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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GTF3C6 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
53.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
228.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
197.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
172.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
169.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
158.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
148.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
145.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
140.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
133.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
133.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
132.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
129.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
125.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
123.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
122.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
108.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
107.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
106.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
106.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
105.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
105.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
104.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
103.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
103.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
103.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
102.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
101.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
100.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
99.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
99.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
98.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
98.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
98.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
97.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
97.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
96.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
96.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
95.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
92.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
91.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
90.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
90.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
89.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
89.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
89.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
89.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
87.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
86.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
85.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
85.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
84.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
83.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
83.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
83.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
82.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
80.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
80.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
79.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
78.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
78.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
77.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
77.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
77.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
77.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
76.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
76.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
75.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
73.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
73.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
73.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
72.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
72.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
72.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
71.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
71.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
70.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
70.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
70.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
70.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
70.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
68.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
68.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
68.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
68.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
67.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
67.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
67.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
67.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
66.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
66.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
66.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
66.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
66.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
66.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
66.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
65.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
65.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
65.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
64.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
63.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
63.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
63.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
63.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
62.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
62.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
60.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
60.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
60.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
60.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
60.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
59.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
59.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
58.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
58.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
57.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
57.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
57.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
57.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
56.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
56.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
56.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
56.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
56.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
56.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
55.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
55.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
55.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
55.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
54.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
54.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
54.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
54.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
53.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
53.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
53.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
53.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
53.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
53.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
53.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
52.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
52.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
52.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
52.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
51.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
51.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
51.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
51.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
51.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
51.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
51.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
50.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
50.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
50.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
50.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
49.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
49.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
49.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
49.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
48.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
48.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
48.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
48.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
48.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
47.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
47.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
47.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
47.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
47.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
47.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
47.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
47.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
47.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
46.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
46.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
46.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
46.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
46.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
46.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
46.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
45.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
45.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
45.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
44.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
44.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
44.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
44.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
44.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
44.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
43.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
43.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
43.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
43.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
42.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
42.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
42.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
42.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
42.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
41.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
41.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
41.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
41.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
41.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
41.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
41.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
41.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
40.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
40.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
40.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
40.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
40.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
40.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
40.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
40.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
40.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
40.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
40.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
40.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
40.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
39.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
39.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
39.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
39.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
39.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
39.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
