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
12.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
12.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
11.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
10.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
10.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
9.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
9.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
9.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
9.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
8.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
8.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
7.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
4.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
UBE2L6 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
69.3
Number of samples
231
Samples
Sample
Description
TPM
DO50803
0 years, female, NA, stage:1, alive, 540 days
317.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
237.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
208.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
207.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
206.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
205.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
204.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
202.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
197.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
191.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
161.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
153.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
148.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
147.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
145.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
138.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
131.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
126.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
124.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
123.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
123.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
123.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
114.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
114.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
112.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
112.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
109.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
109.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
109.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
108.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
107.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
105.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
103.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
101.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
101.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
99.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
98.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
97.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
97.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
96.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
96.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
95.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
94.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
93.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
93.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
89.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
88.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
88.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
88.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
88.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
88.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
87.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
87.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
85.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
85.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
85.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
85.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
83.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
82.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
82.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
82.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
81.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
81.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
81.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
80.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
80.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
80.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
79.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
79.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
78.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
78.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
78.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
76.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
75.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
75.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
75.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
75.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
75.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
75.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
74.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
74.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
73.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
73.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
73.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
73.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
73.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
73.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
72.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
72.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
72.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
71.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
71.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
71.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
71.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
70.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
70.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
69.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
69.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
68.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
68.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
68.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
67.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
67.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
67.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
67.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
66.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
66.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
66.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
66.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
65.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
64.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
64.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
63.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
63.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
61.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
61.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
60.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
60.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
59.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
59.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
59.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
59.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
59.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
58.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
58.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
58.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
58.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
58.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
57.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
57.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
56.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
56.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
55.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
55.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
55.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
55.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
55.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
55.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
54.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
54.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
53.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
53.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
52.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
52.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
52.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
52.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
51.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
51.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
50.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
50.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
50.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
50.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
50.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
50.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
49.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
47.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
47.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
47.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
46.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
46.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
46.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
45.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
45.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
44.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
44.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
42.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
42.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
42.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
42.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
41.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
40.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
40.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
39.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
38.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
38.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
38.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
37.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
37.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
36.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
36.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
36.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
36.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
36.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
35.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
35.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
35.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
35.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
34.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
34.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
33.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
33.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
32.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
32.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
31.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
31.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
31.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
30.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
30.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
30.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
30.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
29.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
29.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
29.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
27.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
27.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
26.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
25.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
