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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RHOC is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
213.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
1182.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
756.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
753.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
704.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
664.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
622.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
613.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
605.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
592.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
520.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
520.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
512.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
504.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
496.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
473.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
466.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
451.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
451.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
430.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
423.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
418.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
408.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
400.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
399.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
390.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
383.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
379.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
376.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
371.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
369.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
368.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
367.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
363.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
346.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
346.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
345.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
343.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
341.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
336.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
335.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
334.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
332.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
332.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
332.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
327.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
326.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
326.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
324.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
321.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
321.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
317.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
315.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
315.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
314.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
313.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
311.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
311.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
310.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
309.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
309.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
309.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
307.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
303.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
303.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
300.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
300.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
300.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
294.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
294.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
292.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
288.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
287.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
287.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
286.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
285.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
284.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
283.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
281.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
278.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
275.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
272.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
269.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
269.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
267.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
265.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
260.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
259.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
259.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
258.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
256.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
255.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
254.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
253.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
248.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
246.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
244.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
243.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
242.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
241.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
240.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
238.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
238.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
238.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
236.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
235.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
234.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
233.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
232.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
231.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
231.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
229.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
229.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
227.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
227.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
224.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
224.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
223.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
223.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
222.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
222.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
221.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
221.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
220.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
220.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
219.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
219.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
218.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
216.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
216.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
215.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
214.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
212.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
211.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
211.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
211.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
211.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
209.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
209.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
207.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
207.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
207.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
206.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
205.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
205.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
205.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
205.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
203.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
202.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
202.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
202.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
201.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
201.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
200.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
200.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
200.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
198.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
197.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
196.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
195.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
195.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
194.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
194.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
194.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
193.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
193.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
193.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
192.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
