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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ATP5PF is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
309.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A25T-01A
45 years, female, white, stage:Stage IIIA, alive, 1553 days
677.2
TCGA-G3-A5SI-01A
44 years, male, asian, stage:Stage II, dead, 768 days
669.6
TCGA-DD-A3A5-01A
66 years, female, white, stage:Stage III, dead, 3125 days
603.9
TCGA-MI-A75G-01A
63 years, male, white, stage:Stage II, alive, 698 days
599.3
TCGA-DD-A73B-01A
72 years, female, white, stage:Stage I, dead, 283 days
591.2
TCGA-ED-A82E-01A
60 years, female, asian, stage:Stage IIIA, alive, 408 days
574.3
TCGA-2Y-A9HA-01A
70 years, male, white, stage:Stage II, dead, 36 days
570.0
TCGA-DD-A118-01A
77 years, female, white, stage:Stage II, alive, 3437 days
557.2
TCGA-DD-AACF-01A
68 years, male, asian, stage:Stage I, dead, 365 days
540.4
TCGA-BW-A5NO-01A
50 years, male, black or african american, stage:Stage IIIA, alive, 20 days
536.0
TCGA-ED-A7PZ-01A
61 years, male, asian, stage:Stage II, alive, 6 days
534.1
TCGA-2Y-A9GU-01A
55 years, female, white, stage:Stage I, alive, 1939 days
527.4
TCGA-CC-A8HS-01A
18 years, male, asian, stage:Stage IIIC, dead, 300 days
526.7
TCGA-5C-A9VG-01A
58 years, male, white, stage:Stage II, alive, 328 days
514.5
TCGA-UB-A7MB-01A
24 years, male, white, stage:Stage II, alive, 601 days
510.8
TCGA-CC-A5UC-01A
63 years, male, asian, stage:Stage IIIA, dead, 347 days
507.5
TCGA-NI-A4U2-01A
71 years, male, white, stage:Stage IIIA, dead, 1791 days
507.0
TCGA-QA-A7B7-01A
48 years, male, black or african american, stage:Stage II, alive, 94 days
502.5
TCGA-DD-AADJ-01A
70 years, female, asian, stage:Stage I, alive, 1066 days
501.2
TCGA-DD-AADS-01A
63 years, male, asian, stage:Stage I, alive, 474 days
499.5
TCGA-RC-A7SB-01A
53 years, male, asian, stage:Stage II, alive, 588 days
494.0
TCGA-G3-A7M9-01A
70 years, male, white, stage:Stage IIIB, dead, 56 days
486.0
TCGA-FV-A495-01A
51 years, female, white, stage:Stage II, alive, 1 days
479.3
TCGA-BC-A3KG-01A
68 years, female, white, stage:Stage II, alive, 680 days
474.2
TCGA-CC-A3MC-01A
54 years, male, asian, stage:Stage IIIA, alive, 363 days
473.9
TCGA-DD-A11B-01A
73 years, male, white, stage:Stage I, dead, 14 days
472.5
TCGA-DD-A113-01A
55 years, female, white, stage:Stage II, alive, 2425 days
467.5
TCGA-RC-A7SK-01A
59 years, male, asian, stage:Stage I, alive, 472 days
464.8
TCGA-G3-A7M5-01A
76 years, male, asian, stage:Stage I, alive, 447 days
464.6
TCGA-DD-AACO-01A
40 years, male, asian, stage:Stage I, alive, 1876 days
460.3
TCGA-DD-A73C-01A
65 years, female, white, stage:Stage IIIA, alive, 701 days
456.5
TCGA-DD-AADI-01A
43 years, female, asian, stage:Stage I, alive, 1085 days
455.8
TCGA-CC-A8HU-01A
39 years, female, asian, stage:Stage IIIA, dead, 344 days
454.8
TCGA-2Y-A9H4-01A
68 years, male, black or african american, stage:Stage I, alive, 1452 days
449.5
TCGA-DD-AADM-01A
58 years, male, asian, stage:Stage II, dead, 12 days
449.2
TCGA-BC-A3KF-01A
66 years, female, white, stage:Stage I, alive, 8 days
446.7
TCGA-BC-A10Z-01A
62 years, female, white, stage:Stage I, dead, 34 days
445.7
TCGA-CC-A7IG-01A
47 years, male, asian, stage:Stage II, dead, 299 days
444.4
