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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RNF20 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
38.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
37.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
33.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
29.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
26.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
26.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
26.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
25.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
24.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
24.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
23.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
23.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
22.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
22.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
22.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
22.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
20.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
20.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
20.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
20.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
19.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
19.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
19.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
19.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
18.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
18.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
18.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
18.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
18.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
17.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
16.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
16.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
16.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
16.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
15.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
15.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
15.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
15.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
14.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
14.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
14.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
14.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
14.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
13.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
13.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
13.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
13.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
13.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
13.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
13.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
13.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
13.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
13.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
13.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
13.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
12.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
12.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
12.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
12.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
12.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
12.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
12.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
12.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
12.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
12.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
12.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
12.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
11.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
11.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
11.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
11.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
11.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
11.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
11.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
11.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
11.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
11.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
11.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
11.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
11.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
11.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
11.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
11.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
11.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
11.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
11.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
11.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
11.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
11.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
11.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
10.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
10.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
10.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
10.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
10.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
10.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
10.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
10.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
10.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
10.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
10.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
10.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
10.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
10.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
10.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
10.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
10.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
10.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
10.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
10.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
10.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
10.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
10.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
10.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
10.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
9.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
9.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
9.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
9.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
9.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
9.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
9.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
9.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
9.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
9.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
9.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
9.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
9.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
9.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
9.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
9.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
9.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
9.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
9.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
9.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
9.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
9.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
9.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
9.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
9.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
9.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
8.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
8.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
8.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
8.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
8.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
8.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
8.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
8.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
8.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
8.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
8.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
8.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
8.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
8.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
8.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
8.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
8.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
8.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
8.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
8.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
8.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
8.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
8.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
8.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
8.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
8.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
8.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
8.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
8.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
7.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
7.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
7.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
7.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
7.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
7.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
7.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
7.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
7.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
7.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
7.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
7.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
7.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
7.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
7.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
7.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
7.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
7.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
7.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
7.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
7.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
7.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
7.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
7.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
7.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
7.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
7.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
7.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
7.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
7.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
7.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
7.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
7.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
