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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PIK3AP1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
20.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
94.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
87.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
72.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
67.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
67.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
62.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
59.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
57.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
54.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
53.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
53.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
52.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
52.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
51.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
51.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
50.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
49.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
48.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
48.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
48.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
48.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
48.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
47.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
47.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
46.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
46.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
45.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
45.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
45.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
44.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
43.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
42.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
41.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
41.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
41.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
41.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
41.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
40.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
40.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
40.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
40.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
40.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
40.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
39.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
39.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
38.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
38.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
37.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
36.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
36.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
36.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
36.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
36.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
35.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
35.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
35.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
35.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
35.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
35.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
35.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
34.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
34.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
34.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
34.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
34.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
34.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
33.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
33.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
32.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
31.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
31.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
31.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
30.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
30.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
30.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
30.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
30.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
29.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
29.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
29.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
29.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
29.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
29.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
29.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
28.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
28.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
28.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
28.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
28.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
27.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
27.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
27.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
27.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
27.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
27.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
27.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
26.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
26.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
26.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
26.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
26.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
26.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
25.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
25.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
25.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
25.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
25.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
25.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
24.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
24.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
24.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
24.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
24.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
24.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
23.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
23.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
23.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
23.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
23.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
23.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
23.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
23.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
23.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
22.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
22.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
22.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
22.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
22.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
22.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
22.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
22.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
22.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
22.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
21.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
21.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
21.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
21.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
21.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
21.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
20.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
20.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
20.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
20.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
20.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
20.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
20.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
20.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
20.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
20.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
20.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
20.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
20.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
19.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
19.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
19.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
19.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
19.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
18.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
18.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
18.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
18.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
18.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
18.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
18.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
18.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
18.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
18.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
18.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
18.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
18.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
17.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
17.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
17.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
17.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
17.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
17.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
17.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
17.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
17.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
17.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
17.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
16.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
16.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
16.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
16.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
16.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
16.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
16.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
16.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
16.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
16.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
16.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
16.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
16.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
16.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
15.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
15.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
15.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
15.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
15.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
15.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
15.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
15.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
15.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
15.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
15.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
15.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
15.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
15.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
14.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
14.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
14.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
14.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
14.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
14.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
14.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
14.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
14.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
14.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
14.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
