MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1.7 nTPM
HPA Brain:14.9 nTPM
GTEx:1.7 nTPM
FANTOM5:33.2 Scaled Tags Per Million
Pig:11.3 nTPM
Mouse:7.8 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 14.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 13.6
1870 Female, age 42, unknown 15.3
2411 Female, age 72, unknown 15.0
1833 Male, age 53, unknown 14.3
1830 Male, age 51, unknown 13.8
2219 Male, age 76, both hemispheres 13.4
2666 Male, age 74, left hemisphere 13.4
2019 Male, age 18, unknown 13.3
2828 Female, age 72, unknown 13.2
1827 Male, age 72, unknown 13.0
2586 Male, age 75, left hemisphere 11.4
Dorsal raphe nucleus
nTPM: 14.9
2298 Female, age 72, unknown 16.2
2047 Male, age 72, unknown 15.1
2016 Female, age 72, unknown 14.9
1828 Male, age 53, unknown 14.5
2750 Male, age 76, both hemispheres 13.8
Inferior colliculus
nTPM: 14.2
1848 Female, age 42, unknown 15.5
1890 Male, age 53, unknown 14.1
2097 Female, age 72, unknown 13.8
2849 Male, age 72, unknown 13.3
Median raphe nucleus
nTPM: 13.2
2220 Male, age 76, midline 13.2
Periaquaductal grey, anterior
nTPM: 13.3
1947 Male, age 18, unknown 14.6
2502 Female, age 75, unknown 13.0
1795 Male, age 51, unknown 12.4
Periaquaductal grey, dorsal
nTPM: 14.6
2850 Male, age 76, both hemispheres 15.5
1840 Male, age 53, unknown 14.8
1831 Male, age 72, unknown 14.2
2464 Female, age 72, unknown 13.8
Periaquaductal grey, lateral
nTPM: 14.1
2140 Male, age 76, both hemispheres 15.6
2053 Male, age 18, unknown 13.9
2272 Male, age 74, both hemispheres 12.9
Pretectal area
nTPM: 13.1
2316 Male, age 76, right hemisphere 14.8
2224 Female, age 72, unknown 14.2
2825 Male, age 18, unknown 13.9
2273 Male, age 74, both hemispheres 13.4
2407 Male, age 75, both hemispheres 13.1
2007 Male, age 72, unknown 12.9
2667 Female, age 75, unknown 12.9
1817 Female, age 42, unknown 12.6
1816 Male, age 51, unknown 12.2
1944 Female, age 72, unknown 12.2
1815 Male, age 53, unknown 12.0
Red nucleus
nTPM: 13.6
2503 Female, age 72, unknown 15.4
1821 Female, age 72, unknown 14.6
1954 Female, age 42, unknown 14.4
1865 Male, age 51, unknown 13.7
2725 Female, age 75, unknown 13.7
2227 Male, age 72, unknown 13.6
1904 Male, age 53, unknown 13.5
2823 Male, age 76, right hemisphere 13.4
2588 Male, age 74, left hemisphere 13.3
2769 Male, age 72, unknown 13.3
2785 Male, age 18, unknown 13.1
2584 Male, age 75, left hemisphere 11.5
Substantia nigra
nTPM: 14.4
2241 Male, age 72, unknown 16.6
1941 Male, age 53, unknown 15.9
1851 Male, age 51, unknown 14.6
2590 Female, age 75, unknown 14.6
1916 Female, age 42, unknown 14.4
2699 Male, age 18, unknown 14.2
2665 Male, age 74, both hemispheres 13.9
2583 Male, age 75, right hemisphere 13.4
1889 Female, age 72, unknown 13.2
2409 Female, age 72, unknown 12.7
Superior colliculus
nTPM: 13.2
1839 Male, age 51, unknown 14.9
2587 Male, age 74, left hemisphere 14.1
1913 Female, age 42, unknown 13.9
1895 Male, age 76, right hemisphere 13.7
2668 Female, age 75, unknown 13.3
1796 Male, age 53, unknown 13.2
1995 Male, age 72, unknown 13.2
2087 Female, age 72, unknown 12.8
2261 Male, age 18, unknown 12.3
2664 Male, age 75, both hemispheres 11.0
Ventral tegmental area
nTPM: 14.0
2410 Female, age 72, unknown 15.2
1915 Female, age 42, unknown 14.7
2218 Male, age 76, both hemispheres 14.0
1942 Male, age 51, unknown 13.6
2021 Male, age 53, unknown 13.2
2223 Female, age 72, unknown 13.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 1.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1.7
Samples: 139

Max nTPM: 4.0
Min nTPM: 0.1
Std nTPM: 0.8
Median nTPM: 1.7
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 4.0
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 3.7
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 3.5
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 3.4
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 3.4
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 3.3
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 3.2
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 3.2
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 3.1
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 3.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 3.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 33.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 33.2
FF:10158-103A5 76 years, female 33.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 11.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 9.3
Samples: 4

Max nTPM: 11.0
Min nTPM: 8.4
Sample A Female 8.7
Sample B Female 11.0
Sample C Male 8.4
Sample D Male 9.2
Midbrain
nTPM: 9.0
Samples: 4

Max nTPM: 11.7
Min nTPM: 7.8
Sample A Female 7.8
Sample B Female 11.7
Sample C Male 7.9
Sample D Male 8.7
Periaqueductal gray
nTPM: 11.3
Samples: 3

Max nTPM: 13.1
Min nTPM: 10.2
Sample B Female 13.1
Sample C Male 10.2
Sample D Male 10.5
Superior colliculi
nTPM: 10.1
Samples: 4

Max nTPM: 13.8
Min nTPM: 8.5
Sample A Female 8.9
Sample B Female 13.8
Sample C Male 8.5
Sample D Male 9.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 7.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 7.9
Samples: 4

Max nTPM: 8.2
Min nTPM: 7.2
Sample A Male 7.2
Sample B Male 8.2
Sample C Female 7.9
Sample D Female 8.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
77799011 Antisense, RP_070212_03_B11, Mouse strain C57BL/6J (56 days, male) 0.3
71234692 Antisense, RP_050505_03_B03, Mouse strain C57BL/6J (56 days, male) 0.0

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