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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DPY19L4 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
16.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
15.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
14.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
14.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
14.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
13.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
13.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
12.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
12.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
12.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
12.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
12.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
11.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
11.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
11.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
11.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
11.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
11.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
11.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
11.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
11.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
11.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
10.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
10.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
10.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
10.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
10.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
10.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
10.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
10.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
10.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
10.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
10.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
10.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
10.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
9.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
9.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
9.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
9.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
9.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
9.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
9.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
9.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
9.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
9.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
9.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
8.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
8.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
8.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
8.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
8.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
8.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
8.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
8.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
8.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
8.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
8.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
8.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
8.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
8.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
8.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
8.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
8.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
8.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
7.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
7.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
7.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
7.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
7.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
7.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
7.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
7.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
7.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
7.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
7.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
7.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
7.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
7.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
7.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
7.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
7.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
7.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
7.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
7.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
6.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
6.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
6.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
6.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
6.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
6.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
6.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
6.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
6.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
6.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
6.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
6.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
6.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
6.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
6.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
6.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
6.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
6.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
6.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
6.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
6.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
6.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
6.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
6.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
6.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
6.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
6.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
6.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
6.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
6.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
6.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
6.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
6.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
5.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
5.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
5.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
5.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
5.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
5.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
5.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
5.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
5.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
5.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
5.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
5.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
5.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
5.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
5.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
5.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
5.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
5.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
5.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
5.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
5.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
5.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
5.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
5.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
5.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
5.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
5.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
5.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
5.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
5.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
5.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
5.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
5.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
5.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
5.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
5.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
5.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
5.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
5.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
5.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
5.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
5.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
5.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
5.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
5.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
5.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
5.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
5.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
5.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
5.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
5.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
5.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
5.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
5.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
5.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
5.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
5.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
4.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
4.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
4.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
4.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
4.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
4.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
4.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
4.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
4.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
4.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
4.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
4.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
4.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
4.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
4.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
4.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
4.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
4.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
4.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
4.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
4.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
4.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
4.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
4.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
4.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
4.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
4.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
4.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
4.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
