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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RRAGA is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
41.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
114.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
102.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
101.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
97.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
95.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
95.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
94.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
94.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
93.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
90.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
90.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
87.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
86.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
86.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
84.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
84.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
83.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
81.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
80.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
79.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
79.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
78.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
75.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
74.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
73.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
71.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
71.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
70.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
70.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
69.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
69.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
69.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
69.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
68.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
68.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
68.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
67.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
67.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
67.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
66.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
66.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
66.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
65.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
64.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
64.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
63.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
62.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
61.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
61.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
60.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
60.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
60.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
60.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
60.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
60.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
59.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
58.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
58.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
58.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
58.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
57.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
57.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
57.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
57.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
56.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
55.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
55.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
55.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
55.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
55.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
54.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
54.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
54.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
54.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
54.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
54.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
54.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
54.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
54.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
53.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
53.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
53.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
53.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
52.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
52.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
52.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
51.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
51.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
51.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
51.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
51.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
51.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
50.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
50.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
50.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
49.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
49.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
49.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
49.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
48.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
48.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
48.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
48.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
48.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
47.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
47.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
47.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
47.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
46.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
46.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
46.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
45.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
45.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
45.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
45.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
44.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
44.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
44.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
44.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
44.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
44.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
43.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
43.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
43.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
43.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
43.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
42.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
42.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
42.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
42.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
42.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
42.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
42.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
42.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
42.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
42.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
42.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
42.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
41.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
41.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
41.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
41.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
41.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
41.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
41.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
41.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
40.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
40.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
40.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
40.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
40.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
40.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
40.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
39.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
39.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
39.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
39.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
39.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
39.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
39.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
39.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
38.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
38.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
38.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
38.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
38.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
38.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
38.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
38.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
37.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
37.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
37.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
37.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
37.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
37.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
37.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
37.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
37.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
36.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
36.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
36.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
36.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
36.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
36.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
36.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
36.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
36.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
36.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
36.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
36.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
36.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
35.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
35.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
35.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
35.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
35.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
35.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
35.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
35.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
35.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
34.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
34.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
34.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
34.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
34.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
34.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
34.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
34.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
34.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
34.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
34.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
34.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
34.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
34.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
34.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
33.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
33.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
33.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
33.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
33.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
33.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
33.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
33.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
32.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
32.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