TCGA-ZS-A9CE-01A
79 years, female, white, stage:Stage II, alive, 1241 days
444.4
TCGA-UB-A7MF-01A
56 years, male, white, stage:Stage IIIA, dead, 214 days
442.2
TCGA-G3-A25Y-01A
52 years, female, asian, stage:Stage I, dead, 452 days
437.9
TCGA-RC-A7S9-01A
47 years, female, asian, stage:Stage I, alive, 640 days
432.7
TCGA-G3-AAUZ-01A
48 years, male, stage:Stage I, alive, 480 days
430.7
TCGA-DD-AAVU-01A
46 years, male, asian, stage:Stage II, alive, 2202 days
430.6
TCGA-G3-A7M7-01A
65 years, male, white, stage:Stage I, alive, 361 days
430.3
TCGA-DD-AADR-01A
58 years, male, asian, stage:Stage I, alive, 2028 days
429.5
TCGA-2Y-A9H8-01A
85 years, female, white, stage:'--, dead, 633 days
427.6
TCGA-DD-AAEH-01A
73 years, male, asian, stage:Stage I, alive, 784 days
425.0
TCGA-ES-A2HS-01A
80 years, male, white, stage:Stage I, dead, 688 days
424.2
TCGA-DD-A11C-01A
69 years, male, white, stage:Stage I, alive, 662 days
423.3
TCGA-G3-AAV7-01A
38 years, male, asian, stage:Stage II, alive, 361 days
423.2
TCGA-FV-A2QQ-01A
80 years, male, white, stage:Stage I, alive, 729 days
422.0
TCGA-G3-A5SM-01A
58 years, male, white, stage:Stage II, alive, 520 days
419.7
TCGA-DD-A39X-01A
78 years, female, white, stage:Stage I, dead, 1694 days
417.9
TCGA-ED-A7PY-01A
20 years, female, asian, stage:Stage II, alive, 390 days
417.7
TCGA-DD-AACL-01A
66 years, female, asian, stage:Stage I, dead, 107 days
412.1
TCGA-BD-A2L6-01A
69 years, male, white, stage:'--, alive, 1363 days
411.6
TCGA-FV-A3R2-01A
75 years, male, white, stage:Stage I, dead, 194 days
411.1
TCGA-MR-A520-01A
58 years, male, white, stage:Stage I, alive, 229 days
410.3
TCGA-DD-A4NN-01A
56 years, female, white, stage:Stage I, dead, 899 days
410.3
TCGA-CC-A5UE-01A
48 years, male, asian, stage:Stage IIIB, dead, 272 days
408.8
TCGA-DD-AAVP-01A
48 years, male, asian, stage:Stage I, alive, 2752 days
408.4
TCGA-DD-AAEG-01A
59 years, female, asian, stage:Stage I, alive, 719 days
407.3
TCGA-G3-A25Z-01A
58 years, male, asian, stage:Stage I, alive, 655 days
407.2
TCGA-CC-A7IF-01A
59 years, male, asian, stage:Stage IIIA, dead, 649 days
406.8
TCGA-DD-AAE9-01A
69 years, male, asian, stage:Stage I, alive, 722 days
406.8
TCGA-BC-A10S-01A
81 years, male, white, stage:'--, dead, 1423 days
406.0
TCGA-DD-AAE4-01A
49 years, female, asian, stage:Stage I, alive, 608 days
405.5
TCGA-DD-A4NO-01A
65 years, male, white, stage:Stage I, alive, 2245 days
405.2
TCGA-DD-AACW-01A
43 years, male, asian, stage:Stage I, alive, 1424 days
404.8
TCGA-WQ-AB4B-01A
62 years, male, white, stage:Stage II, alive, 395 days
403.4
TCGA-G3-A5SK-01A
58 years, male, white, stage:Stage I, alive, 744 days
403.4
TCGA-CC-A9FS-01A
55 years, male, asian, stage:Stage II, alive, 211 days
403.3
TCGA-G3-A25X-01A
73 years, male, asian, stage:Stage II, alive, 1779 days
403.2
TCGA-DD-AACV-01A
53 years, male, asian, stage:Stage I, alive, 1531 days
403.0
TCGA-KR-A7K0-01A
65 years, male, white, stage:Stage I, dead, 65 days
400.7
TCGA-EP-A2KB-01A
46 years, female, white, stage:Stage I, dead, 596 days
398.5
TCGA-K7-A6G5-01A
66 years, male, white, stage:Stage I, alive, 512 days
396.8
TCGA-DD-A4NF-01A
72 years, male, white, stage:Stage I, alive, 942 days
393.9
TCGA-MI-A75C-01A
64 years, male, white, stage:Stage I, alive, 291 days
392.8
TCGA-CC-A8HT-01A
