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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MMS19 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
34.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
32.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
31.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
31.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
30.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
30.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
29.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
28.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
28.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
27.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
26.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
26.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
26.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
25.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
24.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
24.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
24.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
24.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
23.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
23.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
23.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
23.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
23.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
22.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
22.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
22.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
22.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
22.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
22.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
21.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
21.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
20.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
20.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
20.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
20.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
20.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
20.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
20.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
20.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
20.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
20.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
19.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
19.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
19.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
19.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
19.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
19.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
19.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
19.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
19.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
19.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
19.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
19.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
19.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
19.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
19.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
19.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
19.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
18.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
18.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
18.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
18.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
18.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
18.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
18.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
18.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
17.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
17.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
17.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
17.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
17.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
17.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
17.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
17.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
16.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
16.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
16.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
16.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
16.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
16.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
16.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
16.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
16.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
16.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
15.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
15.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
15.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
15.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
15.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
15.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
15.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
15.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
15.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
15.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
15.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
15.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
15.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
15.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
15.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
15.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
15.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
15.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
15.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
15.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
15.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
14.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
14.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
14.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
14.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
14.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
14.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
14.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
14.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
14.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
14.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
14.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
14.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
14.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
14.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
14.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
14.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
14.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
14.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
14.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
14.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
14.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
14.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
13.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
13.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
13.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
13.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
13.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
13.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
13.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
13.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
13.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
13.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
13.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
13.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
13.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
13.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
13.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
12.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
12.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
12.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
12.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
12.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
12.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
12.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
12.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
12.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
12.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
12.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
12.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
12.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
12.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
12.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
12.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
12.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
12.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
12.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
12.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
12.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
12.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
12.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
11.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
11.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
11.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
11.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
11.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
11.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
11.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
11.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
11.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
11.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
11.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
11.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
11.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
11.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
11.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
11.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
11.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
11.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
11.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
11.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
11.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
11.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
11.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
11.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
10.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
10.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
10.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
10.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
10.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
10.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
10.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
10.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
10.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
10.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
10.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
10.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
10.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
10.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
10.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
10.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
10.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
10.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
10.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
10.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
10.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
10.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
10.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
10.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
10.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
10.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
9.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
