MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:21.3 nTPM
HPA Brain:39.1 nTPM
GTEx:21.3 nTPM
FANTOM5:41.0 Scaled Tags Per Million
Pig:14.4 nTPM
Mouse:25.7 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 39.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 33.1
1827 Male, age 72, unknown 40.1
1870 Female, age 42, unknown 37.7
1833 Male, age 53, unknown 34.7
2411 Female, age 72, unknown 34.6
2586 Male, age 75, left hemisphere 33.7
1830 Male, age 51, unknown 32.4
2828 Female, age 72, unknown 30.7
2666 Male, age 74, left hemisphere 30.1
2019 Male, age 18, unknown 29.6
2219 Male, age 76, both hemispheres 27.7
Dorsal raphe nucleus
nTPM: 32.4
2016 Female, age 72, unknown 37.9
1828 Male, age 53, unknown 33.2
2047 Male, age 72, unknown 30.5
2298 Female, age 72, unknown 30.3
2750 Male, age 76, both hemispheres 30.0
Inferior colliculus
nTPM: 33.8
2849 Male, age 72, unknown 36.0
1848 Female, age 42, unknown 34.7
1890 Male, age 53, unknown 32.4
2097 Female, age 72, unknown 31.9
Median raphe nucleus
nTPM: 30.4
2220 Male, age 76, midline 30.4
Periaquaductal grey, anterior
nTPM: 33.5
1947 Male, age 18, unknown 35.9
2502 Female, age 75, unknown 33.3
1795 Male, age 51, unknown 31.1
Periaquaductal grey, dorsal
nTPM: 35.4
1840 Male, age 53, unknown 36.8
1831 Male, age 72, unknown 36.4
2850 Male, age 76, both hemispheres 35.5
2464 Female, age 72, unknown 33.1
Periaquaductal grey, lateral
nTPM: 34.0
2140 Male, age 76, both hemispheres 35.2
2272 Male, age 74, both hemispheres 34.0
2053 Male, age 18, unknown 32.9
Pretectal area
nTPM: 34.1
1815 Male, age 53, unknown 37.9
2273 Male, age 74, both hemispheres 36.9
1944 Female, age 72, unknown 36.7
2825 Male, age 18, unknown 36.2
2007 Male, age 72, unknown 35.4
1816 Male, age 51, unknown 35.0
1817 Female, age 42, unknown 34.0
2224 Female, age 72, unknown 32.3
2407 Male, age 75, both hemispheres 31.3
2667 Female, age 75, unknown 30.0
2316 Male, age 76, right hemisphere 29.5
Red nucleus
nTPM: 38.0
1865 Male, age 51, unknown 44.6
1821 Female, age 72, unknown 44.4
2588 Male, age 74, left hemisphere 43.1
2725 Female, age 75, unknown 41.1
2503 Female, age 72, unknown 39.7
1954 Female, age 42, unknown 38.1
1904 Male, age 53, unknown 37.5
2769 Male, age 72, unknown 35.5
2823 Male, age 76, right hemisphere 35.0
2785 Male, age 18, unknown 34.6
2227 Male, age 72, unknown 33.1
2584 Male, age 75, left hemisphere 29.0
Substantia nigra
nTPM: 39.1
2409 Female, age 72, unknown 56.4
2590 Female, age 75, unknown 47.8
2699 Male, age 18, unknown 41.7
1941 Male, age 53, unknown 39.0
1851 Male, age 51, unknown 38.0
1889 Female, age 72, unknown 35.3
1916 Female, age 42, unknown 34.7
2241 Male, age 72, unknown 33.1
2665 Male, age 74, both hemispheres 33.0
2583 Male, age 75, right hemisphere 31.7
Superior colliculus
nTPM: 33.6
1913 Female, age 42, unknown 37.3
2587 Male, age 74, left hemisphere 37.3
1895 Male, age 76, right hemisphere 36.2
1995 Male, age 72, unknown 35.9
2664 Male, age 75, both hemispheres 33.8
2261 Male, age 18, unknown 33.7
1839 Male, age 51, unknown 33.3
2087 Female, age 72, unknown 30.7
1796 Male, age 53, unknown 29.7
2668 Female, age 75, unknown 28.0
Ventral tegmental area
nTPM: 33.9
2410 Female, age 72, unknown 40.1
2223 Female, age 72, unknown 34.3
2218 Male, age 76, both hemispheres 34.1
1915 Female, age 42, unknown 32.8
2021 Male, age 53, unknown 31.3
1942 Male, age 51, unknown 30.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 21.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 21.3
Samples: 139

Max nTPM: 38.6
Min nTPM: 11.7
Std nTPM: 4.4
Median nTPM: 20.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 38.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 38.4
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 33.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 31.9
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 30.0
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 29.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 29.3
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 29.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 29.2
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 28.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 28.9
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 41.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 41.0
FF:10158-103A5 76 years, female 41.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 14.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 13.8
Samples: 4

Max nTPM: 14.7
Min nTPM: 12.3
Sample A Female 14.4
Sample B Female 13.6
Sample C Male 14.7
Sample D Male 12.3
Midbrain
nTPM: 14.1
Samples: 4

Max nTPM: 15.4
Min nTPM: 11.9
Sample A Female 15.4
Sample B Female 14.1
Sample C Male 11.9
Sample D Male 15.0
Periaqueductal gray
nTPM: 14.4
Samples: 3

Max nTPM: 15.8
Min nTPM: 13.4
Sample B Female 13.9
Sample C Male 15.8
Sample D Male 13.4
Superior colliculi
nTPM: 14.2
Samples: 4

Max nTPM: 14.5
Min nTPM: 13.9
Sample A Female 14.5
Sample B Female 13.9
Sample C Male 14.1
Sample D Male 14.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 25.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 25.7
Samples: 4

Max nTPM: 27.7
Min nTPM: 23.4
Sample A Male 23.4
Sample B Male 26.4
Sample C Female 27.7
Sample D Female 25.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
73424190 Antisense, RP_051019_03_D01, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org