74 years, male, asian, stage:Stage IIIA, dead, 140 days
388.1
TCGA-ED-A7XO-01A
29 years, male, asian, stage:Stage IIIA, alive, 427 days
387.0
TCGA-DD-AAVW-01A
35 years, male, asian, stage:Stage I, alive, 2317 days
383.5
TCGA-G3-A3CH-01A
53 years, male, asian, stage:Stage IIIA, alive, 780 days
382.5
TCGA-XR-A8TC-01A
43 years, female, white, stage:Stage I, alive, 1339 days
382.1
TCGA-G3-A3CJ-01A
52 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
381.9
TCGA-CC-A7IH-01A
58 years, male, asian, stage:Stage IIIA, alive, 365 days
381.7
TCGA-DD-AAVR-01A
44 years, male, asian, stage:Stage I, alive, 2513 days
380.9
TCGA-BC-A10Y-01A
76 years, male, white, stage:'--, dead, 711 days
380.7
TCGA-FV-A2QR-01A
75 years, male, white, stage:Stage I, dead, 581 days
378.6
TCGA-MI-A75I-01A
61 years, male, black or african american, stage:'--, alive, 630 days
378.6
TCGA-DD-A39Z-01A
43 years, female, stage:Stage II, dead, 601 days
375.6
TCGA-DD-A73G-01A
73 years, female, white, stage:Stage I, alive, 3478 days
374.8
TCGA-DD-A4NV-01A
61 years, male, white, stage:Stage IIIA, alive, 2398 days
374.5
TCGA-CC-5261-01A
44 years, male, asian, stage:Stage II, dead, 97 days
371.5
TCGA-ZS-A9CG-01A
55 years, male, white, stage:Stage II, alive, 341 days
371.1
TCGA-DD-AADG-01A
70 years, male, asian, stage:Stage IIIA, alive, 1145 days
368.5
TCGA-DD-AAEA-01A
65 years, male, asian, stage:Stage I, alive, 575 days
367.7
TCGA-BC-A217-01A
75 years, female, white, stage:Stage II, dead, 1397 days
367.4
TCGA-BC-A10Q-01A
72 years, female, white, stage:'--, dead, 1135 days
366.9
TCGA-DD-AADF-01A
64 years, female, asian, stage:Stage I, dead, 115 days
366.9
TCGA-ZP-A9D0-01A
67 years, female, black or african american, stage:'--, alive, 1091 days
365.8
TCGA-DD-AADV-01A
50 years, male, asian, stage:Stage I, alive, 574 days
365.6
TCGA-MI-A75H-01A
77 years, male, white, stage:'--, alive, 747 days
363.9
TCGA-LG-A9QC-01A
48 years, male, white, stage:Stage I, alive, 425 days
362.7
TCGA-2Y-A9H3-01A
45 years, male, white, stage:Stage II, alive, 1516 days
361.8
TCGA-GJ-A9DB-01A
68 years, male, white, stage:Stage I, dead, 67 days
360.7
TCGA-2Y-A9H9-01A
70 years, male, white, stage:Stage I, alive, 697 days
360.5
TCGA-DD-AAW0-01A
54 years, male, asian, stage:Stage I, alive, 2015 days
360.2
TCGA-PD-A5DF-01A
58 years, female, white, stage:Stage IIIB, dead, 639 days
359.8
TCGA-DD-AAEK-01A
51 years, male, asian, stage:Stage II, alive, 1067 days
359.2
TCGA-5R-AAAM-01A
65 years, female, white, stage:Stage II, dead, 46 days
359.1
TCGA-RC-A6M5-01A
20 years, female, white, stage:Stage IVA, alive, 15 days
358.6
TCGA-DD-A4NA-01A
67 years, female, white, stage:Stage IIIC, alive, 1008 days
355.9
TCGA-CC-A7IL-01A
61 years, male, asian, stage:Stage IIIA, dead, 278 days
354.7
TCGA-O8-A75V-01A
54 years, male, stage:Stage I, alive, 538 days
354.7
TCGA-DD-AADW-01A
48 years, male, asian, stage:Stage I, alive, 587 days
353.6
TCGA-ES-A2HT-01A
54 years, male, black or african american, stage:Stage I, dead, 438 days
353.0
TCGA-ZP-A9CZ-01A
72 years, male, asian, stage:'--, alive, 706 days
352.9
TCGA-DD-A4NE-01A
75 years, female, white, stage:Stage IIIA, dead, 660 days
352.5
TCGA-DD-AAVZ-01A
38 years, male, asian, stage:Stage I, alive, 1900 days
351.9
TCGA-DD-AAE0-01A
45 years, female, asian, stage:Stage IIIA, alive, 555 days
