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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NAT2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
60.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
47.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
46.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
41.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
38.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
38.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
35.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
34.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
34.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
33.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
32.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
31.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
31.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
26.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
26.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
26.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
26.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
24.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
24.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
23.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
22.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
21.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
20.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
20.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
20.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
20.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
20.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
20.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
20.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
19.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
19.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
19.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
18.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
18.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
18.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
16.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
15.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
15.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
15.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
15.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
15.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
14.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
14.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
14.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
13.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
13.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
12.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
12.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
12.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
12.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
11.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
11.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
11.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
10.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
10.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
10.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
10.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
10.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
10.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
10.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
10.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
10.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
9.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
9.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
9.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
9.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
8.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
8.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
8.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
8.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
8.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
8.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
8.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
8.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
8.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
8.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
8.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
7.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
7.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
7.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
7.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
7.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
7.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
7.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
7.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
7.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
7.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
7.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
7.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
7.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
7.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
6.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
6.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
6.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
6.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
6.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
6.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
6.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
6.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
6.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
6.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
6.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
5.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
5.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
5.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
5.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
5.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
5.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
5.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
5.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
5.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
5.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
5.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
5.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
5.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
5.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
5.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
4.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
4.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
4.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
4.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
4.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
4.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
4.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
4.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
4.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
4.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
4.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
4.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
4.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
4.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
4.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
4.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
4.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
4.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
4.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
3.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
3.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
3.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
3.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
3.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
3.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
3.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
3.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
3.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
3.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
3.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
3.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
3.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
3.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
3.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
3.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
2.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
2.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
2.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
2.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
2.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
2.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
2.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
2.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
2.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
2.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
2.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
2.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
2.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
2.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
2.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
2.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
2.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
2.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
2.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
2.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
2.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
2.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
1.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
1.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
1.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
1.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
1.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
1.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
1.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
1.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
1.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
1.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
1.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
1.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
1.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
1.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
1.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
1.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
1.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
