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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CCT8 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
65.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
199.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
182.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
178.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
174.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
173.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
173.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
172.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
165.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
163.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
160.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
159.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
148.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
143.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
142.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
139.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
139.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
137.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
135.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
135.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
134.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
133.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
129.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
127.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
116.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
115.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
114.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
114.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
113.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
113.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
112.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
111.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
111.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
107.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
107.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
106.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
105.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
105.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
104.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
103.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
102.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
101.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
100.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
100.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
100.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
100.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
99.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
97.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
96.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
96.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
96.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
95.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
95.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
95.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
92.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
92.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
92.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
91.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
91.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
91.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
90.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
89.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
89.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
88.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
88.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
88.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
87.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
87.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
86.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
86.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
86.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
85.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
85.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
84.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
84.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
83.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
83.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
82.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
82.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
82.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
82.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
82.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
81.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
81.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
81.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
81.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
80.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
80.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
80.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
79.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
79.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
79.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
78.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
78.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
78.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
77.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
77.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
77.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
77.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
77.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
76.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
76.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
76.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
76.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
76.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
76.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
76.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
74.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
74.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
73.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
73.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
73.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
73.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
73.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
73.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
72.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
72.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
72.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
72.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
72.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
72.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
72.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
72.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
72.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
72.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
71.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
71.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
71.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
71.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
71.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
70.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
70.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
70.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
69.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
69.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
69.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
68.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
68.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
68.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
68.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
68.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
68.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
67.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
67.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
67.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
66.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
66.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
66.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
66.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
65.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
65.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
65.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
64.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
64.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
64.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
64.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
64.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
63.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
63.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
63.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
63.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
63.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
62.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
62.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
62.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
62.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
61.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
61.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
61.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
61.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
61.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
61.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
61.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
61.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
60.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
60.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
60.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
60.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
60.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
59.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
59.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
59.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
59.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
59.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
59.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
58.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
58.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
58.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
58.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
58.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
58.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
58.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
58.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
57.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
57.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
57.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
57.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
57.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
57.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
57.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
56.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
56.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
56.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
56.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
56.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
56.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
56.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
56.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
56.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
56.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
55.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
55.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
55.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
55.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
55.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
55.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
54.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
54.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
54.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
54.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
54.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
54.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
53.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
53.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
52.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
52.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