32.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
32.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
32.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
32.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
31.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
31.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
31.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
31.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
31.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
31.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
31.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
31.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
31.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
31.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
31.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
30.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
30.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
30.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
30.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
30.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
30.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
30.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
30.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
30.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
30.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
30.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
30.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
30.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
30.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
29.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
29.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
29.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
29.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
29.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
29.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
29.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
29.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
29.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
28.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
28.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
28.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
28.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
28.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
28.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
28.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
28.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
28.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
27.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
27.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
27.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
27.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
27.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
27.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
27.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
27.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
27.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
27.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
26.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
26.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
26.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
26.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
26.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
26.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
26.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
26.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
25.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
25.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
25.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
25.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
25.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
25.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
25.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
25.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
25.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
25.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
24.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
24.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
24.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
24.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
24.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
24.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
24.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
24.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
23.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
23.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
23.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
23.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
23.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
23.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
23.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
23.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
23.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
23.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
23.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
22.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
22.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
22.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
22.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
22.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
21.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
21.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
21.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
21.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
21.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
21.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
20.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
20.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
20.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
20.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
19.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
19.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
19.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
19.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
18.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
18.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
18.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
18.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
17.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
17.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
17.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
17.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
16.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
16.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
15.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
15.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
14.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
14.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
13.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
13.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
12.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
12.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
12.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
11.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
10.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
10.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
6.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RRAGA is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
36.2
Number of samples
231
Samples
Sample
Description
TPM
DO45131
0 years, male, NA, stage:4, dead, 360 days
102.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
89.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
85.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
76.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
75.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
75.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
70.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
69.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
67.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
65.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
64.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
60.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
60.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
59.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
58.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
58.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
58.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
57.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
57.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
57.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
56.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
55.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
55.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
55.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
55.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
55.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
54.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
54.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
53.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
51.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
51.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
51.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
50.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
50.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
50.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
49.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
49.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
49.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
48.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
48.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
48.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
48.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
48.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
46.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
45.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
45.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
45.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
44.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
44.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
44.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
44.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
44.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
44.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
44.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
43.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
43.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
43.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
43.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
43.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
43.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
42.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
42.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
42.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
41.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
41.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
41.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
41.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
41.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
41.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
41.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
41.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
41.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
40.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
40.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
40.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
40.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
40.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
39.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
39.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
38.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
38.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
38.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
38.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
38.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
37.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
37.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
37.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
37.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
37.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