14.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
14.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
13.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
13.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
13.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
13.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
13.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
13.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
13.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
13.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
13.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
13.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
12.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
12.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
12.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
12.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
12.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
12.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
12.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
12.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
12.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
12.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
12.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
12.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
12.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
11.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
11.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
11.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
11.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
11.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
11.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
11.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
11.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
11.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
11.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
11.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
11.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
11.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
10.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
10.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
10.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
10.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
10.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
10.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
10.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
10.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
10.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
9.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
9.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
9.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
9.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
9.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
9.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
9.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
9.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
9.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
9.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
9.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
9.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
9.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
8.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
8.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
8.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
8.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
8.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
8.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
8.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
8.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
8.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
8.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
8.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
8.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
8.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
7.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
7.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
7.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
7.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
7.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
7.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
7.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
7.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
7.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
7.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
7.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
7.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
7.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
7.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
6.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
6.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
6.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
6.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
6.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
6.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
6.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
6.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
6.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
6.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
6.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
6.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
6.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
6.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
6.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
5.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
5.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
5.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
5.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
5.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
5.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
5.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
5.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
5.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
4.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
4.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
4.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
4.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
4.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
4.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
4.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
4.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
4.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
3.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
3.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
3.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
2.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
2.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
2.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
2.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
2.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
1.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PIK3AP1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
24.1
Number of samples
231
Samples
Sample
Description
TPM
DO45279
0 years, male, NA, stage:3, alive, 1290 days
177.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
92.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
85.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
80.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
74.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
68.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
66.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
61.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
57.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
56.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
56.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
54.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
54.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
53.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
52.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
51.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
51.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
50.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
50.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
49.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
48.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
46.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
45.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
45.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
44.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
44.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
43.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
43.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
42.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
42.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
41.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
41.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
40.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
40.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
39.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
39.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
39.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
38.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
38.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
38.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
38.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
38.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
37.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
36.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
36.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
36.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
35.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
35.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
34.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
34.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
34.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
33.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
33.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
33.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
32.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
32.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
32.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
31.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
31.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
31.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
31.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
30.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
30.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
30.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
29.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
28.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
28.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
28.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
27.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
27.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
27.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
27.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
27.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
26.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
26.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
26.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
26.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
26.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
26.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
26.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
25.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
25.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
25.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
25.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
25.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
25.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
24.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
24.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
24.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
23.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
23.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
22.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
22.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
22.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