52.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
52.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
52.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
52.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
52.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
51.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
51.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
51.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
51.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
50.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
50.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
50.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
50.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
50.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
50.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
50.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
50.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
50.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
50.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
50.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
50.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
49.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
49.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
49.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
49.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
49.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
49.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
49.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
49.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
48.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
48.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
48.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
48.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
47.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
47.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
47.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
47.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
46.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
46.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
46.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
46.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
46.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
46.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
46.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
46.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
45.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
45.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
45.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
45.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
45.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
45.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
45.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
44.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
44.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
43.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
43.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
43.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
43.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
42.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
42.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
41.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
41.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
41.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
40.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
40.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
40.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
39.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
39.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
39.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
39.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
38.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
38.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
38.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
38.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
37.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
37.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
37.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
37.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
37.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
37.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
37.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
37.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
37.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
36.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
35.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
35.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
35.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
35.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
35.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
35.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
35.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
34.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
34.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
34.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
34.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
33.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
33.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
33.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
32.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
32.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
31.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
31.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
30.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
30.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
30.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
30.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
30.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
30.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
29.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
29.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
29.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
29.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
27.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
26.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
26.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
26.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
24.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
24.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
24.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
24.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
24.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
24.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
24.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
24.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
23.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
21.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
17.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
17.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
16.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
15.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
14.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
14.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
14.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
12.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
5.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
4.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CCT8 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
74.7
Number of samples
231
Samples
Sample
Description
TPM
DO23509
0 years, male, NA, stage:3, dead, 780 days
181.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
157.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
154.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
153.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
151.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
143.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
141.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
139.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
139.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
136.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
134.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
133.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
131.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
131.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
131.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
130.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
129.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
128.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
126.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
125.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
119.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
118.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
115.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
114.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
112.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
110.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
109.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
108.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
107.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
107.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
107.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
106.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
106.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
105.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
103.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
102.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
102.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
101.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
101.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
101.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
101.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
101.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
100.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
99.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
99.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
98.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
97.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
95.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
95.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
95.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
94.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
94.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
92.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
91.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
91.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
91.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
90.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
89.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
89.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
89.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
89.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
88.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
88.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
86.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
86.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
86.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
85.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
85.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
84.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
84.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
84.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
84.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
83.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
83.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
83.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
83.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
82.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
82.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
82.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
81.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
80.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
80.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
79.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
79.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
79.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
79.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
79.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
78.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
78.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
