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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PHF6 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
3.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
14.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
13.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
13.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
12.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
11.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
11.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
11.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
11.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
9.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
9.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
9.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
9.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
9.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
9.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
9.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
8.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
8.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
8.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
8.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
8.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
8.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
7.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
7.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
7.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
7.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
7.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
7.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
7.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
7.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
7.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
7.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
7.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
6.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
6.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
6.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
6.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
6.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
6.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
5.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
5.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
5.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
5.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
5.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
5.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
5.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
5.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
5.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
5.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
5.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
5.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
5.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
5.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
5.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
5.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
5.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
5.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
5.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
5.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
5.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
5.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
5.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
5.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
4.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
4.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
4.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
4.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
4.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
4.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
4.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
4.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
4.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
4.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
4.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
4.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
4.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
4.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
4.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
4.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
4.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
4.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
4.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
4.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
4.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
4.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
4.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
4.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
4.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
4.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
4.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
4.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
4.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
4.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
4.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
4.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
4.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
4.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
3.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
3.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
3.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
3.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
3.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
3.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
3.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
3.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
3.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
3.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
3.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
3.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
3.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
3.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
3.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
3.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
3.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
3.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
3.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
3.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
3.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
3.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
3.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
3.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
3.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
3.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
3.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
3.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
3.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
3.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
3.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
3.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
3.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
3.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
3.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
3.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
3.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
3.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
3.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
3.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
3.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
3.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
3.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
3.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
3.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
3.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
3.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
3.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
3.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
3.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
3.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
3.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
3.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
3.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
3.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
3.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
3.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
3.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
3.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
3.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
3.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
3.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
3.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
3.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
3.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
3.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
3.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
3.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
3.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
3.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
3.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
3.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
2.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
2.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
2.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
2.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
2.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
2.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
2.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
2.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
2.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
2.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
2.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
2.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
2.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
2.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
2.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
2.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
2.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
2.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
2.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
2.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
2.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
2.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
2.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
2.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
2.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
2.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
2.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
2.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
2.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
2.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
2.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
2.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
2.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
2.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
2.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
2.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
2.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
2.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