351.3
TCGA-G3-AAV5-01A
67 years, male, white, stage:Stage II, alive, 354 days
350.5
TCGA-4R-AA8I-01A
66 years, male, white, stage:Stage II, dead, 262 days
350.2
TCGA-XR-A8TD-01A
49 years, female, white, stage:Stage IIIB, alive, 1030 days
350.1
TCGA-BC-A10T-01A
76 years, male, white, stage:'--, dead, 837 days
349.4
TCGA-2Y-A9H7-01A
81 years, female, white, stage:Stage I, alive, 1168 days
348.6
TCGA-DD-A73F-01A
77 years, female, white, stage:Stage I, alive, 1085 days
348.3
TCGA-2Y-A9GS-01A
58 years, male, white, stage:'--, dead, 724 days
347.2
TCGA-G3-A25U-01A
63 years, female, asian, stage:Stage I, alive, 1636 days
347.0
TCGA-DD-AAD5-01A
54 years, male, asian, stage:Stage I, alive, 1345 days
346.7
TCGA-K7-A5RF-01A
64 years, male, white, stage:Stage I, alive, 631 days
344.9
TCGA-DD-A3A8-01A
75 years, male, white, stage:Stage II, dead, 11 days
344.8
TCGA-DD-AACH-01A
69 years, male, asian, stage:Stage II, dead, 195 days
343.7
TCGA-DD-AACX-01A
66 years, male, asian, stage:Stage II, alive, 170 days
340.4
TCGA-BC-A10W-01A
50 years, male, asian, stage:'--, dead, 91 days
336.9
TCGA-DD-AADB-01A
51 years, male, asian, stage:Stage I, alive, 1242 days
335.9
TCGA-5C-AAPD-01A
61 years, male, asian, stage:Stage II, alive, 20 days
335.0
TCGA-2Y-A9H6-01A
68 years, female, white, stage:Stage I, alive, 357 days
334.2
TCGA-KR-A7K2-01A
64 years, male, white, stage:Stage I, alive, 829 days
333.9
TCGA-DD-AADL-01A
58 years, male, asian, stage:Stage I, alive, 636 days
333.6
TCGA-DD-AAE1-01A
52 years, male, asian, stage:Stage I, alive, 552 days
331.8
TCGA-DD-A1EB-01A
72 years, female, stage:Stage I, alive, 2017 days
331.6
TCGA-DD-AAEB-01A
60 years, male, asian, stage:Stage I, alive, 478 days
330.5
TCGA-ZP-A9D2-01A
51 years, male, white, stage:'--, dead, 765 days
329.9
TCGA-T1-A6J8-01A
68 years, male, white, stage:'--, alive, 23 days
329.3
TCGA-G3-A3CG-01A
80 years, male, white, stage:Stage I, alive, 673 days
329.1
TCGA-DD-A116-01A
68 years, male, asian, stage:Stage IIIA, dead, 1622 days
328.2
TCGA-G3-A25V-01A
68 years, male, white, stage:Stage I, alive, 860 days
327.8
TCGA-DD-AAD3-01A
43 years, male, asian, stage:Stage I, alive, 1295 days
327.7
TCGA-ZP-A9CY-01A
66 years, female, white, stage:'--, alive, 782 days
327.6
TCGA-DD-A4NH-01A
65 years, female, white, stage:Stage IIIB, alive, 917 days
327.5
TCGA-WX-AA47-01A
33 years, female, white, stage:Stage IIIA, dead, 556 days
327.0
TCGA-G3-AAV0-01A
58 years, male, asian, stage:Stage I, alive, 476 days
326.7
TCGA-ED-A7XP-01A
53 years, female, asian, stage:Stage II, alive, 400 days
326.4
TCGA-DD-AAE3-01A
50 years, male, asian, stage:Stage I, alive, 566 days
325.8
TCGA-3K-AAZ8-01A
65 years, male, black or african american, stage:Stage IIIB, alive, 396 days
324.4
TCGA-G3-A3CI-01A
71 years, male, white, stage:Stage I, alive, 180 days
322.0
TCGA-DD-AACK-01A
70 years, male, asian, stage:Stage I, alive, 9 days
321.5
TCGA-DD-AAW1-01A
55 years, male, asian, stage:Stage IIIA, alive, 1989 days
319.0
TCGA-ED-A4XI-01A
58 years, male, asian, stage:Stage II, alive, 819 days
317.0
TCGA-DD-A4NQ-01A
60 years, male, white, stage:Stage II, dead, 373 days
316.9
TCGA-BC-A10X-01A
52 years, female, white, stage:Stage IIIA, dead, 770 days
315.9
TCGA-FV-A3I0-01A
76 years, female, white, stage:Stage II, alive, 848 days