191.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
190.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
190.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
189.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
189.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
189.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
188.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
188.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
188.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
187.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
186.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
185.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
184.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
184.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
184.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
183.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
183.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
183.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
182.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
182.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
182.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
181.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
181.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
180.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
179.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
178.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
178.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
177.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
177.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
177.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
177.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
176.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
176.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
176.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
174.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
173.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
171.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
170.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
170.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
170.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
169.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
169.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
168.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
168.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
168.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
167.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
166.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
166.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
165.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
164.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
163.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
163.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
163.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
163.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
163.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
162.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
162.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
161.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
160.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
160.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
160.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
159.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
158.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
158.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
157.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
156.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
156.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
156.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
156.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
154.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
153.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
153.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
153.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
153.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
153.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
152.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
152.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
151.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
151.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
150.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
149.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
148.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
147.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
144.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
144.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
144.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
144.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
143.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
142.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
141.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
141.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
141.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
141.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
140.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
140.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
140.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
139.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
138.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
138.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
137.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
137.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
137.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
136.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
136.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
134.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
134.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
133.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
133.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
133.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
132.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
132.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
131.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
130.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
130.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
130.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
130.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
128.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
127.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
127.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
127.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
127.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
127.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
127.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
126.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
125.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
125.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
124.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
124.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
122.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
120.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
120.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
119.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
116.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
115.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
115.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
114.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
113.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
113.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
111.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
111.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
111.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
111.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
110.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
110.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
110.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
110.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
109.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
109.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
109.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
109.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
109.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
107.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
107.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
107.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
106.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
106.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
106.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
104.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
103.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
103.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
102.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
102.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
101.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
101.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
98.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
95.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
95.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
93.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
91.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
91.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
91.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