1.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
1.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
1.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
1.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
1.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
1.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
1.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
1.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
1.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
1.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
1.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
1.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
1.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
1.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
1.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
1.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
0.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
0.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
0.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
0.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
0.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
0.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
0.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
0.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
0.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
0.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
0.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
0.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
0.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
0.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
0.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
0.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
0.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
0.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
0.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
0.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
0.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
0.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
0.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
0.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
0.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
0.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
0.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
0.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
0.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
0.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
0.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
0.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
0.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
0.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
0.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
0.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
0.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
0.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
0.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
0.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
0.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
0.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
0.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
0.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
0.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
0.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
0.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
0.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
0.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
0.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
0.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
0.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
0.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
0.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
0.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
0.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
0.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
0.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
0.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NAT2 is potential prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.0
Number of samples
231
Samples
Sample
Description
TPM
DO45107
0 years, female, NA, stage:2, alive, 1710 days
66.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
46.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
42.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
42.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
39.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
32.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
31.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
31.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
27.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
26.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
25.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
24.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
24.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
23.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
21.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
21.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
18.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
16.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
16.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
15.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
15.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
15.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
15.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
15.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
15.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
14.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
14.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
14.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
14.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
14.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
13.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
13.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
12.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
12.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
12.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
12.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
12.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
11.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
11.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
11.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
11.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
10.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
10.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
10.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
10.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
10.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
10.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
10.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
10.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
10.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
9.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
9.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
9.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
8.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
8.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
8.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
7.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
7.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
7.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
7.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
7.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
7.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
7.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
7.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
7.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
6.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
6.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
6.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
6.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
6.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
6.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
6.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
5.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
5.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
5.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
5.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
5.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
5.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
5.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
5.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
5.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
5.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
5.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
4.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
4.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
4.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
4.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
4.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
4.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
4.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
4.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
4.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
4.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
4.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
4.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
4.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
4.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
4.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
4.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
4.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
3.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
3.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
3.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
3.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
3.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
3.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
3.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
3.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
3.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
3.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
3.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
2.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
2.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
2.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
2.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
2.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
2.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