315.3
TCGA-RC-A6M4-01A
74 years, female, white, stage:Stage IIIA, alive, 22 days
313.2
TCGA-UB-A7MD-01A
67 years, male, black or african american, stage:Stage I, dead, 52 days
313.2
TCGA-DD-AACC-01A
61 years, male, asian, stage:Stage I, dead, 1685 days
313.2
TCGA-G3-A7M8-01A
31 years, male, asian, stage:Stage I, alive, 430 days
310.8
TCGA-UB-AA0U-01A
60 years, male, white, stage:Stage II, alive, 327 days
308.8
TCGA-DD-AAD0-01A
73 years, female, asian, stage:Stage I, alive, 137 days
308.8
TCGA-DD-A119-01A
40 years, male, asian, stage:Stage IV, dead, 223 days
307.8
TCGA-CC-5263-01A
35 years, male, asian, stage:Stage IIIA, dead, 129 days
306.7
TCGA-DD-A1EI-01A
46 years, male, asian, stage:Stage I, alive, 183 days
306.5
TCGA-DD-A4ND-01A
56 years, female, white, stage:Stage I, alive, 2746 days
306.5
TCGA-DD-AADO-01A
55 years, male, asian, stage:Stage I, alive, 453 days
305.5
TCGA-UB-A7ME-01A
51 years, male, asian, stage:Stage I, alive, 486 days
303.0
TCGA-DD-A4NJ-01A
54 years, female, white, stage:Stage II, alive, 928 days
298.7
TCGA-DD-AAVY-01A
56 years, male, asian, stage:Stage IIIA, alive, 1970 days
298.6
TCGA-DD-A1EJ-01A
71 years, female, white, stage:Stage IIIC, dead, 1005 days
298.3
TCGA-CC-A3M9-01A
45 years, male, asian, stage:Stage IIIA, dead, 300 days
297.8
TCGA-BC-A10R-01A
66 years, female, white, stage:'--, dead, 308 days
294.8
TCGA-WX-AA46-01A
61 years, male, white, stage:Stage II, alive, 756 days
294.8
TCGA-ZP-A9D1-01A
56 years, female, white, stage:'--, alive, 21 days
294.8
TCGA-UB-AA0V-01A
69 years, female, white, stage:Stage I, alive, 314 days
292.7
TCGA-DD-AAEI-01A
72 years, male, asian, stage:Stage I, alive, 1531 days
292.1
TCGA-DD-AACG-01A
52 years, male, asian, stage:Stage II, dead, 469 days
291.5
TCGA-DD-A3A2-01A
76 years, female, white, stage:Stage I, dead, 2131 days
291.4
TCGA-DD-A1EG-01A
76 years, male, white, stage:Stage I, dead, 1372 days
291.1
TCGA-KR-A7K8-01A
57 years, male, stage:Stage I, alive, 906 days
291.0
TCGA-2Y-A9HB-01A
66 years, male, stage:Stage I, alive, 260 days
290.9
TCGA-FV-A3R3-01A
38 years, female, white, stage:Stage I, dead, 366 days
288.6
TCGA-DD-A11D-01A
57 years, female, white, stage:Stage I, dead, 1560 days
287.6
TCGA-CC-A3MA-01A
61 years, male, asian, stage:Stage IIIA, dead, 303 days
286.4
TCGA-G3-A3CK-01A
61 years, male, asian, stage:Stage I, alive, 585 days
286.0
TCGA-DD-AAE2-01A
51 years, male, asian, stage:Stage I, alive, 638 days
285.9
TCGA-FV-A3I1-01A
81 years, female, white, stage:Stage II, dead, 247 days
285.0
TCGA-RC-A7SH-01A
42 years, male, asian, stage:Stage II, alive, 468 days
284.4
TCGA-ED-A8O6-01A
50 years, female, asian, stage:Stage IIIA, dead, 56 days
284.3
TCGA-DD-A3A9-01A
64 years, female, white, stage:Stage IVB, dead, 931 days
284.3
TCGA-DD-AACI-01A
69 years, male, asian, stage:Stage II, alive, 1618 days
284.1
TCGA-LG-A9QD-01A
68 years, male, white, stage:Stage IIIA, alive, 366 days
283.7
TCGA-EP-A12J-01A
62 years, male, black or african american, stage:Stage I, alive, 570 days
283.3
TCGA-DD-A4NR-01A
85 years, female, white, stage:Stage I, dead, 9 days
282.4
TCGA-CC-A123-01A
24 years, female, asian, stage:Stage IIIA, alive, 219 days
282.2
TCGA-EP-A26S-01A
70 years, male, white, stage:Stage I, alive, 608 days
281.9
TCGA-GJ-A6C0-01A