4.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
4.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
4.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
4.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
4.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
4.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
4.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
4.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
4.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
4.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
4.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
4.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
3.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
3.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
3.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
3.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
3.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
3.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
3.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
3.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
3.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
3.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
3.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
3.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
3.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
3.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
3.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
3.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
3.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
3.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
3.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
3.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
3.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
3.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
3.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
3.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
3.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
3.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
3.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
3.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
3.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
3.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
3.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
3.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
3.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
3.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
3.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
3.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
3.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
3.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
3.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
3.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
3.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
2.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
2.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
2.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
2.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
2.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
2.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
2.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
2.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
2.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
2.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
2.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
2.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
2.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
2.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
2.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
2.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
2.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
2.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
2.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
2.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
2.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
2.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
2.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
2.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
2.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
2.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
2.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
2.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
2.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
1.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
1.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
1.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
1.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
1.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
1.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
1.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
1.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
1.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
1.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DPY19L4 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.6
Number of samples
231
Samples
Sample
Description
TPM
DO45279
0 years, male, NA, stage:3, alive, 1290 days
19.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
17.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
17.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
15.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
15.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
14.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
14.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
14.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
14.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
13.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
13.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
13.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
12.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
12.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
12.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
11.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
11.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
11.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
11.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
11.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
11.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
11.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
11.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
11.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
10.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
10.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
10.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
10.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
10.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
10.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
10.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
10.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
10.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
9.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
9.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
9.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
9.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
9.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
9.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
9.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
9.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
9.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
9.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
9.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
9.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
9.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
9.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
9.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
8.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
8.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
8.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
8.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
8.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
8.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
8.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
8.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
8.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
8.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
8.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
8.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
8.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
8.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
8.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
8.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
8.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
8.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
8.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
8.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
8.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
8.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
7.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
7.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
7.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
7.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
7.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
7.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
7.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
7.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
7.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
7.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
7.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
7.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
7.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
7.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
7.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
7.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
7.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
7.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
7.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
7.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
6.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
6.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
6.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
6.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
6.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
6.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
6.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
6.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
6.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
6.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
6.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
6.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
6.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
6.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
6.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
6.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
6.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
6.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
6.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
6.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