90.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
90.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
90.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
82.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
82.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
82.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
75.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
74.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
73.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
73.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
71.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
71.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
70.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
69.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
69.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
67.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
67.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
66.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
64.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
63.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
58.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
56.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
50.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RHOC is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
133.1
Number of samples
231
Samples
Sample
Description
TPM
DO45303
0 years, female, NA, stage:3, alive, 990 days
464.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
462.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
390.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
374.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
364.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
359.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
357.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
328.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
313.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
307.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
293.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
291.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
283.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
278.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
271.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
263.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
258.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
253.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
252.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
251.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
251.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
250.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
244.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
241.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
239.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
224.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
224.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
223.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
223.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
222.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
216.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
216.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
216.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
215.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
215.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
209.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
208.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
200.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
198.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
196.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
193.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
192.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
191.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
190.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
190.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
189.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
187.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
186.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
182.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
182.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
182.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
179.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
171.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
171.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
171.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
168.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
168.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
165.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
164.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
163.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
162.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
161.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
160.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
160.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
159.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
159.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
159.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
157.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
153.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
150.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
150.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
149.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
148.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
147.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
147.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
146.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
144.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
140.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
138.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
138.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
138.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
137.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
136.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
136.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
135.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
133.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
133.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
133.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
132.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
131.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
131.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
130.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
128.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
127.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
127.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
126.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
126.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
126.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
126.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
125.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
125.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
124.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
121.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
119.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
118.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
117.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
116.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
116.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
115.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
115.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
115.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
115.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
114.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
113.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
113.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
112.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
112.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
112.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
110.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
109.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
109.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
109.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
108.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
108.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
108.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
108.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
107.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
107.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
107.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
105.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
105.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
105.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
105.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
105.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
104.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
103.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
103.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
103.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
101.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
100.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
100.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
98.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
98.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
96.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
96.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
96.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