39.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
39.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
38.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
38.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
38.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
38.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
38.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
38.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
38.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
37.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
37.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
37.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
37.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
36.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
36.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
36.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
36.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
36.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
36.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
36.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
35.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
35.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
35.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
35.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
35.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
34.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
34.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
34.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
34.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
34.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
34.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
34.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
33.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
33.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
33.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
33.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
33.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
32.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
32.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
32.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
32.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
32.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
32.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
32.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
32.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
32.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
31.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
31.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
31.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
31.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
31.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
31.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
31.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
31.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
31.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
31.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
30.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
30.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
30.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
30.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
30.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
30.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
30.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
30.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
30.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
29.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
29.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
28.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
28.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
28.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
28.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
28.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
27.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
27.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
27.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
27.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
27.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
27.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
27.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
27.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
27.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
27.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
26.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
26.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
26.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
26.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
26.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
26.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
26.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
25.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
25.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
25.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
25.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
25.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
25.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
25.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
25.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
24.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
24.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
24.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
24.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
24.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
23.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
23.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
23.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
23.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
23.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
22.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
22.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
22.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
22.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
22.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
21.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
21.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
21.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
20.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
20.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
20.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
20.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
20.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
19.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
19.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
19.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
18.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
18.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
17.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
17.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
17.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
16.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
16.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
15.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
15.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
14.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
14.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
13.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
13.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
13.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GTF3C6 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
38.3
Number of samples
231
Samples
Sample
Description
TPM
DO50778
0 years, male, NA, stage:4, alive, 630 days
292.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
232.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
160.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
118.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
106.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
95.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
94.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
92.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
89.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
88.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
88.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
86.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
83.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
82.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
82.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
80.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
79.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
76.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
75.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
71.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
69.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
69.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
67.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
67.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
66.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
65.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
65.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
64.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
63.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
60.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
59.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
57.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
57.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
55.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
55.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
54.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
54.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
53.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
52.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
50.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
49.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
49.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
49.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
49.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
48.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
48.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
48.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
47.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
47.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
47.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
47.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
46.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
46.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
46.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
44.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
43.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
43.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
43.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
43.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
43.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
42.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
41.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
41.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
41.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
41.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
41.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
41.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
40.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
40.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
40.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
39.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
39.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
39.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
39.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
39.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
39.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
38.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
38.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
38.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
38.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
38.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
37.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
37.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
37.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
36.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
36.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
36.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
36.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
36.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