22.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
22.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
22.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
22.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
21.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
21.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
21.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
21.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
21.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
20.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
20.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
20.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
20.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
19.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
19.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
19.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
19.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
19.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
19.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
19.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
18.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
18.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
18.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
18.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
18.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
18.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
18.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
18.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
18.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
18.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
17.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
17.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
17.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
17.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
17.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
17.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
17.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
17.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
17.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
17.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
17.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
16.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
16.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
16.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
16.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
16.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
16.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
15.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
15.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
15.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
15.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
15.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
15.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
15.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
15.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
15.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
15.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
14.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
14.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
14.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
13.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
13.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
13.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
13.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
13.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
13.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
13.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
13.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
13.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
12.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
12.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
12.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
12.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
12.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
12.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
12.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
12.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
12.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
12.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
12.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
11.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
11.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
11.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
11.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
11.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
11.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
11.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
11.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
11.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
11.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
10.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
10.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
10.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
10.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
10.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
10.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
9.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
9.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
9.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
9.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
9.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
9.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
9.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
9.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
9.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
9.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
8.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
8.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
7.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
7.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
7.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
7.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
7.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
7.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
7.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
7.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
6.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
6.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
6.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
6.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
6.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
6.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
5.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
4.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
4.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
4.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
4.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
4.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
4.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
4.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
4.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
4.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
3.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
3.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
3.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
3.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
3.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
925
Tumor
1.2
567
Tumor
0.9
125
Tumor
0.8
286
Normal
0.8
218
Normal
0.7
554
Normal
0.7
745
Tumor
0.7
1046
Normal
0.7
926
Normal
0.7
392
Normal
0.7
113
Tumor
0.7
558
Normal
0.6
696
Normal
0.6
368
Normal
0.6
636
Normal
0.6
523
Tumor
0.6
528
Normal
0.5
111
Normal
0.5
1016
Normal
0.5
186
Normal
0.5
1022
Normal
0.5
425
Tumor
0.5
1026
Normal
0.5
966
Normal
0.5
755
Tumor
0.5
467
Tumor
0.5
742
Normal
0.5
546
Normal
0.5
957
Tumor
0.5
147
Tumor
0.5
1045
Tumor
0.5
448
Normal
0.5
958
Normal
0.5
862
Normal
0.5
716
Normal
0.5
1044
Normal
0.4
686
Normal
0.4
1021
Tumor
0.4
568
Normal
0.4
435
Tumor
0.4
142
Normal
0.4
964
Normal
0.4
232
Normal
0.4
1014
Normal
0.4
922
Normal
0.4
533
Tumor
0.4
493
Tumor
0.4
518
Normal
0.4
698
Normal
0.4
124
Normal
0.4
955
Tumor
0.4
412
Normal
0.4
298
Normal
0.4
952
Normal
0.4
778
Normal
0.4
572
Normal
0.4
756
Normal
0.4
866
Normal
0.4
445
Tumor
0.4
923
Tumor
0.4
514
Normal
0.4
524
Normal
0.4
494
Normal
0.4
914
Normal
0.4
983
Tumor
0.4
526
Normal
0.3
723
Tumor
0.3
354
Normal
0.3
534
Normal
0.3
858
Normal
0.3
918
Normal
0.3
984
Normal
0.3
332
Normal
0.3
488
Normal
0.3
944
Normal
0.3
978
Normal
0.3
746
Normal
0.3
452
Normal
0.3
924
Normal
0.3
468
Normal
0.3
267
Tumor
0.3
1027
Tumor
0.3
536
Normal
0.3
738
Normal
0.3
714
Normal
0.3
616
Normal
0.3
824
Normal
0.3
873
Tumor
0.3
537
Tumor
0.3
228
Normal
0.3
912
Normal
0.3
352
Normal
0.3
396
Normal
0.3
358
Normal
0.3
114
Normal
0.3
196
Normal
0.3
462
Normal
0.3
131
Tumor
0.3
618
Normal
0.3
1032
Normal
0.3
818
Normal
0.3
456
Normal
0.3
982
Normal
0.3
574
Normal
0.3
376
Normal
0.3
662
Normal
0.3
666
Normal
0.3
262
Normal
0.2
664
Normal
0.2
1042
Normal
0.2
968
Normal
0.2
937
Tumor
0.2
956
Normal
0.2
878
Normal
0.2
421
Tumor
0.2
138
Normal
0.2
424
Normal
0.2
617
Tumor
0.2
148
Normal
0.2
394
Normal
0.2
414
Normal
0.2
728
Normal
0.2
258
Normal
0.2
191
Tumor
0.2
721
Tumor
0.2
786
Normal
0.2
224
Normal
0.2
882
Normal
0.2
864
Normal
0.2
642
Normal
0.2
214
Normal
0.2
1028
Normal
0.2
284
Normal
0.2
128
Normal
0.2
145
Tumor
0.2
222
Normal
0.2
388
Normal
0.2
816
Normal
0.2
525
Tumor
0.2
628
Normal
0.2
342
Normal
0.2
635
Tumor
0.2
823
Tumor
0.2
672
Normal
0.2
426
Normal
0.2
126
Normal
0.2
466
Normal
0.2
357
Tumor
0.2
484
Normal
0.2
695
Tumor
0.2
954
Normal
0.2
938
Normal
0.1
278
Normal
0.1
564
Normal
0.1
446
Normal
0.1
257
Tumor
0.1
722
Normal
0.1
963
Tumor
0.1
422
Normal
0.1
884
Normal
0.1
472
Normal
0.1
356
Normal
0.1
136
Normal
0.1
474
Normal
0.1
553
Tumor
0.1
386
Normal
0.1
463
Tumor
0.1
492
Normal
0.1
744
Normal
0.1
436
Normal
0.1
648
Normal
0.1
312
Normal
0.1
341
Tumor
0.1
852
Normal
0.1
478
Normal
0.1
344
Normal
0.1
277
Tumor
0.1
393
Tumor
0.1
538
Normal
0.1
443
Tumor
0.1
364
Normal
0.1
327
Tumor
0.1
416
Normal
0.1
384
Normal
0.1
146
Normal
0.0
391
Tumor
0.0
355
Tumor
0.0
916
Normal
0.0
428
Normal
0.0
851
Tumor
0.0
1043
Tumor
0.0
217
Tumor
0.0
212
Normal
0.0
498
Normal
0.0
162
Normal
0.0
663
Tumor
0.0
516
Normal
0.0
464
Normal
0.0
482
Normal
0.0
432
Normal
0.0
868
Normal
0.0
444
Normal
0.0
976
Normal
0.0
497
Tumor
0.0
915
Tumor
0.0
132
Normal
0.0
917
Tumor
-0.1
411
Tumor
-0.1
563
Tumor
-0.1
434
Normal
-0.1
362
Normal
-0.1
427
Tumor
-0.1
361
Tumor
-0.1
314
Normal
-0.1
517
Tumor
-0.1
366
Normal
-0.1
431
Tumor
-0.1
188
Normal
-0.1
447
Tumor
-0.1
127
Tumor
-0.1
187
Tumor
-0.1
297
Tumor
-0.1
272
Normal
-0.1
213
Tumor
-0.1
353
Tumor
-0.1
777
Tumor
-0.1
195
Tumor
-0.1
328
Normal
-0.1
455
Tumor
-0.1
857
Tumor
-0.2
874
Normal
-0.2
451
Tumor
-0.2
715
Tumor
-0.2
557
Tumor
-0.2
527
Tumor
-0.2
481
Tumor
-0.2
343
Tumor
-0.2
813
Tumor
-0.2
911
Tumor
-0.2
883
Tumor
-0.2
785
Tumor
-0.2
185
Tumor
-0.2
413
Tumor
-0.2
172
Normal
-0.2
573
Tumor
-0.2
271
Tumor
-0.2
483
Tumor
-0.3
953
Tumor
-0.3
1041
Tumor
-0.3
477
Tumor
-0.3
815
Tumor
-0.3
487
Tumor
-0.3
571
Tumor
-0.3
211
Tumor
-0.3
367
Tumor
-0.3
161
Tumor
-0.3
471
Tumor
-0.3
545
Tumor
-0.3
268
Normal
-0.3
415
Tumor
-0.3
461
Tumor
-0.3
1025
Tumor
-0.3
192
Normal
-0.3
231
Tumor
-0.3
661
Tumor
-0.4
112
Tumor
-0.4
123
Tumor
-0.4
867
Tumor
-0.4
814
Normal
-0.4
387
Tumor
-0.4
313
Tumor
-0.4
375
Tumor
-0.4
951
Tumor
-0.4
1031
Tumor
-0.4
491
Tumor
-0.4
647
Tumor
-0.4
515
Tumor
-0.5
975
Tumor
-0.5
223
Tumor
-0.5
423
Tumor
-0.5
977
Tumor
-0.5
861
Tumor
-0.5
615
Tumor
-0.5
433
Tumor
-0.5
135
Tumor
-0.5
331
Tumor
-0.5
137
Tumor
-0.5
713
Tumor
-0.5
743
Tumor
-0.5
913
Tumor
-0.5
727
Tumor
-0.5
383
Tumor
-0.5
311
Tumor
-0.5
737
Tumor
-0.5
865
Tumor
-0.6
395
Tumor
-0.6
881
Tumor
-0.6
921
Tumor
-0.6
1015
Tumor
-0.6
513
Tumor
-0.6
171
Tumor
-0.6
221
Tumor
-0.7
465
Tumor
-0.7
724
Normal
-0.7
685
Tumor
-0.7
697
Tumor
-0.7
943
Tumor
-0.7
741
Tumor
-0.7
261
Tumor
-0.7
141
Tumor
-0.8
1013
Tumor
-0.8
627
Tumor
-0.8
535
Tumor
-0.8
671
Tumor
-0.8
385
Tumor
-0.9
365
Tumor
-0.9
965
Tumor
-0.9
283
Tumor
-0.9
473
Tumor
-0.9
981
Tumor
-0.9
863
Tumor
-1.0
817
Tumor
-1.0
363
Tumor
-1.0
641
Tumor
-1.1
285
Tumor
-1.1
351
Tumor
-1.1
227
Tumor
-1.2
967
Tumor
-1.3
877
Tumor
-1.3
665
Tumor
-1.3
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.