96.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
96.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
95.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
93.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
93.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
92.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
92.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
92.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
91.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
89.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
88.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
88.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
88.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
87.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
85.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
85.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
85.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
84.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
83.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
83.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
82.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
82.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
80.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
77.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
76.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
76.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
76.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
75.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
75.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
74.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
74.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
74.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
74.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
71.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
70.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
69.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
68.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
67.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
67.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
65.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
65.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
64.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
64.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
64.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
64.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
63.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
62.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
62.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
61.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
61.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
61.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
60.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
58.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
58.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
58.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
58.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
57.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
57.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
57.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
57.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
56.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
54.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
54.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
53.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
53.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
52.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
52.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
52.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
51.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
50.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
49.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
49.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
48.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
47.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
46.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
45.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
44.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
42.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
40.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
39.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
38.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
30.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
30.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
28.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
17.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1027
Tumor
0.6
741
Tumor
0.4
125
Tumor
0.4
147
Tumor
0.3
257
Tumor
0.3
375
Tumor
0.3
477
Tumor
0.3
311
Tumor
0.3
925
Tumor
0.3
745
Tumor
0.3
283
Tumor
0.3
533
Tumor
0.2
465
Tumor
0.2
421
Tumor
0.2
342
Normal
0.2
851
Tumor
0.2
361
Tumor
0.2
423
Tumor
0.2
491
Tumor
0.2
124
Normal
0.1
917
Tumor
0.1
387
Tumor
0.1
538
Normal
0.1
823
Tumor
0.1
137
Tumor
0.1
327
Tumor
0.1
685
Tumor
0.1
343
Tumor
0.1
344
Normal
0.1
435
Tumor
0.1
145
Tumor
0.1
455
Tumor
0.1
172
Normal
0.1
878
Normal
0.1
914
Normal
0.1
393
Tumor
0.1
1028
Normal
0.1
395
Tumor
0.1
135
Tumor
0.1
464
Normal
0.1
223
Tumor
0.1
268
Normal
0.1
744
Normal
0.1
185
Tumor
0.1
813
Tumor
0.1
123
Tumor
0.1
525
Tumor
0.1
366
Normal
0.1
957
Tumor
0.1
365
Tumor
0.1
188
Normal
0.1
953
Tumor
0.1
162
Normal
0.1
146
Normal
0.1
966
Normal
0.0
392
Normal
0.0
456
Normal
0.0
434
Normal
0.0
383
Tumor
0.0
368
Normal
0.0
386
Normal
0.0
138
Normal
0.0
913
Tumor
0.0
422
Normal
0.0
433
Tumor
0.0
492
Normal
0.0
923
Tumor
0.0
483
Tumor
0.0
411
Tumor
0.0
278
Normal
0.0
376
Normal
0.0
362
Normal
0.0
981
Tumor
0.0
452
Normal
0.0
816
Normal
0.0
857
Tumor
0.0
272
Normal
0.0
445
Tumor
0.0
171
Tumor
0.0
921
Tumor
0.0
161
Tumor
0.0
313
Tumor
0.0
436
Normal
0.0
355
Tumor
0.0
213
Tumor
0.0
527
Tumor
0.0
192
Normal
0.0
431
Tumor
0.0
428
Normal
0.0
463
Tumor
0.0
567
Tumor
0.0
924
Normal
0.0
258
Normal
0.0
186
Normal
0.0
444
Normal
0.0
214
Normal
0.0
697
Tumor
0.0
262
Normal
0.0
737
Tumor
0.0
426
Normal
0.0
468
Normal
0.0
1013
Tumor
0.0
467
Tumor
0.0
727
Tumor
0.0
142
Normal
-0.1
746
Normal
-0.1
443
Tumor
-0.1
738
Normal
-0.1
222
Normal
-0.1
271
Tumor
-0.1
128
Normal
-0.1
132
Normal
-0.1
413
Tumor
-0.1
922
Normal
-0.1
883
Tumor
-0.1
312
Normal
-0.1
414
Normal
-0.1
817
Tumor
-0.1
952
Normal
-0.1
647
Tumor
-0.1
388
Normal
-0.1
394
Normal
-0.1
396
Normal
-0.1
451
Tumor
-0.1
536
Normal
-0.1
695
Tumor
-0.1
111
Normal
-0.1
557
Tumor
-0.1
126
Normal
-0.1
277
Tumor
-0.1
432
Normal
-0.1
755
Tumor
-0.1
778
Normal
-0.1
513
Tumor
-0.1
367
Tumor
-0.1
141
Tumor
-0.1
227
Tumor
-0.1
977
Tumor
-0.1
777
Tumor
-0.1
425
Tumor
-0.1
424
Normal
-0.1
615
Tumor
-0.1
635
Tumor
-0.1
814
Normal
-0.1
642
Normal
-0.1
861
Tumor
-0.1
955
Tumor
-0.1
114
Normal
-0.1
493
Tumor
-0.1
112
Tumor
-0.1
412
Normal
-0.1
1045
Tumor
-0.1
427
Tumor
-0.1
553
Tumor
-0.1
298
Normal
-0.1
196
Normal
-0.1
228
Normal
-0.1
627
Tumor
-0.1
211
Tumor
-0.1
358
Normal
-0.1
1043
Tumor
-0.1
466
Normal
-0.1
911
Tumor
-0.1
713
Tumor
-0.1
515
Tumor
-0.1
148
Normal
-0.1
357
Tumor
-0.1
474
Normal
-0.1
447
Tumor
-0.1
261
Tumor
-0.1
187
Tumor
-0.1
218
Normal
-0.1
874
Normal
-0.2
873
Tumor
-0.2
446
Normal
-0.2
384
Normal
-0.2
956
Normal
-0.2
297
Tumor
-0.2
461
Tumor
-0.2
976
Normal
-0.2
136
Normal
-0.2
916
Normal
-0.2
487
Tumor
-0.2
363
Tumor
-0.2
341
Tumor
-0.2
975
Tumor
-0.2
328
Normal
-0.2
231
Tumor
-0.2
217
Tumor
-0.2
881
Tumor
-0.2
867
Tumor
-0.2
728
Normal
-0.2
663
Tumor
-0.2
563
Tumor
-0.2
661
Tumor
-0.2
662
Normal
-0.2
1025
Tumor
-0.2
416
Normal
-0.2
715
Tumor
-0.2
498
Normal
-0.2
1026
Normal
-0.2
926
Normal
-0.2
968
Normal
-0.2
364
Normal
-0.2
518
Normal
-0.2
648
Normal
-0.2
232
Normal
-0.2
537
Tumor
-0.2
1021
Tumor
-0.2
573
Tumor
-0.2
982
Normal
-0.2
815
Tumor
-0.2
943
Tumor
-0.2
352
Normal
-0.2
618
Normal
-0.2
497
Tumor
-0.2
554
Normal
-0.2
354
Normal
-0.2
484
Normal
-0.2
918
Normal
-0.2
127
Tumor
-0.2
865
Tumor
-0.2
462
Normal
-0.2
742
Normal
-0.2
448
Normal
-0.2
963
Tumor
-0.2
472
Normal
-0.2
385
Tumor
-0.2
516
Normal
-0.2
721
Tumor
-0.2
545
Tumor
-0.2
877
Tumor
-0.2
1041
Tumor
-0.2
391
Tumor
-0.2
286
Normal
-0.2
482
Normal
-0.2
356
Normal
-0.2
415
Tumor
-0.2
224
Normal
-0.2
671
Tumor
-0.3
284
Normal
-0.3
546
Normal
-0.3
488
Normal
-0.3
1015
Tumor
-0.3
915
Tumor
-0.3
698
Normal
-0.3
481
Tumor
-0.3
983
Tumor
-0.3
852
Normal
-0.3
937
Tumor
-0.3
523
Tumor
-0.3
131
Tumor
-0.3
785
Tumor
-0.3
686
Normal
-0.3
526
Normal
-0.3
195
Tumor
-0.3
212
Normal
-0.3
824
Normal
-0.3
478
Normal
-0.3
1016
Normal
-0.3
332
Normal
-0.3
221
Tumor
-0.3
494
Normal
-0.3
938
Normal
-0.3
724
Normal
-0.3
882
Normal
-0.3
617
Tumor
-0.3
666
Normal
-0.3
353
Tumor
-0.3
858
Normal
-0.3
964
Normal
-0.3
471
Tumor
-0.3
535
Tumor
-0.3
534
Normal
-0.3
1031
Tumor
-0.3
636
Normal
-0.4
723
Tumor
-0.4
716
Normal
-0.4
954
Normal
-0.4
285
Tumor
-0.4
664
Normal
-0.4
113
Tumor
-0.4
524
Normal
-0.4
967
Tumor
-0.4
351
Tumor
-0.4
267
Tumor
-0.4
958
Normal
-0.4
574
Normal
-0.4
314
Normal
-0.4
528
Normal
-0.4
1022
Normal
-0.4
984
Normal
-0.4
571
Tumor
-0.4
696
Normal
-0.4
944
Normal
-0.4
672
Normal
-0.4
568
Normal
-0.4
884
Normal
-0.4
1014
Normal
-0.4
951
Tumor
-0.4
628
Normal
-0.4
714
Normal
-0.4
1044
Normal
-0.4
722
Normal
-0.4
564
Normal
-0.4
818
Normal
-0.4
616
Normal
-0.4
862
Normal
-0.5
864
Normal
-0.5
191
Tumor
-0.5
517
Tumor
-0.5
978
Normal
-0.5
786
Normal
-0.5
1032
Normal
-0.5
665
Tumor
-0.5
756
Normal
-0.5
866
Normal
-0.5
965
Tumor
-0.5
331
Tumor
-0.5
1042
Normal
-0.5
912
Normal
-0.5
868
Normal
-0.5
641
Tumor
-0.6
572
Normal
-0.6
473
Tumor
-0.6
514
Normal
-0.6
743
Tumor
-0.6
863
Tumor
-0.6
558
Normal
-0.7
1046
Normal
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.