36.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
36.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
35.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
35.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
35.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
34.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
34.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
34.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
34.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
34.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
33.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
33.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
33.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
33.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
33.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
33.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
32.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
32.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
32.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
32.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
32.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
32.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
32.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
31.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
31.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
31.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
31.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
31.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
30.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
30.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
30.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
30.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
30.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
30.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
30.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
30.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
29.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
29.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
29.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
29.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
29.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
29.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
28.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
28.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
28.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
28.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
28.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
28.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
27.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
27.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
27.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
27.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
26.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
26.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
26.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
25.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
25.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
25.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
25.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
25.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
25.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
25.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
25.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
25.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
24.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
24.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
24.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
24.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
24.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
24.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
24.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
23.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
23.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
23.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
23.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
23.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
23.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
23.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
23.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
22.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
22.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
22.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
22.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
22.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
22.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
22.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
22.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
22.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
21.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
21.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
21.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
21.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
21.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
20.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
20.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
20.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
20.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
20.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
20.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
20.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
20.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
19.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
19.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
19.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
19.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
19.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
19.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
18.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
18.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
18.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
18.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
18.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
18.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
18.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
18.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
17.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
17.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
17.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
16.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
16.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
15.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
15.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
15.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
15.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
14.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
14.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
14.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
14.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
13.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
13.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
13.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
13.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
13.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
12.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
12.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
11.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
10.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
9.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
9.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
8.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
8.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
7.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
965
Tumor
1.5
497
Tumor
1.2
967
Tumor
1.1
957
Tumor
1.0
533
Tumor
1.0
427
Tumor
0.9
661
Tumor
0.9
473
Tumor
0.8
413
Tumor
0.8
923
Tumor
0.8
411
Tumor
0.8
953
Tumor
0.7
525
Tumor
0.7
477
Tumor
0.7
943
Tumor
0.7
491
Tumor
0.7
355
Tumor
0.7
351
Tumor
0.7
425
Tumor
0.7
737
Tumor
0.7
357
Tumor
0.7
131
Tumor
0.6
267
Tumor
0.6
1013
Tumor
0.6
298
Normal
0.6
535
Tumor
0.6
465
Tumor
0.6
391
Tumor
0.6
951
Tumor
0.6
981
Tumor
0.6
663
Tumor
0.5
447
Tumor
0.5
1021
Tumor
0.5
343
Tumor
0.5
524
Normal
0.5
697
Tumor
0.5
983
Tumor
0.5
921
Tumor
0.5
571
Tumor
0.5
741
Tumor
0.5
777
Tumor
0.5
925
Tumor
0.5
917
Tumor
0.5
537
Tumor
0.5
341
Tumor
0.5
695
Tumor
0.5
963
Tumor
0.5
461
Tumor
0.5
724
Normal
0.4
817
Tumor
0.4
516
Normal
0.4
463
Tumor
0.4
498
Normal
0.4
387
Tumor
0.4
487
Tumor
0.4
545
Tumor
0.4
944
Normal
0.4
367
Tumor
0.4
471
Tumor
0.4
815
Tumor
0.3
743
Tumor
0.3
283
Tumor
0.3
211
Tumor
0.3
515
Tumor
0.3
975
Tumor
0.3
478
Normal
0.3
977
Tumor
0.3
271
Tumor
0.3
536
Normal
0.3
445
Tumor
0.3
493
Tumor
0.3
484
Normal
0.3
647
Tumor
0.3
1045
Tumor
0.3
231
Tumor
0.3
966
Normal
0.3
1031
Tumor
0.3
526
Normal
0.3
567
Tumor
0.3
455
Tumor
0.3
738
Normal
0.3
514
Normal
0.3
958
Normal
0.3
937
Tumor
0.3
513
Tumor
0.2
954
Normal
0.2
553
Tumor
0.2
483
Tumor
0.2
641
Tumor
0.2
361
Tumor
0.2
141
Tumor
0.2
415
Tumor
0.2
313
Tumor
0.2
518
Normal
0.2
433
Tumor
0.2
311
Tumor
0.2
285
Tumor
0.2
161
Tumor
0.2
227
Tumor
0.2
383
Tumor
0.2
332
Normal
0.2
423
Tumor
0.2
488
Normal
0.2
232
Normal
0.2
742
Normal
0.2
861
Tumor
0.2
286
Normal
0.2
924
Normal
0.2
221
Tumor
0.1
727
Tumor
0.1
284
Normal
0.1
261
Tumor
0.1
964
Normal
0.1
874
Normal
0.1
365
Tumor
0.1
435
Tumor
0.1
492
Normal
0.1
224
Normal
0.1
258
Normal
0.1
494
Normal
0.1
745
Tumor
0.1
1015
Tumor
0.1
938
Normal
0.1
268
Normal
0.1
865
Tumor
0.1
446
Normal
0.1
451
Tumor
0.1
573
Tumor
0.1
277
Tumor
0.1
328
Normal
0.1
517
Tumor
0.1
873
Tumor
0.1
554
Normal
0.1
331
Tumor
0.1
728
Normal
0.1
916
Normal
0.1
262
Normal
0.1
272
Normal
0.1
327
Tumor
0.1
867
Tumor
0.1
723
Tumor
0.1
217
Tumor
0.1
968
Normal
0.0
866
Normal
0.0
444
Normal
0.0
257
Tumor
0.0
568
Normal
0.0
364
Normal
0.0
978
Normal
0.0
228
Normal
0.0
823
Tumor
0.0
1014
Normal
0.0
558
Normal
0.0
467
Tumor
0.0
918
Normal
0.0
755
Tumor
0.0
137
Tumor
0.0
863
Tumor
0.0
956
Normal
0.0
297
Tumor
0.0
432
Normal
0.0
314
Normal
0.0
474
Normal
0.0
813
Tumor
0.0
412
Normal
0.0
857
Tumor
0.0
862
Normal
0.0
472
Normal
0.0
721
Tumor
0.0
648
Normal
0.0
713
Tumor
0.0
482
Normal
0.0
852
Normal
0.0
468
Normal
0.0
982
Normal
0.0
395
Tumor
0.0
353
Tumor
0.0
212
Normal
-0.1
434
Normal
-0.1
642
Normal
-0.1
385
Tumor
-0.1
416
Normal
-0.1
375
Tumor
-0.1
564
Normal
-0.1
344
Normal
-0.1
976
Normal
-0.1
671
Tumor
-0.1
785
Tumor
-0.1
955
Tumor
-0.1
665
Tumor
-0.1
915
Tumor
-0.1
922
Normal
-0.1
223
Tumor
-0.1
523
Tumor
-0.1
851
Tumor
-0.1
138
Normal
-0.1
662
Normal
-0.1
436
Normal
-0.1
462
Normal
-0.1
666
Normal
-0.1
814
Normal
-0.1
456
Normal
-0.1
145
Tumor
-0.1
926
Normal
-0.1
352
Normal
-0.1
563
Tumor
-0.1
864
Normal
-0.1
722
Normal
-0.1
354
Normal
-0.1
466
Normal
-0.1
984
Normal
-0.1
744
Normal
-0.1
672
Normal
-0.1
192
Normal
-0.1
422
Normal
-0.1
356
Normal
-0.1
858
Normal
-0.1
546
Normal
-0.1
696
Normal
-0.1
664
Normal
-0.1
452
Normal
-0.1
527
Tumor
-0.1
572
Normal
-0.1
187
Tumor
-0.2
534
Normal
-0.2
714
Normal
-0.2
135
Tumor
-0.2
132
Normal
-0.2
213
Tumor
-0.2
868
Normal
-0.2
816
Normal
-0.2
756
Normal
-0.2
685
Tumor
-0.2
686
Normal
-0.2
424
Normal
-0.2
538
Normal
-0.2
363
Tumor
-0.2
142
Normal
-0.2
191
Tumor
-0.2
824
Normal
-0.2
358
Normal
-0.2
1041
Tumor
-0.2
574
Normal
-0.2
716
Normal
-0.2
386
Normal
-0.2
1026
Normal
-0.2
715
Tumor
-0.2
384
Normal
-0.2
746
Normal
-0.2
428
Normal
-0.2
636
Normal
-0.2
952
Normal
-0.2
147
Tumor
-0.2
368
Normal
-0.2
1028
Normal
-0.3
222
Normal
-0.3
786
Normal
-0.3
431
Tumor
-0.3
362
Normal
-0.3
1032
Normal
-0.3
426
Normal
-0.3
278
Normal
-0.3
778
Normal
-0.3
171
Tumor
-0.3
136
Normal
-0.3
185
Tumor
-0.3
443
Tumor
-0.3
414
Normal
-0.3
146
Normal
-0.3
818
Normal
-0.3
195
Tumor
-0.3
396
Normal
-0.3
421
Tumor
-0.3
464
Normal
-0.3
1016
Normal
-0.3
627
Tumor
-0.3
698
Normal
-0.3
342
Normal
-0.3
214
Normal
-0.3
617
Tumor
-0.3
388
Normal
-0.4
366
Normal
-0.4
628
Normal
-0.4
448
Normal
-0.4
615
Tumor
-0.4
312
Normal
-0.4
393
Tumor
-0.4
557
Tumor
-0.4
392
Normal
-0.4
1044
Normal
-0.4
616
Normal
-0.4
1046
Normal
-0.4
528
Normal
-0.5
218
Normal
-0.5
376
Normal
-0.5
1042
Normal
-0.5
188
Normal
-0.5
618
Normal
-0.5
186
Normal
-0.5
394
Normal
-0.6
1022
Normal
-0.6
1025
Tumor
-0.6
148
Normal
-0.6
196
Normal
-0.6
481
Tumor
-0.6
162
Normal
-0.7
1043
Tumor
-0.7
635
Tumor
-0.8
172
Normal
-0.9
1027
Tumor
-0.9
111
Normal
N/A
112
Tumor
N/A
113
Tumor
N/A
114
Normal
N/A
911
Tumor
N/A
912
Normal
N/A
913
Tumor
N/A
914
Normal
N/A
123
Tumor
N/A
124
Normal
N/A
125
Tumor
N/A
126
Normal
N/A
127
Tumor
N/A
128
Normal
N/A
877
Tumor
N/A
878
Normal
N/A
881
Tumor
N/A
882
Normal
N/A
883
Tumor
N/A
884
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