75 years, female, white, stage:Stage II, dead, 31 days
280.7
TCGA-DD-A1EK-01A
64 years, female, white, stage:Stage IVB, dead, 558 days
280.4
TCGA-UB-A7MA-01A
62 years, female, white, stage:Stage II, alive, 848 days
280.2
TCGA-DD-A4NK-01A
80 years, female, white, stage:Stage IIIA, dead, 1210 days
279.0
TCGA-DD-AACZ-01A
63 years, female, asian, stage:Stage I, dead, 171 days
278.9
TCGA-BC-A8YO-01A
66 years, female, white, stage:Stage IIIC, alive, 562 days
278.4
TCGA-RG-A7D4-01A
69 years, male, black or african american, stage:Stage II, alive, 1098 days
278.2
TCGA-DD-A1EH-01A
23 years, male, white, stage:Stage III, alive, 1495 days
276.1
TCGA-G3-A5SL-01A
70 years, male, white, stage:Stage II, alive, 621 days
275.5
TCGA-DD-AAVX-01A
38 years, male, asian, stage:Stage II, alive, 1718 days
275.4
TCGA-DD-A3A3-01A
45 years, male, asian, stage:Stage I, dead, 535 days
274.3
TCGA-2Y-A9GV-01A
54 years, female, white, stage:Stage I, dead, 2532 days
274.2
TCGA-5R-AA1D-01A
17 years, female, white, stage:Stage IIIA, alive, 449 days
273.8
TCGA-2Y-A9H0-01A
49 years, male, white, stage:Stage IIIA, alive, 3675 days
272.7
TCGA-DD-AACU-01A
59 years, male, asian, stage:Stage I, alive, 1567 days
272.6
TCGA-DD-AACB-01A
74 years, female, asian, stage:Stage I, alive, 2324 days
271.2
TCGA-2Y-A9H5-01A
59 years, female, white, stage:Stage I, dead, 555 days
270.2
TCGA-BC-A69I-01A
69 years, male, white, stage:Stage I, alive, 387 days
270.0
TCGA-ED-A7PX-01A
48 years, female, asian, stage:Stage II, alive, 6 days
269.3
TCGA-XR-A8TG-01A
58 years, male, white, stage:Stage I, alive, 898 days
268.4
TCGA-DD-A1EL-01A
23 years, male, black or african american, stage:Stage II, dead, 415 days
266.8
TCGA-BC-A110-01A
51 years, female, black or african american, stage:'--, dead, 2116 days
266.8
TCGA-ZS-A9CD-01A
73 years, male, white, stage:Stage II, dead, 1386 days
266.2
TCGA-DD-A39Y-01A
67 years, male, asian, stage:Stage I, dead, 171 days
265.2
TCGA-CC-A7II-01A
54 years, male, asian, stage:Stage IIIA, alive, 399 days
265.0
TCGA-CC-5258-01A
48 years, male, asian, stage:Stage II, dead, 129 days
264.7
TCGA-DD-AACA-01A
65 years, male, asian, stage:Stage I, alive, 2301 days
264.2
TCGA-DD-AACE-01A
62 years, male, asian, stage:Stage I, alive, 2184 days
263.9
TCGA-DD-AAC9-01A
51 years, male, asian, stage:Stage I, alive, 347 days
262.9
TCGA-ED-A66X-01A
35 years, male, asian, stage:Stage IIIA, alive, 406 days
261.9
TCGA-5C-A9VH-01A
70 years, male, white, stage:Stage I, alive, 322 days
257.3
TCGA-UB-A7MC-01A
59 years, male, white, stage:Stage IIIA, alive, 500 days
255.7
TCGA-FV-A4ZQ-01A
52 years, male, white, stage:Stage I, alive, 12 days
255.7
TCGA-G3-A25S-01A
64 years, male, white, stage:Stage I, dead, 416 days
255.0
TCGA-DD-AACS-01A
39 years, male, asian, stage:Stage I, alive, 1804 days
254.8
TCGA-BD-A3ER-01A
62 years, male, white, stage:Stage II, alive, 1115 days
254.3
TCGA-ED-A627-01A
74 years, male, white, stage:Stage I, alive, 423 days
254.0
TCGA-DD-A39W-01A
29 years, female, white, stage:Stage III, dead, 827 days
253.6
TCGA-DD-AACJ-01A
75 years, male, asian, stage:Stage II, alive, 2102 days
253.4
TCGA-G3-A6UC-01A
65 years, male, white, stage:Stage IIIB, alive, 671 days
253.4
TCGA-2Y-A9GT-01A
51 years, male, white, stage:Stage I, dead, 1624 days
253.0
TCGA-2Y-A9GY-01A