2.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
2.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
2.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
2.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
2.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
2.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
2.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
2.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
2.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
2.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
2.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
2.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
2.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
2.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
2.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
2.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
2.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
2.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
2.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
2.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
2.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
2.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
2.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
2.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
2.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
2.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
2.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
2.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
2.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
2.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
2.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
2.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
2.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
2.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
2.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
1.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
1.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
1.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
1.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
1.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
1.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
1.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
1.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
1.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
1.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
1.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
1.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
1.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
1.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
1.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
1.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
1.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
1.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
1.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
1.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
1.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
1.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
1.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
1.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
1.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
1.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
1.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
1.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
1.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
1.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
1.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
1.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
1.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
1.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
1.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
1.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
1.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
1.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
1.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
1.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
1.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
1.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
1.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
1.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
1.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
1.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
1.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
1.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
1.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
1.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
1.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
1.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
1.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
1.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
1.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
1.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
1.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
1.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
1.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
1.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
0.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PHF6 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.1
Number of samples
231
Samples
Sample
Description
TPM
DO45297
0 years, female, NA, stage:4, dead, 1260 days
18.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
16.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
14.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
13.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
13.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
12.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
12.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
12.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
12.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
11.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
11.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
10.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
10.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
10.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
10.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
9.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
9.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
9.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
9.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
9.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
8.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
8.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
8.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
8.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
8.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
8.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
8.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
8.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
7.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
7.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
7.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
7.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
7.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
7.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
7.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
7.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
7.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
7.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
7.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
7.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
7.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
7.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
7.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
6.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
6.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
6.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
6.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
6.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
6.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
6.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
6.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
6.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
6.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
6.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
6.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
6.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
6.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
6.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
6.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
6.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
6.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
6.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
5.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
5.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
5.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
5.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
5.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
5.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
5.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
5.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
5.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
5.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
5.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
5.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
5.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
5.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
5.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
5.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
5.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
5.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
5.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
5.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
5.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
5.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
5.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
5.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
5.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
5.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
5.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
5.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
5.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
5.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
5.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
5.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
5.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
5.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
5.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
5.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
5.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
4.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
4.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
4.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
4.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
4.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
4.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
4.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
4.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
4.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
4.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
4.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