25.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
25.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
24.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
23.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
23.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
23.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
23.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
21.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
21.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
21.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
20.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
19.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
19.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
19.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
18.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
17.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
13.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
13.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
11.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
10.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
6.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
6.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
4.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
4.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
113
Tumor
2.1
262
Normal
1.1
213
Tumor
1.1
434
Normal
1.0
955
Tumor
0.9
327
Tumor
0.9
861
Tumor
0.9
467
Tumor
0.8
978
Normal
0.8
416
Normal
0.7
966
Normal
0.7
557
Tumor
0.7
865
Tumor
0.7
1015
Tumor
0.7
857
Tumor
0.7
937
Tumor
0.6
1031
Tumor
0.6
188
Normal
0.6
451
Tumor
0.6
126
Normal
0.6
914
Normal
0.6
432
Normal
0.6
661
Tumor
0.5
755
Tumor
0.5
956
Normal
0.5
1043
Tumor
0.5
446
Normal
0.5
393
Tumor
0.5
267
Tumor
0.5
195
Tumor
0.5
217
Tumor
0.4
387
Tumor
0.4
1044
Normal
0.4
917
Tumor
0.4
145
Tumor
0.4
915
Tumor
0.4
187
Tumor
0.4
396
Normal
0.4
218
Normal
0.4
386
Normal
0.4
415
Tumor
0.4
925
Tumor
0.4
444
Normal
0.3
353
Tumor
0.3
344
Normal
0.3
745
Tumor
0.3
448
Normal
0.3
147
Tumor
0.3
443
Tumor
0.3
191
Tumor
0.3
358
Normal
0.3
1046
Normal
0.3
858
Normal
0.3
514
Normal
0.3
212
Normal
0.3
286
Normal
0.3
662
Normal
0.3
272
Normal
0.3
311
Tumor
0.3
851
Tumor
0.3
686
Normal
0.3
536
Normal
0.3
214
Normal
0.3
492
Normal
0.3
724
Normal
0.3
468
Normal
0.3
926
Normal
0.3
558
Normal
0.2
366
Normal
0.2
627
Tumor
0.2
392
Normal
0.2
268
Normal
0.2
487
Tumor
0.2
814
Normal
0.2
284
Normal
0.2
114
Normal
0.2
368
Normal
0.2
383
Tumor
0.2
628
Normal
0.2
362
Normal
0.2
138
Normal
0.2
696
Normal
0.2
884
Normal
0.2
433
Tumor
0.2
111
Normal
0.2
663
Tumor
0.2
723
Tumor
0.2
524
Normal
0.2
867
Tumor
0.2
981
Tumor
0.2
452
Normal
0.2
1045
Tumor
0.2
526
Normal
0.2
391
Tumor
0.2
365
Tumor
0.2
224
Normal
0.2
617
Tumor
0.2
141
Tumor
0.2
352
Normal
0.1
232
Normal
0.1
666
Normal
0.1
698
Normal
0.1
211
Tumor
0.1
953
Tumor
0.1
384
Normal
0.1
1028
Normal
0.1
816
Normal
0.1
258
Normal
0.1
916
Normal
0.1
367
Tumor
0.1
455
Tumor
0.1
1026
Normal
0.1
913
Tumor
0.1
528
Normal
0.1
498
Normal
0.1
127
Tumor
0.1
228
Normal
0.1
261
Tumor
0.1
1042
Normal
0.1
535
Tumor
0.1
376
Normal
0.1
513
Tumor
0.1
664
Normal
0.1
756
Normal
0.1
422
Normal
0.1
727
Tumor
0.1
918
Normal
0.1
954
Normal
0.0
388
Normal
0.0
516
Normal
0.0
714
Normal
0.0
456
Normal
0.0
728
Normal
0.0
862
Normal
0.0
873
Tumor
0.0
952
Normal
0.0
332
Normal
0.0
665
Tumor
0.0
716
Normal
0.0
778
Normal
0.0
414
Normal
0.0
146
Normal
0.0
964
Normal
0.0
136
Normal
0.0
385
Tumor
0.0
648
Normal
0.0
525
Tumor
0.0
436
Normal
0.0
722
Normal
0.0
161
Tumor
0.0
172
Normal
0.0
421
Tumor
0.0
1016
Normal
0.0
493
Tumor
0.0
944
Normal
0.0
738
Normal
0.0
128
Normal
0.0
852
Normal
0.0
223
Tumor
0.0
142
Normal
0.0
395
Tumor
0.0
124
Normal
0.0
494
Normal
0.0
568
Normal
0.0
672
Normal
0.0
721
Tumor
0.0
938
Normal
0.0
196
Normal
0.0
466
Normal
0.0
982
Normal
0.0
477
Tumor
0.0
1022
Normal
-0.1
185
Tumor
-0.1
984
Normal
-0.1
314
Normal
-0.1
574
Normal
-0.1
922
Normal
-0.1
642
Normal
-0.1
715
Tumor
-0.1
221
Tumor
-0.1
534
Normal
-0.1
137
Tumor
-0.1
192
Normal
-0.1
464
Normal
-0.1
424
Normal
-0.1
312
Normal
-0.1
1014
Normal
-0.1
428
Normal
-0.1
278
Normal
-0.1
616
Normal
-0.1
283
Tumor
-0.1
636
Normal
-0.1
866
Normal
-0.1
824
Normal
-0.1
394
Normal
-0.1
777
Tumor
-0.1
148
Normal
-0.1
162
Normal
-0.1
883
Tumor
-0.1
135
Tumor
-0.1
874
Normal
-0.1
742
Normal
-0.1
572
Normal
-0.1
341
Tumor
-0.1
361
Tumor
-0.1
343
Tumor
-0.1
554
Normal
-0.1
491
Tumor
-0.2
435
Tumor
-0.2
125
Tumor
-0.2
478
Normal
-0.2
518
Normal
-0.2
864
Normal
-0.2
354
Normal
-0.2
818
Normal
-0.2
538
Normal
-0.2
912
Normal
-0.2
426
Normal
-0.2
1032
Normal
-0.2
924
Normal
-0.2
823
Tumor
-0.2
447
Tumor
-0.2
563
Tumor
-0.2
564
Normal
-0.2
222
Normal
-0.2
882
Normal
-0.2
527
Tumor
-0.2
943
Tumor
-0.2
412
Normal
-0.2
461
Tumor
-0.2
868
Normal
-0.2
863
Tumor
-0.2
298
Normal
-0.2
523
Tumor
-0.2
641
Tumor
-0.2
685
Tumor
-0.2
786
Normal
-0.2
546
Normal
-0.2
356
Normal
-0.2
375
Tumor
-0.2
482
Normal
-0.2
364
Normal
-0.2
427
Tumor
-0.2
911
Tumor
-0.2
573
Tumor
-0.2
976
Normal
-0.2
488
Normal
-0.2
462
Normal
-0.2
878
Normal
-0.3
471
Tumor
-0.3
413
Tumor
-0.3
474
Normal
-0.3
963
Tumor
-0.3
342
Normal
-0.3
967
Tumor
-0.3
313
Tumor
-0.3
958
Normal
-0.3
297
Tumor
-0.3
186
Normal
-0.3
744
Normal
-0.3
695
Tumor
-0.3
615
Tumor
-0.3
813
Tumor
-0.3
977
Tumor
-0.3
271
Tumor
-0.3
277
Tumor
-0.3
968
Normal
-0.3
257
Tumor
-0.3
533
Tumor
-0.3
497
Tumor
-0.3
465
Tumor
-0.3
746
Normal
-0.3
423
Tumor
-0.3
123
Tumor
-0.4
618
Normal
-0.4
484
Normal
-0.4
647
Tumor
-0.4
975
Tumor
-0.4
357
Tumor
-0.4
881
Tumor
-0.4
132
Normal
-0.5
328
Normal
-0.5
463
Tumor
-0.5
411
Tumor
-0.5
1041
Tumor
-0.5
737
Tumor
-0.5
553
Tumor
-0.5
285
Tumor
-0.5
472
Normal
-0.5
112
Tumor
-0.5
957
Tumor
-0.5
517
Tumor
-0.5
515
Tumor
-0.5
537
Tumor
-0.5
951
Tumor
-0.5
355
Tumor
-0.5
741
Tumor
-0.6
1027
Tumor
-0.6
481
Tumor
-0.6
635
Tumor
-0.6
227
Tumor
-0.6
431
Tumor
-0.6
1013
Tumor
-0.6
445
Tumor
-0.6
567
Tumor
-0.7
923
Tumor
-0.7
231
Tumor
-0.7
697
Tumor
-0.7
713
Tumor
-0.7
983
Tumor
-0.7
425
Tumor
-0.8
965
Tumor
-0.8
1021
Tumor
-0.8
171
Tumor
-0.8
815
Tumor
-0.8
785
Tumor
-0.8
363
Tumor
-0.9
921
Tumor
-0.9
331
Tumor
-0.9
483
Tumor
-0.9
351
Tumor
-0.9
545
Tumor
-0.9
1025
Tumor
-0.9
817
Tumor
-0.9
671
Tumor
-1.0
877
Tumor
-1.0
571
Tumor
-1.4
131
Tumor
-1.6
473
Tumor
-1.9
743
Tumor
-2.2
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