2.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
2.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
2.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
2.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
2.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
2.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
2.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
2.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
2.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
2.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
2.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
1.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
1.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
1.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
1.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
1.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
1.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
1.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
1.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
1.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
1.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
1.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
1.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
1.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
1.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
1.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
1.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
1.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
1.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
1.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
1.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
1.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
0.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
0.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
0.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
0.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
0.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
0.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
0.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
0.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
0.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
0.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
0.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
0.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
0.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
0.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
0.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
0.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
0.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
0.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
0.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
0.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
0.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
0.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
0.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
0.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
0.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
0.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
0.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
0.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
0.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
0.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
0.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
0.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
0.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
0.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
0.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
0.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
0.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
0.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
0.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
0.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
0.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
0.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
0.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
0.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
0.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
0.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
0.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
0.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
0.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
0.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
0.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
0.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
0.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
0.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
0.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
0.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
0.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
0.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
0.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
0.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
0.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
0.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
0.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
0.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
0.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
0.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
0.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
0.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
0.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
0.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
0.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
0.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
0.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
128
Normal
2.1
572
Normal
1.7
862
Normal
1.7
698
Normal
1.6
955
Tumor
1.6
816
Normal
1.5
714
Normal
1.5
466
Normal
1.4
952
Normal
1.4
1046
Normal
1.4
426
Normal
1.4
722
Normal
1.3
126
Normal
1.3
356
Normal
1.3
756
Normal
1.3
172
Normal
1.3
136
Normal
1.3
132
Normal
1.3
446
Normal
1.2
162
Normal
1.2
272
Normal
1.1
616
Normal
1.1
662
Normal
1.1
723
Tumor
1.1
376
Normal
1.0
232
Normal
1.0
414
Normal
1.0
534
Normal
1.0
366
Normal
1.0
514
Normal
1.0
218
Normal
1.0
196
Normal
1.0
956
Normal
1.0
518
Normal
1.0
526
Normal
1.0
394
Normal
0.9
142
Normal
0.9
462
Normal
0.9
212
Normal
0.9
636
Normal
0.9
878
Normal
0.8
728
Normal
0.8
482
Normal
0.8
912
Normal
0.8
1022
Normal
0.8
778
Normal
0.8
648
Normal
0.8
618
Normal
0.8
1016
Normal
0.8
742
Normal
0.8
222
Normal
0.8
966
Normal
0.8
716
Normal
0.7
528
Normal
0.7
926
Normal
0.7
396
Normal
0.7
984
Normal
0.7
642
Normal
0.7
1028
Normal
0.7
968
Normal
0.7
944
Normal
0.7
386
Normal
0.6
148
Normal
0.6
964
Normal
0.6
866
Normal
0.6
332
Normal
0.6
1026
Normal
0.6
492
Normal
0.6
472
Normal
0.6
564
Normal
0.6
982
Normal
0.6
468
Normal
0.6
384
Normal
0.6
824
Normal
0.6
558
Normal
0.6
424
Normal
0.6
428
Normal
0.6
362
Normal
0.6
884
Normal
0.6
186
Normal
0.6
224
Normal
0.6
488
Normal
0.6
852
Normal
0.5
494
Normal
0.5
1032
Normal
0.5
882
Normal
0.5
342
Normal
0.5
195
Tumor
0.5
513
Tumor
0.5
312
Normal
0.5
268
Normal
0.5
464
Normal
0.5
358
Normal
0.5
1044
Normal
0.5
214
Normal
0.5
452
Normal
0.5
368
Normal
0.5
474
Normal
0.4
388
Normal
0.4
874
Normal
0.4
228
Normal
0.4
858
Normal
0.4
914
Normal
0.4
344
Normal
0.4
554
Normal
0.4
284
Normal
0.4
124
Normal
0.4
191
Tumor
0.3
918
Normal
0.3
412
Normal
0.3
981
Tumor
0.3
262
Normal
0.3
954
Normal
0.3
416
Normal
0.3
141
Tumor
0.3
353
Tumor
0.3
1045
Tumor
0.3
192
Normal
0.3
1042
Normal
0.3
696
Normal
0.3
138
Normal
0.3
913
Tumor
0.3
364
Normal
0.3
868
Normal
0.3
392
Normal
0.2
922
Normal
0.2
448
Normal
0.2
911
Tumor
0.2
924
Normal
0.2
354
Normal
0.2
444
Normal
0.1
538
Normal
0.1
217
Tumor
0.1
352
Normal
0.1
686
Normal
0.1
978
Normal
0.1
1015
Tumor
0.1
481
Tumor
0.0
867
Tumor
-0.1
383
Tumor
-0.2
465
Tumor
-0.2
916
Normal
-0.2
536
Normal
-0.2
491
Tumor
-0.2
617
Tumor
-0.3
451
Tumor
-0.3
861
Tumor
-0.3
365
Tumor
-0.3
423
Tumor
-0.3
744
Normal
-0.3
145
Tumor
-0.4
478
Normal
-0.4
436
Normal
-0.4
915
Tumor
-0.4
524
Normal
-0.4
258
Normal
-0.4
137
Tumor
-0.5
498
Normal
-0.5
627
Tumor
-0.5
755
Tumor
-0.5
415
Tumor
-0.5
1014
Normal
-0.5
938
Normal
-0.5
456
Normal
-0.5
1041
Tumor
-0.5
628
Normal
-0.6
146
Normal
-0.6
113
Tumor
-0.6
432
Normal
-0.6
434
Normal
-0.6
111
Normal
-0.6
261
Tumor
-0.6
741
Tumor
-0.6
422
Normal
-0.6
546
Normal
-0.6
721
Tumor
-0.6
477
Tumor
-0.6
286
Normal
-0.7
857
Tumor
-0.7
395
Tumor
-0.7
427
Tumor
-0.7
943
Tumor
-0.7
213
Tumor
-0.7
445
Tumor
-0.7
188
Normal
-0.7
461
Tumor
-0.8
421
Tumor
-0.8
114
Normal
-0.8
953
Tumor
-0.8
135
Tumor
-0.8
864
Normal
-0.8
171
Tumor
-0.8
161
Tumor
-0.8
615
Tumor
-0.8
221
Tumor
-0.9
568
Normal
-0.9
967
Tumor
-0.9
917
Tumor
-0.9
818
Normal
-0.9
851
Tumor
-0.9
724
Normal
-0.9
231
Tumor
-0.9
127
Tumor
-0.9
976
Normal
-0.9
298
Normal
-0.9
357
Tumor
-0.9
278
Normal
-0.9
738
Normal
-1.0
977
Tumor
-1.0
823
Tumor
-1.0
467
Tumor
-1.0
185
Tumor
-1.0
516
Normal
-1.0
328
Normal
-1.0
327
Tumor
-1.0
484
Normal
-1.0
983
Tumor
-1.0
314
Normal
-1.0
664
Normal
-1.0
713
Tumor
-1.0
571
Tumor
-1.1
574
Normal
-1.1
958
Normal
-1.1
435
Tumor
-1.1
563
Tumor
-1.1
533
Tumor
-1.1
493
Tumor
-1.1
1027
Tumor
-1.1
447
Tumor
-1.1
883
Tumor
-1.1
267
Tumor
-1.1
393
Tumor
-1.1
425
Tumor
-1.1
881
Tumor
-1.2
666
Normal
-1.2
786
Normal
-1.2
131
Tumor
-1.2
433
Tumor
-1.2
925
Tumor
-1.2
463
Tumor
-1.2
873
Tumor
-1.2
815
Tumor
-1.2
187
Tumor
-1.3
443
Tumor
-1.3
877
Tumor
-1.3
341
Tumor
-1.3
951
Tumor
-1.3
351
Tumor
-1.3
455
Tumor
-1.3
697
Tumor
-1.3
1013
Tumor
-1.3
413
Tumor
-1.4
715
Tumor
-1.4
695
Tumor
-1.4
672
Normal
-1.4
271
Tumor
-1.4
343
Tumor
-1.4
863
Tumor
-1.4
663
Tumor
-1.5
567
Tumor
-1.5
937
Tumor
-1.5
685
Tumor
-1.5
361
Tumor
-1.5
963
Tumor
-1.5
527
Tumor
-1.5
375
Tumor
-1.5
1021
Tumor
-1.5
431
Tumor
-1.5
573
Tumor
-1.5
746
Normal
-1.5
123
Tumor
-1.5
355
Tumor
-1.5
112
Tumor
-1.5
147
Tumor
-1.5
1043
Tumor
-1.5
227
Tumor
-1.6
865
Tumor
-1.6
923
Tumor
-1.6
557
Tumor
-1.6
1025
Tumor
-1.6
814
Normal
-1.6
391
Tumor
-1.6
727
Tumor
-1.6
671
Tumor
-1.6
975
Tumor
-1.6
125
Tumor
-1.6
387
Tumor
-1.6
743
Tumor
-1.6
737
Tumor
-1.7
331
Tumor
-1.7
641
Tumor
-1.7
665
Tumor
-1.7
525
Tumor
-1.8
257
Tumor
-1.8
363
Tumor
-1.8
535
Tumor
-1.8
817
Tumor
-1.8
635
Tumor
-1.8
311
Tumor
-1.8
497
Tumor
-1.8
367
Tumor
-1.8
537
Tumor
-1.8
471
Tumor
-1.8
517
Tumor
-1.8
1031
Tumor
-1.8
297
Tumor
-1.9
223
Tumor
-1.9
813
Tumor
-1.9
777
Tumor
-1.9
211
Tumor
-1.9
745
Tumor
-1.9
553
Tumor
-1.9
411
Tumor
-1.9
921
Tumor
-2.0
515
Tumor
-2.0
487
Tumor
-2.0
385
Tumor
-2.0
313
Tumor
-2.0
523
Tumor
-2.0
277
Tumor
-2.0
965
Tumor
-2.0
483
Tumor
-2.1
785
Tumor
-2.1
957
Tumor
-2.1
283
Tumor
-2.1
545
Tumor
-2.1
285
Tumor
-2.1
473
Tumor
-2.2
661
Tumor
-2.2
647
Tumor
-2.2
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.