4.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
4.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
4.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
4.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
4.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
4.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
4.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
4.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
4.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
4.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
4.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
4.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
4.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
4.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
4.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
4.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
4.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
4.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
4.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
4.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
4.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
4.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
4.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
4.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
4.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
4.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
4.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
4.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
4.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
4.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
4.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
3.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
3.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
3.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
3.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
3.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
3.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
3.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
3.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
3.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
3.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
3.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
3.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
3.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
3.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
3.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
3.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
3.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
3.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
3.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
3.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
3.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
3.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
3.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
3.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
3.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
3.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
3.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
3.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
3.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
3.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
3.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
3.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
3.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
3.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
3.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
3.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
3.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
3.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
3.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
3.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
3.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
3.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
3.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
3.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
3.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
3.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
3.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
3.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
3.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
3.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
2.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
2.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
2.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
2.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
2.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
2.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
2.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
2.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
2.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
2.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
2.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
2.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
2.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
2.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
2.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
2.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
2.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
2.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
2.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
2.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
2.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
2.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
2.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
2.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
2.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
2.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
2.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
2.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
1.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
1.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
1.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
1.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
1.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
1.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
1.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
1.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
1.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
1.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
1.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
965
Tumor
2.0
331
Tumor
1.5
473
Tumor
1.5
497
Tumor
1.4
367
Tumor
1.4
1013
Tumor
1.3
313
Tumor
1.3
351
Tumor
1.3
527
Tumor
1.3
685
Tumor
1.2
487
Tumor
1.1
665
Tumor
1.1
211
Tumor
1.1
661
Tumor
1.0
425
Tumor
1.0
383
Tumor
0.9
545
Tumor
0.9
983
Tumor
0.8
951
Tumor
0.8
647
Tumor
0.8
537
Tumor
0.8
171
Tumor
0.8
745
Tumor
0.8
857
Tumor
0.7
283
Tumor
0.7
261
Tumor
0.7
865
Tumor
0.7
977
Tumor
0.7
355
Tumor
0.7
375
Tumor
0.7
957
Tumor
0.6
427
Tumor
0.6
523
Tumor
0.6
953
Tumor
0.6
112
Tumor
0.6
161
Tumor
0.6
535
Tumor
0.6
411
Tumor
0.6
491
Tumor
0.6
861
Tumor
0.5
663
Tumor
0.5
1021
Tumor
0.5
267
Tumor
0.5
391
Tumor
0.5
137
Tumor
0.5
913
Tumor
0.5
785
Tumor
0.5
943
Tumor
0.5
777
Tumor
0.5
557
Tumor
0.5
737
Tumor
0.5
567
Tumor
0.5
815
Tumor
0.5
357
Tumor
0.5
257
Tumor
0.5
451
Tumor
0.4
433
Tumor
0.4
863
Tumor
0.4
343
Tumor
0.4
483
Tumor
0.4
671
Tumor
0.4
695
Tumor
0.4
883
Tumor
0.4
467
Tumor
0.4
697
Tumor
0.4
635
Tumor
0.4
724
Normal
0.4
921
Tumor
0.4
525
Tumor
0.4
477
Tumor
0.4
431
Tumor
0.4
873
Tumor
0.4
463
Tumor
0.3
131
Tumor
0.3
285
Tumor
0.3
341
Tumor
0.3
387
Tumor
0.3
277
Tumor
0.3
881
Tumor
0.3
385
Tumor
0.3
123
Tumor
0.3
465
Tumor
0.3
217
Tumor
0.3
447
Tumor
0.3
817
Tumor
0.3
627
Tumor
0.3
851
Tumor
0.3
1041
Tumor
0.3
471
Tumor
0.3
125
Tumor
0.3
923
Tumor
0.3
823
Tumor
0.2
533
Tumor
0.2
727
Tumor
0.2
415
Tumor
0.2
113
Tumor
0.2
741
Tumor
0.2
743
Tumor
0.2
967
Tumor
0.2
925
Tumor
0.2
911
Tumor
0.2
493
Tumor
0.2
413
Tumor
0.2
127
Tumor
0.2
227
Tumor
0.2
185
Tumor
0.2
937
Tumor
0.2
135
Tumor
0.2
721
Tumor
0.2
963
Tumor
0.2
513
Tumor
0.2
187
Tumor
0.2
1015
Tumor
0.2
311
Tumor
0.1
231
Tumor
0.1
327
Tumor
0.1
141
Tumor
0.1
1027
Tumor
0.1
975
Tumor
0.1
515
Tumor
0.1
455
Tumor
0.1
461
Tumor
0.1
814
Normal
0.1
1043
Tumor
0.1
213
Tumor
0.0
297
Tumor
0.0
232
Normal
0.0
877
Tumor
0.0
191
Tumor
0.0
538
Normal
0.0
536
Normal
0.0
672
Normal
0.0
917
Tumor
0.0
1031
Tumor
0.0
648
Normal
0.0
262
Normal
0.0
981
Tumor
0.0
268
Normal
0.0
271
Tumor
0.0
554
Normal
0.0
221
Tumor
0.0
395
Tumor
0.0
435
Tumor
-0.1
524
Normal
-0.1
272
Normal
-0.1
492
Normal
-0.1
966
Normal
-0.1
1045
Tumor
-0.1
666
Normal
-0.1
662
Normal
-0.1
423
Tumor
-0.1
1028
Normal
-0.1
571
Tumor
-0.1
982
Normal
-0.1
818
Normal
-0.1
478
Normal
-0.1
968
Normal
-0.1
664
Normal
-0.1
147
Tumor
-0.1
445
Tumor
-0.1
617
Tumor
-0.1
867
Tumor
-0.1
824
Normal
-0.1
365
Tumor
-0.1
915
Tumor
-0.1
223
Tumor
-0.1
852
Normal
-0.1
756
Normal
-0.1
481
Tumor
-0.1
258
Normal
-0.1
813
Tumor
-0.1
553
Tumor
-0.1
192
Normal
-0.2
958
Normal
-0.2
393
Tumor
-0.2
573
Tumor
-0.2
1025
Tumor
-0.2
715
Tumor
-0.2
952
Normal
-0.2
443
Tumor
-0.2
126
Normal
-0.2
212
Normal
-0.2
1032
Normal
-0.2
195
Tumor
-0.2
361
Tumor
-0.2
1026
Normal
-0.2
353
Tumor
-0.2
858
Normal
-0.2
474
Normal
-0.2
976
Normal
-0.2
384
Normal
-0.2
964
Normal
-0.2
1022
Normal
-0.2
698
Normal
-0.2
142
Normal
-0.2
518
Normal
-0.2
482
Normal
-0.2
1044
Normal
-0.2
312
Normal
-0.2
816
Normal
-0.2
298
Normal
-0.2
1014
Normal
-0.2
286
Normal
-0.3
412
Normal
-0.3
755
Tumor
-0.3
713
Tumor
-0.3
744
Normal
-0.3
728
Normal
-0.3
146
Normal
-0.3
278
Normal
-0.3
922
Normal
-0.3
363
Tumor
-0.3
1046
Normal
-0.3
866
Normal
-0.3
517
Tumor
-0.3
284
Normal
-0.3
332
Normal
-0.3
642
Normal
-0.3
615
Tumor
-0.3
955
Tumor
-0.3
918
Normal
-0.3
434
Normal
-0.3
224
Normal
-0.3
376
Normal
-0.3
111
Normal
-0.3
882
Normal
-0.3
884
Normal
-0.3
912
Normal
-0.3
124
Normal
-0.3
1016
Normal
-0.3
528
Normal
-0.3
362
Normal
-0.3
984
Normal
-0.3
421
Tumor
-0.3
188
Normal
-0.3
546
Normal
-0.3
874
Normal
-0.3
352
Normal
-0.3
628
Normal
-0.3
228
Normal
-0.3
956
Normal
-0.3
746
Normal
-0.3
366
Normal
-0.3
954
Normal
-0.3
534
Normal
-0.4
916
Normal
-0.4
878
Normal
-0.4
778
Normal
-0.4
938
Normal
-0.4
924
Normal
-0.4
862
Normal
-0.4
563
Tumor
-0.4
416
Normal
-0.4
358
Normal
-0.4
364
Normal
-0.4
868
Normal
-0.4
136
Normal
-0.4
328
Normal
-0.4
218
Normal
-0.4
944
Normal
-0.4
138
Normal
-0.4
114
Normal
-0.4
786
Normal
-0.4
526
Normal
-0.4
448
Normal
-0.4
128
Normal
-0.4
978
Normal
-0.4
686
Normal
-0.4
716
Normal
-0.4
516
Normal
-0.4
368
Normal
-0.4
498
Normal
-0.4
484
Normal
-0.4
696
Normal
-0.4
714
Normal
-0.4
344
Normal
-0.4
494
Normal
-0.4
428
Normal
-0.4
462
Normal
-0.4
172
Normal
-0.5
464
Normal
-0.5
864
Normal
-0.5
472
Normal
-0.5
145
Tumor
-0.5
738
Normal
-0.5
1042
Normal
-0.5
926
Normal
-0.5
914
Normal
-0.5
148
Normal
-0.5
386
Normal
-0.5
742
Normal
-0.5
162
Normal
-0.5
436
Normal
-0.5
558
Normal
-0.5
456
Normal
-0.5
354
Normal
-0.5
444
Normal
-0.5
466
Normal
-0.5
196
Normal
-0.5
186
Normal
-0.6
314
Normal
-0.6
618
Normal
-0.6
446
Normal
-0.6
723
Tumor
-0.6
488
Normal
-0.6
396
Normal
-0.6
641
Tumor
-0.6
514
Normal
-0.6
452
Normal
-0.6
356
Normal
-0.6
432
Normal
-0.7
392
Normal
-0.7
722
Normal
-0.7
468
Normal
-0.7
426
Normal
-0.7
636
Normal
-0.7
572
Normal
-0.7
214
Normal
-0.7
342
Normal
-0.7
132
Normal
-0.7
222
Normal
-0.7
424
Normal
-0.7
574
Normal
-0.7
388
Normal
-0.8
422
Normal
-0.8
394
Normal
-0.8
564
Normal
-0.9
414
Normal
-0.9
616
Normal
-0.9
568
Normal
-0.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