9.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
9.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
9.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
9.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
9.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
9.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
9.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
9.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
9.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
9.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
9.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
9.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
9.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
9.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
9.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
9.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
9.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
9.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
9.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
9.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
9.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
9.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
9.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
9.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
9.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
9.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
9.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
9.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
9.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
9.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
9.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
9.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
9.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
9.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
9.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
9.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
9.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
9.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
9.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
9.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
8.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
8.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
8.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
8.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
8.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
8.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
8.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
8.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
8.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
8.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
8.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
8.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
8.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
8.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
8.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
8.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
8.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
8.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
8.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
8.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
8.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
8.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
8.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
8.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
8.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
8.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
8.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
8.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
8.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
8.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
7.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
7.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
7.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
7.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
7.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
7.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
7.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
7.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
7.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
7.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
7.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
7.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
7.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
7.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
7.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
7.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
7.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
7.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
7.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
7.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
7.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
7.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
7.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
6.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
6.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
6.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
6.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
6.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
6.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
6.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
6.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
6.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
6.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
6.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
6.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
6.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
6.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
6.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
6.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
6.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
6.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
6.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
5.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
5.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
5.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
5.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
5.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
5.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
5.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
5.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
5.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
4.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
4.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
4.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
4.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
3.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MMS19 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.7
Number of samples
231
Samples
Sample
Description
TPM
DO45307
0 years, female, NA, stage:4, dead, 240 days
27.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
25.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
23.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
22.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
22.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
22.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
22.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
21.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
21.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
21.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
20.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
20.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
20.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
20.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
20.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
19.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
19.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
19.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
18.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
18.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
18.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
18.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
18.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
17.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
17.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
17.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
17.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
17.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
17.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
17.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
17.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
17.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
16.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
16.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
16.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
16.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
16.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
16.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
16.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
16.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
15.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
15.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
15.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
15.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
15.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
15.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
15.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
15.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
15.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
15.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
15.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
15.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
15.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
15.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
14.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
14.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
14.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
14.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
14.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
14.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
14.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
14.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
14.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
14.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
14.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
14.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
14.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
14.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
14.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
14.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
14.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
14.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
14.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
13.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
13.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
13.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
13.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
13.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
13.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
13.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
13.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
12.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
12.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
12.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
12.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
12.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
12.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
12.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
12.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
12.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
12.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
12.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