7.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
7.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
7.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
7.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
7.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
7.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
7.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
7.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
7.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
7.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
7.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
7.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
7.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
6.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
6.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
6.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
6.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
6.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
6.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
6.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
6.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
6.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
6.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
6.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
6.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
6.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
6.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
6.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
6.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
6.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
6.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
6.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
6.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
6.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
6.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
6.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
6.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
6.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
6.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
6.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
6.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
6.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
6.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
6.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
5.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
5.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
5.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
5.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
5.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
5.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
5.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
5.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
5.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
5.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
5.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
5.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
5.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
5.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
5.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
5.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
5.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
5.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
5.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
5.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
5.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
5.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
5.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
5.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
5.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
5.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
5.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
5.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
5.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
5.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
5.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
5.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
4.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
4.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
4.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
4.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
4.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
4.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
4.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
4.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
4.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
4.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
4.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
4.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
4.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
3.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
3.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
3.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
3.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RNF20 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.3
Number of samples
231
Samples
Sample
Description
TPM
DO45205
0 years, female, NA, stage:2, dead, 90 days
34.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
28.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
27.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
26.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
25.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
25.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
24.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
24.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
24.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
23.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
23.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
22.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
21.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
20.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
19.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
18.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
18.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
18.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
18.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
17.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
17.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
16.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
16.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
15.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
15.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
15.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
15.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
15.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
15.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
15.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
15.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
14.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
14.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
14.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
14.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
14.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
14.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
14.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
14.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
14.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
14.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
13.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
13.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
13.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
13.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
13.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
13.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
13.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
13.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
13.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
13.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
13.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
13.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
12.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
12.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
12.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
12.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
12.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
12.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
12.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
12.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
12.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
12.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
12.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
12.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
12.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
12.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
12.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
12.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
11.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
11.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
11.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
11.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
11.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
11.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
11.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
11.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
11.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
11.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
11.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
11.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
11.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
10.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
10.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
10.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
10.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
10.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
10.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
10.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
10.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
10.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
10.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
10.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
10.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
10.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
10.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
10.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
10.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
10.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
9.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
9.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
9.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
9.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
9.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
9.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
9.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
9.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
9.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
9.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
9.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
9.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