77.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
77.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
77.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
77.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
77.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
76.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
76.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
76.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
76.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
76.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
75.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
75.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
75.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
75.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
75.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
74.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
72.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
71.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
71.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
71.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
71.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
70.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
70.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
70.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
69.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
69.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
69.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
69.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
68.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
67.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
67.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
67.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
67.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
67.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
66.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
66.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
66.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
66.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
66.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
66.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
65.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
65.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
65.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
65.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
65.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
64.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
64.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
63.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
62.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
62.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
62.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
62.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
62.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
61.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
61.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
60.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
60.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
59.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
59.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
59.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
59.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
58.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
58.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
57.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
57.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
57.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
57.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
57.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
56.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
56.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
55.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
55.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
55.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
55.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
55.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
54.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
54.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
54.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
54.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
54.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
54.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
53.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
53.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
53.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
53.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
52.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
52.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
51.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
51.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
51.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
51.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
51.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
51.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
51.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
50.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
50.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
50.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
49.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
49.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
48.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
48.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
48.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
48.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
48.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
47.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
47.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
47.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
47.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
47.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
46.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
46.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
46.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
46.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
46.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
45.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
45.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
44.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
43.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
43.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
43.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
43.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
42.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
41.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
40.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
40.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
39.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
39.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
39.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
37.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
37.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
37.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
36.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
36.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
35.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
35.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
33.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
32.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
31.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
30.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
29.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
29.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
21.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
131
Tumor
0.9
1013
Tumor
0.9
537
Tumor
0.8
815
Tumor
0.7
965
Tumor
0.7
1021
Tumor
0.6
951
Tumor
0.6
983
Tumor
0.6
1043
Tumor
0.5
1031
Tumor
0.5
527
Tumor
0.5
567
Tumor
0.5
147
Tumor
0.5
617
Tumor
0.5
285
Tumor
0.5
957
Tumor
0.5
473
Tumor
0.5
743
Tumor
0.5
865
Tumor
0.5
967
Tumor
0.4
553
Tumor
0.4
737
Tumor
0.4
471
Tumor
0.4
745
Tumor
0.4
227
Tumor
0.4
661
Tumor
0.4
921
Tumor
0.4
923
Tumor
0.3
952
Normal
0.3
425
Tumor
0.3
697
Tumor
0.3
477
Tumor
0.3
515
Tumor
0.3
685
Tumor
0.3
331
Tumor
0.3
1026
Normal
0.3
695
Tumor
0.3
391
Tumor
0.3
663
Tumor
0.3
944
Normal
0.3
1022
Normal
0.3
818
Normal
0.3
211
Tumor
0.3
746
Normal
0.3
727
Tumor
0.3
484
Normal
0.2
363
Tumor
0.2
966
Normal
0.2
915
Tumor
0.2
755
Tumor
0.2
824
Normal
0.2
448
Normal
0.2
955
Tumor
0.2
351
Tumor
0.2
728
Normal
0.2
491
Tumor
0.2
328
Normal
0.2
367
Tumor
0.2
924
Normal
0.2
873
Tumor
0.2
964
Normal
0.2
813
Tumor
0.2
981
Tumor
0.2
546
Normal
0.2
714
Normal
0.2
723
Tumor
0.2
525
Tumor
0.2
123
Tumor
0.2
1046
Normal
0.2
862
Normal
0.2
212
Normal
0.2
436
Normal
0.2
327
Tumor
0.2
738
Normal
0.2
982
Normal
0.2
722
Normal
0.2
482
Normal
0.2
472
Normal
0.2
956
Normal
0.2
816
Normal
0.2
858
Normal
0.2
528
Normal
0.2
483
Tumor
0.1
517
Tumor
0.1
918
Normal
0.1
1032
Normal
0.1
364
Normal
0.1
756
Normal
0.1
415
Tumor
0.1
916
Normal
0.1
926
Normal
0.1
228
Normal
0.1
922
Normal
0.1
494
Normal
0.1
1014
Normal
0.1
523
Tumor
0.1
416
Normal
0.1
911
Tumor
0.1
1044
Normal
0.1
534
Normal
0.1
938
Normal
0.1
852
Normal
0.1
286
Normal
0.1
573
Tumor
0.1
635
Tumor
0.1
1027
Tumor
0.1
1045
Tumor
0.1
698
Normal
0.1
1042
Normal
0.1
488
Normal
0.1
474
Normal
0.1
113
Tumor
0.1
516
Normal
0.1
411
Tumor
0.1
1015
Tumor
0.1
571
Tumor
0.1
953
Tumor
0.1
221
Tumor
0.1
616
Normal
0.1
533
Tumor
0.1
696
Normal
0.1
863
Tumor
0.1
518
Normal
0.1
978
Normal
0.1
342
Normal
0.1
554
Normal
0.1
912
Normal
0.1
443
Tumor
0.1
412
Normal
0.1
284
Normal
0.1
514
Normal
0.1
866
Normal
0.1
558
Normal
0.1
1028
Normal
0.1
778
Normal
0.1
466
Normal
0.1
647
Tumor
0.1
224
Normal
0.1
786
Normal
0.1
283
Tumor
0.1
817
Tumor
0.1
128
Normal
0.1
445
Tumor
0.1
742
Normal
0.1
431
Tumor
0.1
627
Tumor
0.1
463
Tumor
0.1
137
Tumor
0.0
487
Tumor
0.0
958
Normal
0.0
356
Normal
0.0
686
Normal
0.0
353
Tumor
0.0
186
Normal
0.0
968
Normal
0.0
977
Tumor
0.0
864
Normal
0.0
975
Tumor
0.0
536
Normal
0.0
716
Normal
0.0
478
Normal
0.0
456
Normal
0.0
861
Tumor
0.0
492
Normal
0.0
231
Tumor
0.0
125
Tumor
0.0
298
Normal
0.0
223
Tumor
0.0
976
Normal
0.0
874
Normal
0.0
526
Normal
0.0
358
Normal
0.0
141
Tumor
0.0
741
Tumor
0.0
925
Tumor
0.0
641
Tumor
0.0
883
Tumor
0.0
618
Normal
0.0
884
Normal
0.0
142
Normal
0.0
395
Tumor
0.0
882
Normal
0.0
1016
Normal
0.0
314
Normal
0.0
162
Normal
0.0
877
Tumor
0.0
355
Tumor
0.0
414
Normal
0.0
1025
Tumor
0.0
312
Normal
0.0
136
Normal
0.0
524
Normal
0.0
867
Tumor
0.0
432
Normal
0.0
715
Tumor
0.0
648
Normal
0.0
868
Normal
0.0
493
Tumor
0.0
452
Normal
0.0
366
Normal
0.0
132
Normal
0.0
386
Normal
0.0
354
Normal
0.0
943
Tumor
0.0
963
Tumor
0.0
564
Normal
0.0
447
Tumor
0.0
777
Tumor
-0.1
262
Normal
-0.1
954
Normal
-0.1
465
Tumor
-0.1
785
Tumor
-0.1
572
Normal
-0.1
462
Normal
-0.1
261
Tumor
-0.1
376
Normal
-0.1
984
Normal
-0.1
218
Normal
-0.1
535
Tumor
-0.1
636
Normal
-0.1
426
Normal
-0.1
148
Normal
-0.1
513
Tumor
-0.1
538
Normal
-0.1
423
Tumor
-0.1
362
Normal
-0.1
344
Normal
-0.1
468
Normal
-0.1
172
Normal
-0.1
232
Normal
-0.1
878
Normal
-0.1
666
Normal
-0.1
111
Normal
-0.1
724
Normal
-0.1
278
Normal
-0.1
568
Normal
-0.1
394
Normal
-0.1
127
Tumor
-0.1
628
Normal
-0.1
455
Tumor
-0.1
311
Tumor
-0.1
222
Normal
-0.1
464
Normal
-0.1
642
Normal
-0.1
881
Tumor
-0.1
563
Tumor
-0.1
272
Normal
-0.1
914
Normal
-0.1
313
Tumor
-0.1
258
Normal
-0.1
187
Tumor
-0.1
665
Tumor
-0.1
662
Normal
-0.1
146
Normal
-0.1
664
Normal
-0.1
385
Tumor
-0.1
217
Tumor
-0.1
422
Normal
-0.1
188
Normal
-0.1
138
Normal
-0.1
196
Normal
-0.1
361
Tumor
-0.1
498
Normal
-0.1
357
Tumor
-0.1
814
Normal
-0.1
332
Normal
-0.1
368
Normal
-0.1
497
Tumor
-0.1
424
Normal
-0.1
428
Normal
-0.1
574
Normal
-0.1
214
Normal
-0.1
851
Tumor
-0.1
917
Tumor
-0.1
823
Tumor
-0.1
388
Normal
-0.2
713
Tumor
-0.2
185
Tumor
-0.2
446
Normal
-0.2
352
Normal
-0.2
396
Normal
-0.2
365
Tumor
-0.2
744
Normal
-0.2
671
Tumor
-0.2
615
Tumor
-0.2
545
Tumor
-0.2
857
Tumor
-0.2
271
Tumor
-0.2
392
Normal
-0.2
112
Tumor
-0.2
433
Tumor
-0.2
434
Normal
-0.2
384
Normal
-0.2
387
Tumor
-0.2
124
Normal
-0.2
375
Tumor
-0.2
126
Normal
-0.2
297
Tumor
-0.2
114
Normal
-0.2
421
Tumor
-0.2
268
Normal
-0.2
1041
Tumor
-0.3
277
Tumor
-0.3
451
Tumor
-0.3
257
Tumor
-0.3
171
Tumor
-0.3
413
Tumor
-0.3
393
Tumor
-0.3
721
Tumor
-0.3
481
Tumor
-0.3
161
Tumor
-0.3
267
Tumor
-0.3
672
Normal
-0.3
192
Normal
-0.3
213
Tumor
-0.3
461
Tumor
-0.3
557
Tumor
-0.3
435
Tumor
-0.3
191
Tumor
-0.3
444
Normal
-0.3
195
Tumor
-0.3
145
Tumor
-0.3
427
Tumor
-0.3
341
Tumor
-0.4
343
Tumor
-0.4
383
Tumor
-0.4
937
Tumor
-0.4
913
Tumor
-0.4
467
Tumor
-0.5
135
Tumor
-0.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