64 years, female, white, stage:Stage II, dead, 757 days
252.6
TCGA-2Y-A9GZ-01A
82 years, female, white, stage:Stage II, dead, 848 days
252.2
TCGA-FV-A496-01A
84 years, female, white, stage:Stage I, alive, 10 days
249.7
TCGA-DD-AADK-01A
68 years, female, asian, stage:Stage II, alive, 1049 days
249.7
TCGA-DD-A3A6-01A
72 years, female, white, stage:Stage II, dead, 3258 days
249.6
TCGA-CC-A7IE-01A
57 years, male, asian, stage:Stage IIIA, dead, 217 days
248.3
TCGA-DD-AAD1-01A
51 years, female, asian, stage:Stage I, alive, 564 days
246.9
TCGA-EP-A2KC-01A
62 years, male, black or african american, stage:Stage I, dead, 19 days
246.4
TCGA-CC-5259-01A
60 years, female, asian, stage:Stage IIIC, alive, 250 days
246.1
TCGA-DD-A1EE-01A
73 years, male, white, stage:Stage IIIA, dead, 349 days
245.4
TCGA-DD-A3A4-01A
37 years, male, white, stage:Stage IIIA, dead, 612 days
244.8
TCGA-DD-AAVQ-01A
38 years, male, asian, stage:Stage I, alive, 2728 days
243.2
TCGA-DD-AACN-01A
32 years, male, asian, stage:Stage I, alive, 1302 days
241.6
TCGA-DD-A4NI-01A
67 years, male, white, stage:Stage II, alive, 816 days
240.3
TCGA-BC-A5W4-01A
69 years, male, white, stage:Stage IIIA, dead, 547 days
239.7
TCGA-G3-AAV6-01A
53 years, female, white, stage:Stage IIIA, dead, 65 days
238.9
TCGA-ZP-A9D4-01A
64 years, female, white, stage:'--, alive, 395 days
238.8
TCGA-DD-AAD2-01A
66 years, male, asian, stage:Stage I, alive, 658 days
236.6
TCGA-CC-5260-01A
61 years, female, asian, stage:Stage IIIC, dead, 87 days
236.4
TCGA-DD-A1EC-01A
20 years, female, white, stage:Stage I, alive, 602 days
235.3
TCGA-DD-AAED-01A
51 years, male, asian, stage:Stage I, alive, 763 days
235.2
TCGA-ED-A8O5-01A
59 years, female, asian, stage:Stage IIIA, alive, 406 days
232.5
TCGA-DD-A4NP-01A
32 years, male, white, stage:Stage I, alive, 3308 days
232.4
TCGA-DD-AAC8-01A
72 years, male, asian, stage:Stage I, dead, 16 days
232.0
TCGA-CC-A7IJ-01A
56 years, male, asian, stage:Stage II, alive, 382 days
231.6
TCGA-DD-A73E-01A
66 years, male, white, stage:Stage I, alive, 44 days
230.4
TCGA-GJ-A3OU-01A
59 years, male, white, stage:Stage I, alive, 879 days
229.7
TCGA-DD-A115-01A
53 years, male, white, stage:Stage IIIA, dead, 2542 days
229.6
TCGA-DD-A4NS-01A
61 years, female, white, stage:Stage I, dead, 2456 days
228.0
TCGA-HP-A5MZ-01A
78 years, male, stage:Stage I, dead, 91 days
227.4
TCGA-BC-A69H-01A
64 years, male, white, stage:Stage II, alive, 444 days
226.2
TCGA-2Y-A9GW-01A
64 years, male, white, stage:Stage I, dead, 1271 days
224.1
TCGA-DD-AAW2-01A
69 years, male, asian, stage:Stage I, alive, 1855 days
223.5
TCGA-G3-AAV4-01A
83 years, female, white, stage:Stage I, dead, 27 days
223.0
TCGA-DD-AADU-01A
60 years, male, asian, stage:Stage II, alive, 554 days
222.4
TCGA-DD-AADD-01A
51 years, male, asian, stage:Stage I, alive, 1231 days
222.1
TCGA-DD-A4NL-01A
46 years, male, white, stage:Stage I, alive, 1711 days
221.2
TCGA-DD-AADA-01A
66 years, female, asian, stage:Stage I, alive, 1233 days
220.9
TCGA-CC-A3MB-01A
36 years, male, asian, stage:Stage IIIA, dead, 315 days
219.6
TCGA-DD-AAE6-01A
59 years, female, asian, stage:Stage I, alive, 141 days
219.2
TCGA-DD-AAVS-01A
56 years, male, asian, stage:Stage I, alive, 1823 days
219.2
TCGA-CC-5262-01A
67 years, male, asian, stage:Stage IIIC, dead, 103 days