12.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
12.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
12.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
12.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
12.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
12.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
12.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
12.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
12.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
11.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
11.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
11.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
11.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
11.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
11.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
11.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
11.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
11.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
11.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
11.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
11.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
11.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
11.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
11.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
11.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
11.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
11.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
11.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
11.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
10.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
10.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
10.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
10.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
10.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
10.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
10.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
10.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
10.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
10.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
10.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
10.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
10.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
10.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
9.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
9.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
9.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
9.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
9.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
9.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
9.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
9.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
9.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
9.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
9.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
9.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
9.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
9.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
9.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
9.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
9.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
9.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
9.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
9.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
9.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
9.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
9.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
9.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
9.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
9.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
9.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
9.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
8.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
8.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
8.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
8.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
8.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
8.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
8.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
8.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
8.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
8.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
8.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
8.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
8.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
8.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
7.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
7.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
7.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
7.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
7.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
7.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
7.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
7.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
7.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
7.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
7.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
7.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
7.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
7.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
7.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
7.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
7.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
6.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
6.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
6.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
6.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
6.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
6.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
6.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
6.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
6.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
6.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
6.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
6.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
6.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
6.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
6.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
6.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
5.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
5.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
5.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
5.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
5.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
5.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
5.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
5.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
5.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
4.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
4.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
4.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
3.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
3.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
2.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
123
Tumor
1.2
967
Tumor
0.9
567
Tumor
0.8
331
Tumor
0.7
125
Tumor
0.7
387
Tumor
0.6
685
Tumor
0.6
391
Tumor
0.6
351
Tumor
0.6
661
Tumor
0.6
271
Tumor
0.6
965
Tumor
0.6
435
Tumor
0.6
815
Tumor
0.6
147
Tumor
0.6
1025
Tumor
0.6
741
Tumor
0.5
367
Tumor
0.4
743
Tumor
0.4
671
Tumor
0.4
267
Tumor
0.4
363
Tumor
0.4
635
Tumor
0.4
413
Tumor
0.4
983
Tumor
0.4
1021
Tumor
0.4
221
Tumor
0.4
231
Tumor
0.4
1045
Tumor
0.3
127
Tumor
0.3
537
Tumor
0.3
285
Tumor
0.3
257
Tumor
0.3
171
Tumor
0.3
357
Tumor
0.3
431
Tumor
0.3
227
Tumor
0.3
185
Tumor
0.3
385
Tumor
0.3
921
Tumor
0.2
361
Tumor
0.2
571
Tumor
0.2
353
Tumor
0.2
132
Normal
0.2
877
Tumor
0.2
617
Tumor
0.2
126
Normal
0.2
428
Normal
0.2
465
Tumor
0.2
136
Normal
0.2
297
Tumor
0.2
911
Tumor
0.2
1031
Tumor
0.2
393
Tumor
0.2
881
Tumor
0.2
354
Normal
0.2
131
Tumor
0.2
342
Normal
0.2
341
Tumor
0.2
641
Tumor
0.2
1043
Tumor
0.2
124
Normal
0.1
424
Normal
0.1
272
Normal
0.1
222
Normal
0.1
232
Normal
0.1
311
Tumor
0.1
388
Normal
0.1
277
Tumor
0.1
817
Tumor
0.1
477
Tumor
0.1
471
Tumor
0.1
258
Normal
0.1
146
Normal
0.1
128
Normal
0.1
464
Normal
0.1
196
Normal
0.1
213
Tumor
0.1
436
Normal
0.1
445
Tumor
0.1
553
Tumor
0.1
663
Tumor
0.1
951
Tumor
0.1
135
Tumor
0.1
262
Normal
0.1
352
Normal
0.1
755
Tumor
0.1
186
Normal
0.1
145
Tumor
0.1
742
Normal
0.1
217
Tumor
0.1
313
Tumor
0.1
425
Tumor
0.1
426
Normal
0.1
278
Normal
0.1
443
Tumor
0.1
114
Normal
0.1
113
Tumor
0.1
466
Normal
0.1
192
Normal
0.1
395
Tumor
0.1
923
Tumor
0.1
664
Normal
0.1
432
Normal
0.1
344
Normal
0.1
573
Tumor
0.1
672
Normal
0.1
362
Normal
0.1
517
Tumor
0.1
723
Tumor
0.1
111
Normal
0.1
394
Normal
0.1
616
Normal
0.1
422
Normal
0.1
112
Tumor
0.1
695
Tumor
0.1
455
Tumor
0.1
648
Normal
0.1
1027
Tumor
0.1
214
Normal
0.1
414
Normal
0.1
355
Tumor
0.1
138
Normal
0.1
463
Tumor
0.1
456
Normal
0.0
665
Tumor
0.0
433
Tumor
0.0
715
Tumor
0.0
396
Normal
0.0
1041
Tumor
0.0
191
Tumor
0.0
738
Normal
0.0
618
Normal
0.0
533
Tumor
0.0
366
Normal
0.0
1022
Normal
0.0
642
Normal
0.0
392
Normal
0.0
312
Normal
0.0
914
Normal
0.0
187
Tumor
0.0
662
Normal
0.0
148
Normal
0.0
411
Tumor
0.0
724
Normal
0.0
343
Tumor
0.0
452
Normal
0.0
446
Normal
0.0
386
Normal
0.0
666
Normal
0.0
851
Tumor
0.0
636
Normal
0.0
468
Normal
0.0
218
Normal
0.0
356
Normal
0.0
421
Tumor
0.0
376
Normal
0.0
557
Tumor
0.0
786
Normal
0.0
447
Tumor
0.0
955
Tumor
0.0
746
Normal
0.0
358
Normal
0.0
162
Normal
0.0
756
Normal
0.0
534
Normal
0.0
647
Tumor
0.0
824
Normal
0.0
434
Normal
0.0
416
Normal
0.0
535
Tumor
0.0
314
Normal
0.0
1032
Normal
0.0
188
Normal
0.0
384
Normal
0.0
912
Normal
0.0
867
Tumor
0.0
172
Normal
0.0
564
Normal
0.0
298
Normal
0.0
713
Tumor
0.0
444
Normal
0.0
814
Normal
0.0
462
Normal
0.0
722
Normal
0.0
223
Tumor
0.0
883
Tumor
0.0
818
Normal
0.0
283
Tumor
0.0
628
Normal
0.0
813
Tumor
0.0
727
Tumor
0.0
368
Normal
0.0
1042
Normal
0.0
332
Normal
-0.1
427
Tumor
-0.1
1026
Normal
-0.1
261
Tumor
-0.1
546
Normal
-0.1
268
Normal
-0.1
873
Tumor
-0.1
745
Tumor
-0.1
481
Tumor
-0.1
328
Normal
-0.1
858
Normal
-0.1
482
Normal
-0.1
568
Normal
-0.1
523
Tumor
-0.1
467
Tumor
-0.1
195
Tumor
-0.1
963
Tumor
-0.1
868
Normal
-0.1
956
Normal
-0.1
528
Normal
-0.1
137
Tumor
-0.1
375
Tumor
-0.1
862
Normal
-0.1
474
Normal
-0.1
744
Normal
-0.1
1028
Normal
-0.1
284
Normal
-0.1
953
Tumor
-0.1
864
Normal
-0.1
737
Tumor
-0.1
563
Tumor
-0.1
142
Normal
-0.1
472
Normal
-0.1
861
Tumor
-0.1
866
Normal
-0.1
228
Normal
-0.1
874
Normal
-0.1
224
Normal
-0.1
882
Normal
-0.1
525
Tumor
-0.1
1046
Normal
-0.1
686
Normal
-0.1
952
Normal
-0.2
696
Normal
-0.2
412
Normal
-0.2
778
Normal
-0.2
574
Normal
-0.2
448
Normal
-0.2
498
Normal
-0.2
518
Normal
-0.2
451
Tumor
-0.2
785
Tumor
-0.2
364
Normal
-0.2
944
Normal
-0.2
473
Tumor
-0.2
141
Tumor
-0.2
615
Tumor
-0.2
697
Tumor
-0.2
924
Normal
-0.2
493
Tumor
-0.2
714
Normal
-0.2
975
Tumor
-0.2
494
Normal
-0.2
878
Normal
-0.2
977
Tumor
-0.2
558
Normal
-0.2
816
Normal
-0.2
852
Normal
-0.2
1044
Normal
-0.2
484
Normal
-0.2
572
Normal
-0.2
728
Normal
-0.2
286
Normal
-0.2
884
Normal
-0.2
627
Tumor
-0.2
488
Normal
-0.2
365
Tumor
-0.2
918
Normal
-0.2
1016
Normal
-0.2
917
Tumor
-0.2
491
Tumor
-0.2
922
Normal
-0.2
926
Normal
-0.2
964
Normal
-0.2
957
Tumor
-0.2
526
Normal
-0.2
721
Tumor
-0.2
383
Tumor
-0.2
978
Normal
-0.2
966
Normal
-0.2
716
Normal
-0.2
976
Normal
-0.2
423
Tumor
-0.2
478
Normal
-0.2
698
Normal
-0.2
1014
Normal
-0.3
954
Normal
-0.3
161
Tumor
-0.3
916
Normal
-0.3
925
Tumor
-0.3
938
Normal
-0.3
514
Normal
-0.3
516
Normal
-0.3
915
Tumor
-0.3
536
Normal
-0.3
981
Tumor
-0.3
497
Tumor
-0.3
545
Tumor
-0.3
492
Normal
-0.3
461
Tumor
-0.3
483
Tumor
-0.3
984
Normal
-0.3
982
Normal
-0.3
968
Normal
-0.3
212
Normal
-0.3
958
Normal
-0.3
554
Normal
-0.3
538
Normal
-0.4
937
Tumor
-0.4
415
Tumor
-0.4
327
Tumor
-0.4
865
Tumor
-0.4
211
Tumor
-0.4
913
Tumor
-0.4
857
Tumor
-0.4
487
Tumor
-0.4
777
Tumor
-0.5
524
Normal
-0.5
515
Tumor
-0.5
823
Tumor
-0.5
1015
Tumor
-0.5
513
Tumor
-0.5
527
Tumor
-0.5
863
Tumor
-0.5
943
Tumor
-0.6
1013
Tumor
-0.6
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