9.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
9.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
9.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
9.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
9.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
9.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
9.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
9.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
9.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
9.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
9.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
8.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
8.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
8.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
8.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
8.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
8.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
8.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
8.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
8.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
8.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
8.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
8.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
8.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
8.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
8.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
8.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
8.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
8.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
8.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
8.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
8.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
8.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
8.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
8.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
7.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
7.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
7.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
7.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
7.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
7.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
7.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
7.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
7.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
7.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
7.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
7.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
7.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
7.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
7.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
7.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
7.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
7.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
7.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
7.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
7.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
7.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
7.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
7.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
7.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
7.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
7.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
7.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
7.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
6.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
6.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
6.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
6.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
6.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
6.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
6.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
6.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
6.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
6.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
6.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
6.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
6.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
6.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
6.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
6.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
6.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
6.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
6.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
6.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
6.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
5.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
5.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
5.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
5.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
5.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
5.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
5.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
5.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
5.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
5.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
5.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
5.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
5.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
4.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
4.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
4.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
4.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
4.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
4.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
4.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
4.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
4.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
4.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
4.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
3.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
3.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
3.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
3.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
3.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
3.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
2.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
2.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
2.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1013
Tumor
1.2
497
Tumor
1.0
957
Tumor
0.9
865
Tumor
0.9
965
Tumor
0.9
473
Tumor
0.8
951
Tumor
0.8
967
Tumor
0.8
355
Tumor
0.7
411
Tumor
0.7
425
Tumor
0.7
743
Tumor
0.7
533
Tumor
0.7
695
Tumor
0.7
523
Tumor
0.7
685
Tumor
0.6
1031
Tumor
0.6
923
Tumor
0.6
921
Tumor
0.6
977
Tumor
0.6
983
Tumor
0.6
545
Tumor
0.6
131
Tumor
0.6
813
Tumor
0.6
535
Tumor
0.6
724
Normal
0.6
463
Tumor
0.5
647
Tumor
0.5
737
Tumor
0.5
331
Tumor
0.5
943
Tumor
0.5
477
Tumor
0.5
211
Tumor
0.5
953
Tumor
0.5
161
Tumor
0.5
937
Tumor
0.5
663
Tumor
0.5
1021
Tumor
0.5
313
Tumor
0.5
777
Tumor
0.5
351
Tumor
0.5
517
Tumor
0.5
357
Tumor
0.5
123
Tumor
0.4
487
Tumor
0.4
447
Tumor
0.4
661
Tumor
0.4
817
Tumor
0.4
877
Tumor
0.4
727
Tumor
0.4
881
Tumor
0.4
1025
Tumor
0.4
814
Normal
0.4
741
Tumor
0.4
553
Tumor
0.4
537
Tumor
0.4
917
Tumor
0.4
883
Tumor
0.4
491
Tumor
0.4
127
Tumor
0.3
427
Tumor
0.3
471
Tumor
0.3
815
Tumor
0.3
963
Tumor
0.3
1027
Tumor
0.3
715
Tumor
0.3
975
Tumor
0.3
277
Tumor
0.3
385
Tumor
0.3
413
Tumor
0.3
465
Tumor
0.3
515
Tumor
0.3
525
Tumor
0.3
393
Tumor
0.3
641
Tumor
0.3
483
Tumor
0.3
863
Tumor
0.2
367
Tumor
0.2
527
Tumor
0.2
271
Tumor
0.2
221
Tumor
0.2
227
Tumor
0.2
283
Tumor
0.2
431
Tumor
0.2
213
Tumor
0.2
297
Tumor
0.2
721
Tumor
0.2
311
Tumor
0.2
573
Tumor
0.2
671
Tumor
0.2
343
Tumor
0.2
513
Tumor
0.2
391
Tumor
0.2
125
Tumor
0.2
383
Tumor
0.2
493
Tumor
0.2
873
Tumor
0.2
341
Tumor
0.2
861
Tumor
0.2
217
Tumor
0.2
285
Tumor
0.2
524
Normal
0.1
913
Tumor
0.1
697
Tumor
0.1
1041
Tumor
0.1
478
Normal
0.1
915
Tumor
0.1
467
Tumor
0.1
536
Normal
0.1
455
Tumor
0.1
435
Tumor
0.1
461
Tumor
0.1
223
Tumor
0.1
665
Tumor
0.1
925
Tumor
0.1
867
Tumor
0.1
635
Tumor
0.1
981
Tumor
0.1
112
Tumor
0.1
415
Tumor
0.1
141
Tumor
0.1
1015
Tumor
0.0
267
Tumor
0.0
713
Tumor
0.0
958
Normal
0.0
492
Normal
0.0
387
Tumor
0.0
755
Tumor
0.0
966
Normal
0.0
916
Normal
0.0
538
Normal
0.0
257
Tumor
0.0
823
Tumor
0.0
147
Tumor
0.0
443
Tumor
0.0
171
Tumor
0.0
567
Tumor
0.0
187
Tumor
0.0
851
Tumor
0.0
554
Normal
0.0
433
Tumor
0.0
498
Normal
0.0
686
Normal
0.0
516
Normal
0.0
484
Normal
0.0
231
Tumor
0.0
571
Tumor
0.0
976
Normal
0.0
857
Tumor
0.0
964
Normal
0.0
488
Normal
0.0
113
Tumor
0.0
756
Normal
0.0
968
Normal
0.0
451
Tumor
0.0
534
Normal
0.0
185
Tumor
-0.1
984
Normal
-0.1
327
Tumor
-0.1
1043
Tumor
-0.1
191
Tumor
-0.1
518
Normal
-0.1
978
Normal
-0.1
261
Tumor
-0.1
423
Tumor
-0.1
412
Normal
-0.1
514
Normal
-0.1
212
Normal
-0.1
395
Tumor
-0.1
1014
Normal
-0.1
924
Normal
-0.1
954
Normal
-0.1
546
Normal
-0.1
192
Normal
-0.1
344
Normal
-0.1
388
Normal
-0.1
744
Normal
-0.1
268
Normal
-0.1
785
Tumor
-0.1
696
Normal
-0.1
365
Tumor
-0.1
361
Tumor
-0.1
526
Normal
-0.1
375
Tumor
-0.1
938
Normal
-0.1
328
Normal
-0.1
955
Tumor
-0.1
922
Normal
-0.1
926
Normal
-0.1
472
Normal
-0.1
145
Tumor
-0.1
778
Normal
-0.1
786
Normal
-0.1
858
Normal
-0.1
481
Tumor
-0.1
716
Normal
-0.1
352
Normal
-0.1
868
Normal
-0.1
386
Normal
-0.1
142
Normal
-0.1
462
Normal
-0.1
444
Normal
-0.1
1028
Normal
-0.1
224
Normal
-0.1
728
Normal
-0.1
1016
Normal
-0.1
356
Normal
-0.1
482
Normal
-0.1
494
Normal
-0.1
952
Normal
-0.1
818
Normal
-0.1
944
Normal
-0.1
866
Normal
-0.1
396
Normal
-0.1
392
Normal
-0.1
672
Normal
-0.1
714
Normal
-0.1
918
Normal
-0.1
354
Normal
-0.1
126
Normal
-0.1
342
Normal
-0.1
528
Normal
-0.1
195
Tumor
-0.2
723
Tumor
-0.2
421
Tumor
-0.2
982
Normal
-0.2
722
Normal
-0.2
364
Normal
-0.2
852
Normal
-0.2
137
Tumor
-0.2
1045
Tumor
-0.2
824
Normal
-0.2
353
Tumor
-0.2
363
Tumor
-0.2
284
Normal
-0.2
146
Normal
-0.2
218
Normal
-0.2
474
Normal
-0.2
862
Normal
-0.2
884
Normal
-0.2
912
Normal
-0.2
816
Normal
-0.2
358
Normal
-0.2
563
Tumor
-0.2
1032
Normal
-0.2
738
Normal
-0.2
332
Normal
-0.2
956
Normal
-0.2
394
Normal
-0.2
448
Normal
-0.2
864
Normal
-0.2
262
Normal
-0.2
617
Tumor
-0.2
368
Normal
-0.2
742
Normal
-0.2
745
Tumor
-0.2
874
Normal
-0.2
1042
Normal
-0.2
286
Normal
-0.2
416
Normal
-0.2
135
Tumor
-0.2
878
Normal
-0.2
911
Tumor
-0.2
298
Normal
-0.2
228
Normal
-0.2
628
Normal
-0.2
434
Normal
-0.2
272
Normal
-0.2
124
Normal
-0.2
636
Normal
-0.2
384
Normal
-0.2
258
Normal
-0.2
464
Normal
-0.2
1046
Normal
-0.2
882
Normal
-0.2
618
Normal
-0.2
698
Normal
-0.2
196
Normal
-0.2
615
Tumor
-0.2
136
Normal
-0.2
662
Normal
-0.2
111
Normal
-0.3
746
Normal
-0.3
138
Normal
-0.3
278
Normal
-0.3
1026
Normal
-0.3
1022
Normal
-0.3
558
Normal
-0.3
232
Normal
-0.3
664
Normal
-0.3
114
Normal
-0.3
466
Normal
-0.3
1044
Normal
-0.3
376
Normal
-0.3
557
Tumor
-0.3
642
Normal
-0.3
312
Normal
-0.3
314
Normal
-0.3
366
Normal
-0.3
648
Normal
-0.3
222
Normal
-0.3
128
Normal
-0.3
456
Normal
-0.3
914
Normal
-0.3
445
Tumor
-0.3
362
Normal
-0.3
666
Normal
-0.3
148
Normal
-0.3
572
Normal
-0.3
132
Normal
-0.3
428
Normal
-0.3
188
Normal
-0.3
426
Normal
-0.3
214
Normal
-0.3
162
Normal
-0.3
616
Normal
-0.3
468
Normal
-0.3
452
Normal
-0.4
574
Normal
-0.4
186
Normal
-0.4
627
Tumor
-0.4
424
Normal
-0.4
446
Normal
-0.4
172
Normal
-0.4
564
Normal
-0.4
436
Normal
-0.4
568
Normal
-0.4
422
Normal
-0.4
414
Normal
-0.5
432
Normal
-0.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