217.6
TCGA-DD-AACT-01A
69 years, female, asian, stage:Stage I, alive, 1562 days
217.3
TCGA-G3-A5SJ-01A
59 years, male, white, stage:Stage I, alive, 698 days
215.9
TCGA-5R-AA1C-01A
57 years, male, white, stage:Stage II, alive, 520 days
215.3
TCGA-2Y-A9H2-01A
64 years, female, white, stage:Stage I, alive, 1731 days
214.5
TCGA-G3-A7M6-01A
60 years, female, white, stage:Stage I, alive, 632 days
212.9
TCGA-DD-AACD-01A
48 years, male, asian, stage:Stage I, dead, 381 days
212.4
TCGA-DD-AA3A-01A
81 years, female, white, stage:Stage I, dead, 410 days
211.6
TCGA-HP-A5N0-01A
90 years, female, stage:'--, dead, 752 days
211.3
TCGA-EP-A3RK-01A
73 years, male, white, stage:Stage IIIA, alive, 363 days
211.2
TCGA-ZS-A9CF-01A
64 years, male, white, stage:Stage II, alive, 2412 days
210.7
TCGA-DD-AAVV-01A
56 years, male, asian, stage:Stage II, alive, 2455 days
210.7
TCGA-2Y-A9H1-01A
58 years, male, white, stage:Stage I, dead, 1229 days
210.3
TCGA-DD-A1EF-01A
57 years, female, white, stage:Stage I, dead, 394 days
209.1
TCGA-WQ-A9G7-01A
71 years, female, white, stage:'--, alive, 30 days
203.6
TCGA-DD-AAEE-01A
55 years, male, asian, stage:Stage I, alive, 810 days
203.3
TCGA-MI-A75E-01A
61 years, male, white, stage:Stage IIIC, alive, 507 days
203.1
TCGA-MR-A8JO-01A
34 years, male, white, stage:Stage I, alive, 330 days
202.9
TCGA-XR-A8TF-01A
74 years, male, white, stage:Stage I, dead, 693 days
200.8
TCGA-NI-A8LF-01A
74 years, male, white, stage:Stage I, alive, 799 days
198.7
TCGA-ED-A459-01A
47 years, male, asian, stage:Stage II, alive, 910 days
197.6
TCGA-CC-A7IK-01A
59 years, male, asian, stage:Stage IIIA, dead, 262 days
197.5
TCGA-EP-A2KA-01A
52 years, female, white, stage:Stage IIIA, dead, 627 days
197.4
TCGA-DD-A114-01A
42 years, male, black or african american, stage:Stage II, dead, 1149 days
197.0
TCGA-DD-A1EA-01A
68 years, male, asian, stage:Stage II, alive, 2415 days
196.2
TCGA-DD-AACP-01A
64 years, male, asian, stage:Stage I, alive, 415 days
194.2
TCGA-DD-A4NB-01A
25 years, male, white, stage:Stage I, alive, 989 days
194.1
TCGA-DD-AACQ-01A
50 years, male, asian, stage:Stage II, dead, 432 days
193.2
TCGA-DD-AAE7-01A
72 years, male, asian, stage:Stage I, alive, 644 days
193.1
TCGA-XR-A8TE-01A
16 years, male, white, stage:Stage IIIA, alive, 925 days
186.4
TCGA-DD-AADN-01A
59 years, male, asian, stage:Stage I, alive, 898 days
185.8
TCGA-EP-A3JL-01A
76 years, male, white, stage:Stage I, alive, 303 days
185.6
TCGA-ED-A5KG-01A
60 years, female, asian, stage:Stage II, alive, 854 days
185.5
TCGA-CC-5264-01A
71 years, male, asian, stage:Stage IIIA, dead, 102 days
184.9
TCGA-DD-A1ED-01A
68 years, male, white, stage:Stage I, alive, 2301 days
184.8
TCGA-WX-AA44-01A
64 years, female, white, stage:Stage I, alive, 615 days
183.7
TCGA-DD-A3A1-01A
65 years, male, stage:Stage IIIA, dead, 233 days
183.5
TCGA-DD-A73A-01A
71 years, male, white, stage:Stage I, alive, 728 days
181.9
TCGA-CC-A1HT-01A
50 years, male, asian, stage:Stage IIIA, dead, 101 days
180.5
TCGA-DD-A73D-01A
68 years, female, white, stage:Stage II, alive, 693 days
180.1
TCGA-CC-A9FW-01A
68 years, male, asian, stage:Stage IIIA, alive, 248 days
179.6
TCGA-DD-AADC-01A
53 years, male, asian, stage:Stage I, dead, 425 days
174.5
TCGA-2Y-A9GX-01A
68 years, male, white, stage:