37.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
37.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
36.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
36.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
36.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
36.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
36.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
36.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
36.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
36.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
35.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
35.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
35.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
35.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
35.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
35.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
34.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
34.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
34.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
34.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
34.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
34.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
34.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
34.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
33.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
33.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
33.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
33.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
33.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
33.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
33.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
33.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
33.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
32.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
32.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
32.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
32.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
32.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
32.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
32.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
32.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
31.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
31.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
31.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
31.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
31.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
30.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
30.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
30.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
30.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
30.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
30.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
30.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
30.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
30.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
29.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
29.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
29.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
28.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
28.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
28.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
28.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
28.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
28.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
28.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
28.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
28.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
28.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
28.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
27.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
27.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
27.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
27.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
27.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
27.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
27.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
27.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
27.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
27.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
27.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
27.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
26.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
26.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
26.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
25.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
25.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
25.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
25.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
25.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
25.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
25.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
25.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
25.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
24.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
24.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
24.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
23.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
23.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
23.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
23.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
23.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
23.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
22.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
22.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
22.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
22.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
22.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
22.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
22.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
22.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
21.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
21.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
21.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
21.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
21.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
21.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
21.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
21.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
21.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
21.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
21.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
21.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
21.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
20.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
20.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
20.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
19.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
19.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
18.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
18.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
18.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
17.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
16.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
16.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
16.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
16.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
16.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
15.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
15.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
15.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
13.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
11.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
125
Tumor
1.0
537
Tumor
1.0
491
Tumor
1.0
851
Tumor
1.0
957
Tumor
0.9
1027
Tumor
0.8
147
Tumor
0.7
283
Tumor
0.7
313
Tumor
0.7
257
Tumor
0.7
745
Tumor
0.7
343
Tumor
0.6
368
Normal
0.6
953
Tumor
0.6
1025
Tumor
0.5
366
Normal
0.5
375
Tumor
0.5
384
Normal
0.5
573
Tumor
0.4
376
Normal
0.4
421
Tumor
0.4
533
Tumor
0.4
685
Tumor
0.4
557
Tumor
0.4
925
Tumor
0.3
362
Normal
0.3
451
Tumor
0.3
395
Tumor
0.3
1045
Tumor
0.3
713
Tumor
0.3
911
Tumor
0.3
355
Tumor
0.3
965
Tumor
0.3
298
Normal
0.3
332
Normal
0.3
482
Normal
0.3
352
Normal
0.2
943
Tumor
0.2
741
Tumor
0.2
387
Tumor
0.2
724
Normal
0.2
124
Normal
0.2
715
Tumor
0.2
478
Normal
0.2
136
Normal
0.2
917
Tumor
0.2
744
Normal
0.2
867
Tumor
0.2
425
Tumor
0.2
344
Normal
0.2
525
Tumor
0.2
224
Normal
0.2
1041
Tumor
0.2
1014
Normal
0.2
145
Tumor
0.2
1015
Tumor
0.2
524
Normal
0.2
513
Tumor
0.2
354
Normal
0.2
231
Tumor
0.2
952
Normal
0.2
617
Tumor
0.2
211
Tumor
0.2
353
Tumor
0.2
223
Tumor
0.1
473
Tumor
0.1
358
Normal
0.1
471
Tumor
0.1
923
Tumor
0.1
663
Tumor
0.1
432
Normal
0.1
914
Normal
0.1
817
Tumor
0.1
951
Tumor
0.1
958
Normal
0.1
647
Tumor
0.1
467
Tumor
0.1
954
Normal
0.1
111
Normal
0.1
966
Normal
0.1
862
Normal
0.1
535
Tumor
0.1
342
Normal
0.1
462
Normal
0.1
477
Tumor
0.1
472
Normal
0.1
516
Normal
0.1
361
Tumor
0.1
742
Normal
0.1
278
Normal
0.1
221
Tumor
0.1
526
Normal
0.1
232
Normal
0.1
926
Normal
0.1
823
Tumor
0.1
661
Tumor
0.1
1013
Tumor
0.1
424
Normal
0.1
697
Tumor
0.1
314
Normal
0.1
1028
Normal
0.1
861
Tumor
0.1
185
Tumor
0.1
884
Normal
0.1
365
Tumor
0.1
312
Normal
0.1
212
Normal
0.1
427
Tumor
0.1
412
Normal
0.1
686
Normal
0.1
978
Normal
0.1
746
Normal
0.1
858
Normal
0.1
481
Tumor
0.1
142
Normal
0.1
517
Tumor
0.1
262
Normal
0.1
818
Normal
0.1
284
Normal
0.0
391
Tumor
0.0
415
Tumor
0.0
456
Normal
0.0
436
Normal
0.0
464
Normal
0.0
132
Normal
0.0
816
Normal
0.0
824
Normal
0.0
444
Normal
0.0
968
Normal
0.0
328
Normal
0.0
272
Normal
0.0
1026
Normal
0.0
392
Normal
0.0
222
Normal
0.0
937
Tumor
0.0
448
Normal
0.0
695
Tumor
0.0
518
Normal
0.0
1022
Normal
0.0
172
Normal
0.0
877
Tumor
0.0
128
Normal
0.0
123
Tumor
0.0
662
Normal
0.0
148
Normal
0.0
514
Normal
0.0
912
Normal
0.0
413
Tumor
0.0
286
Normal
0.0
964
Normal
0.0
498
Normal
0.0
162
Normal
0.0
672
Normal
0.0
882
Normal
0.0
363
Tumor
0.0
341
Tumor
0.0
227
Tumor
0.0
563
Tumor
0.0
356
Normal
0.0
443
Tumor
0.0
434
Normal
0.0
146
Normal
0.0
883
Tumor
0.0
865
Tumor
0.0
921
Tumor
0.0
874
Normal
0.0
615
Tumor
0.0
422
Normal
0.0
466
Normal
0.0
864
Normal
N/A
488
Normal
0.0
261
Tumor
0.0
228
Normal
0.0
737
Tumor
0.0
866
Normal
0.0
777
Tumor
0.0
218
Normal
0.0
126
Normal
0.0
493
Tumor
0.0
428
Normal
0.0
571
Tumor
0.0
386
Normal
0.0
135
Tumor
0.0
483
Tumor
0.0
984
Normal
0.0
976
Normal
0.0
1044
Normal
0.0
918
Normal
0.0
492
Normal
0.0
536
Normal
0.0
396
Normal
0.0
367
Tumor
0.0
938
Normal
0.0
188
Normal
0.0
268
Normal
0.0
474
Normal
0.0
728
Normal
0.0
214
Normal
0.0
1046
Normal
0.0
114
Normal
0.0
567
Tumor
0.0
778
Normal
0.0
756
Normal
0.0
416
Normal
0.0
738
Normal
0.0
716
Normal
0.0
955
Tumor
0.0
426
Normal
0.0
666
Normal
0.0
311
Tumor
0.0
186
Normal
0.0
723
Tumor
0.0
873
Tumor
0.0
956
Normal
0.0
924
Normal
0.0
388
Normal
0.0
327
Tumor
0.0
868
Normal
-0.1
878
Normal
-0.1
1021
Tumor
-0.1
423
Tumor
-0.1
963
Tumor
-0.1
721
Tumor
-0.1
394
Normal
-0.1
1032
Normal
-0.1
468
Normal
-0.1
664
Normal
-0.1
916
Normal
-0.1
881
Tumor
-0.1
258
Normal
-0.1
1031
Tumor
-0.1
213
Tumor
-0.1
1042
Normal
-0.1
981
Tumor
-0.1
364
Normal
-0.1
616
Normal
-0.1
494
Normal
-0.1
755
Tumor
-0.1
435
Tumor
-0.1
461
Tumor
-0.1
217
Tumor
-0.1
171
Tumor
-0.1
696
Normal
-0.1
433
Tumor
-0.1
277
Tumor
-0.1
141
Tumor
-0.1
138
Normal
-0.1
271
Tumor
-0.1
411
Tumor
-0.1
414
Normal
-0.1
1016
Normal
-0.1
922
Normal
-0.1
944
Normal
-0.1
977
Tumor
-0.1
112
Tumor
-0.1
385
Tumor
-0.1
665
Tumor
-0.1
913
Tumor
-0.1
487
Tumor
-0.1
815
Tumor
-0.1
137
Tumor
-0.1
452
Normal
-0.1
192
Normal
-0.1
195
Tumor
-0.1
297
Tumor
-0.1
267
Tumor
-0.1
671
Tumor
-0.1
187
Tumor
-0.1
627
Tumor
-0.1
636
Normal
-0.1
545
Tumor
-0.1
641
Tumor
-0.1
722
Normal
-0.1
534
Normal
-0.1
484
Normal
-0.1
538
Normal
-0.2
852
Normal
-0.2
554
Normal
-0.2
331
Tumor
-0.2
698
Normal
-0.2
113
Tumor
-0.2
564
Normal
-0.2
863
Tumor
-0.2
975
Tumor
-0.2
393
Tumor
-0.2
568
Normal
-0.2
127
Tumor
-0.2
785
Tumor
-0.2
446
Normal
-0.2
574
Normal
-0.2
786
Normal
-0.2
528
Normal
-0.2
196
Normal
-0.2
648
Normal
-0.2
982
Normal
-0.2
285
Tumor
-0.2
558
Normal
-0.2
618
Normal
-0.2
546
Normal
-0.2
814
Normal
-0.2
383
Tumor
-0.2
572
Normal
-0.2
191
Tumor
-0.2
463
Tumor
-0.2
553
Tumor
-0.2
915
Tumor
-0.2
447
Tumor
-0.3
161
Tumor
-0.3
967
Tumor
-0.3
813
Tumor
-0.3
714
Normal
-0.3
445
Tumor
-0.3
357
Tumor
-0.3
1043
Tumor
-0.3
431
Tumor
-0.3
857
Tumor
-0.3
628
Normal
-0.3
527
Tumor
-0.3
131
Tumor
-0.3
642
Normal
-0.3
983
Tumor
-0.3
497
Tumor
-0.3
455
Tumor
-0.3
515
Tumor
-0.4
743
Tumor
-0.4
523
Tumor
-0.4
351
Tumor
-0.4
465
Tumor
-0.4
727
Tumor
-0.4
635
Tumor
-0.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