6.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
6.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
6.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
5.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
5.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
5.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
5.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
5.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
5.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
5.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
5.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
5.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
5.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
5.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
5.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
5.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
5.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
5.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
5.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
5.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
5.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
5.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
5.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
5.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
5.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
5.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
5.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
5.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
5.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
5.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
5.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
5.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
5.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
5.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
5.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
5.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
5.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
5.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
5.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
4.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
4.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
4.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
4.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
4.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
4.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
4.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
4.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
4.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
4.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
4.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
4.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
4.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
4.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
4.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
4.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
4.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
4.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
4.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
4.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
4.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
4.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
4.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
4.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
4.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
4.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
4.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
4.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
3.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
3.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
3.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
3.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
3.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
3.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
3.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
3.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
3.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
3.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
3.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
3.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
3.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
3.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
3.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
3.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
3.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
3.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
3.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
3.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
3.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
3.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
3.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
3.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
3.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
3.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
3.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
3.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
3.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
3.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
3.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
2.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
2.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
2.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
2.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
2.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
2.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
2.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
2.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
2.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
2.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
2.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
2.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
2.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
2.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
2.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
2.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
1.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
1.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
1.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
445
Tumor
1.5
331
Tumor
0.8
267
Tumor
0.8
557
Tumor
0.8
641
Tumor
0.8
571
Tumor
0.7
951
Tumor
0.6
277
Tumor
0.6
915
Tumor
0.6
483
Tumor
0.6
963
Tumor
0.6
937
Tumor
0.5
873
Tumor
0.5
568
Normal
0.5
635
Tumor
0.5
863
Tumor
0.5
493
Tumor
0.4
517
Tumor
0.4
925
Tumor
0.4
481
Tumor
0.4
185
Tumor
0.4
572
Normal
0.4
443
Tumor
0.4
423
Tumor
0.4
112
Tumor
0.4
342
Normal
0.4
558
Normal
0.4
313
Tumor
0.4
975
Tumor
0.4
564
Normal
0.4
227
Tumor
0.3
231
Tumor
0.3
431
Tumor
0.3
367
Tumor
0.3
278
Normal
0.3
427
Tumor
0.3
1015
Tumor
0.3
697
Tumor
0.3
351
Tumor
0.3
823
Tumor
0.3
1045
Tumor
0.3
744
Normal
0.3
867
Tumor
0.3
745
Tumor
0.3
861
Tumor
0.3
964
Normal
0.2
298
Normal
0.2
421
Tumor
0.2
743
Tumor
0.2
663
Tumor
0.2
554
Normal
0.2
537
Tumor
0.2
172
Normal
0.2
314
Normal
0.2
148
Normal
0.2
162
Normal
0.2
433
Tumor
0.2
446
Normal
0.2
528
Normal
0.2
312
Normal
0.2
221
Tumor
0.2
534
Normal
0.2
482
Normal
0.2
728
Normal
0.2
665
Tumor
0.2
127
Tumor
0.2
366
Normal
0.2
128
Normal
0.2
297
Tumor
0.2
228
Normal
0.2
864
Normal
0.2
387
Tumor
0.2
463
Tumor
0.2
715
Tumor
0.2
862
Normal
0.2
1041
Tumor
0.2
456
Normal
0.2
921
Tumor
0.2
425
Tumor
0.2
375
Tumor
0.2
858
Normal
0.2
1016
Normal
0.2
1022
Normal
0.2
956
Normal
0.1
882
Normal
0.1
877
Tumor
0.1
186
Normal
0.1
341
Tumor
0.1
977
Tumor
0.1
352
Normal
0.1
432
Normal
0.1
477
Tumor
0.1
742
Normal
0.1
553
Tumor
0.1
388
Normal
0.1
865
Tumor
0.1
368
Normal
0.1
147
Tumor
0.1
1046
Normal
0.1
574
Normal
0.1
546
Normal
0.1
982
Normal
0.1
113
Tumor
0.1
471
Tumor
0.1
1032
Normal
0.1
513
Tumor
0.1
435
Tumor
0.1
188
Normal
0.1
857
Tumor
0.1
467
Tumor
0.1
473
Tumor
0.1
866
Normal
0.1
357
Tumor
0.1
353
Tumor
0.1
444
Normal
0.1
642
Normal
0.1
376
Normal
0.1
497
Tumor
0.1
976
Normal
0.1
981
Tumor
0.1
285
Tumor
0.1
815
Tumor
0.1
332
Normal
0.1
257
Tumor
0.1
422
Normal
0.1
723
Tumor
0.1
124
Normal
0.1
868
Normal
0.1
191
Tumor
0.1
563
Tumor
0.1
196
Normal
0.1
358
Normal
0.0
484
Normal
0.0
527
Tumor
0.0
965
Tumor
0.0
187
Tumor
0.0
1043
Tumor
0.0
111
Normal
0.0
474
Normal
0.0
283
Tumor
0.0
343
Tumor
0.0
818
Normal
0.0
1014
Normal
0.0
698
Normal
0.0
1026
Normal
0.0
212
Normal
0.0
286
Normal
0.0
954
Normal
0.0
426
Normal
0.0
344
Normal
0.0
491
Tumor
0.0
738
Normal
0.0
615
Tumor
0.0
514
Normal
0.0
911
Tumor
0.0
448
Normal
0.0
462
Normal
0.0
755
Tumor
0.0
696
Normal
0.0
114
Normal
0.0
472
Normal
0.0
1044
Normal
0.0
816
Normal
0.0
538
Normal
0.0
464
Normal
0.0
874
Normal
0.0
135
Tumor
0.0
488
Normal
0.0
1025
Tumor
0.0
466
Normal
0.0
1042
Normal
0.0
434
Normal
0.0
222
Normal
0.0
424
Normal
0.0
224
Normal
0.0
354
Normal
0.0
492
Normal
0.0
824
Normal
0.0
881
Tumor
0.0
648
Normal
0.0
952
Normal
0.0
261
Tumor
-0.1
268
Normal
-0.1
817
Tumor
-0.1
362
Normal
-0.1
123
Tumor
-0.1
778
Normal
-0.1
478
Normal
-0.1
967
Tumor
-0.1
536
Normal
-0.1
413
Tumor
-0.1
978
Normal
-0.1
192
Normal
-0.1
924
Normal
-0.1
498
Normal
-0.1
494
Normal
-0.1
392
Normal
-0.1
138
Normal
-0.1
465
Tumor
-0.1
284
Normal
-0.1
271
Tumor
-0.1
914
Normal
-0.1
685
Tumor
-0.1
938
Normal
-0.1
171
Tumor
-0.1
616
Normal
-0.1
727
Tumor
-0.1
627
Tumor
-0.1
617
Tumor
-0.1
1028
Normal
-0.1
365
Tumor
-0.1
878
Normal
-0.1
922
Normal
-0.1
272
Normal
-0.1
518
Normal
-0.1
1013
Tumor
-0.1
396
Normal
-0.1
741
Tumor
-0.1
142
Normal
-0.1
943
Tumor
-0.1
777
Tumor
-0.1
468
Normal
-0.1
913
Tumor
-0.1
218
Normal
-0.1
232
Normal
-0.1
394
Normal
-0.1
883
Tumor
-0.1
428
Normal
-0.1
785
Tumor
-0.1
146
Normal
-0.2
722
Normal
-0.2
214
Normal
-0.2
126
Normal
-0.2
452
Normal
-0.2
258
Normal
-0.2
618
Normal
-0.2
636
Normal
-0.2
515
Tumor
-0.2
984
Normal
-0.2
412
Normal
-0.2
386
Normal
-0.2
628
Normal
-0.2
356
Normal
-0.2
125
Tumor
-0.2
383
Tumor
-0.2
136
Normal
-0.2
912
Normal
-0.2
926
Normal
-0.2
262
Normal
-0.2
414
Normal
-0.2
968
Normal
-0.2
716
Normal
-0.2
525
Tumor
-0.2
415
Tumor
-0.2
955
Tumor
-0.2
756
Normal
-0.2
746
Normal
-0.2
361
Tumor
-0.2
721
Tumor
-0.2
916
Normal
-0.2
851
Tumor
-0.2
686
Normal
-0.2
714
Normal
-0.2
535
Tumor
-0.2
217
Tumor
-0.2
852
Normal
-0.2
944
Normal
-0.2
447
Tumor
-0.3
533
Tumor
-0.3
145
Tumor
-0.3
461
Tumor
-0.3
918
Normal
-0.3
567
Tumor
-0.3
647
Tumor
-0.3
526
Normal
-0.3
814
Normal
-0.3
671
Tumor
-0.3
487
Tumor
-0.3
384
Normal
-0.3
213
Tumor
-0.3
884
Normal
-0.3
666
Normal
-0.3
1021
Tumor
-0.3
672
Normal
-0.3
516
Normal
-0.3
195
Tumor
-0.3
545
Tumor
-0.3
395
Tumor
-0.3
695
Tumor
-0.3
223
Tumor
-0.3
364
Normal
-0.3
662
Normal
-0.3
1031
Tumor
-0.3
524
Normal
-0.3
713
Tumor
-0.3
451
Tumor
-0.3
363
Tumor
-0.3
786
Normal
-0.3
958
Normal
-0.3
523
Tumor
-0.3
957
Tumor
-0.4
161
Tumor
-0.4
573
Tumor
-0.4
416
Normal
-0.4
966
Normal
-0.4
983
Tumor
-0.4
393
Tumor
-0.4
391
Tumor
-0.4
411
Tumor
-0.4
813
Tumor
-0.4
328
Normal
-0.4
664
Normal
-0.4
137
Tumor
-0.4
436
Normal
-0.4
917
Tumor
-0.4
132
Normal
-0.5
923
Tumor
-0.5
737
Tumor
-0.5
385
Tumor
-0.5
953
Tumor
-0.5
311
Tumor
-0.5
455
Tumor
-0.5
1027
Tumor
-0.5
141
Tumor
-0.6
131
Tumor
-0.6
327
Tumor
-0.6
355
Tumor
-0.7
724
Normal
-0.7
211
Tumor
-0.7
661
Tumor
-1.1
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
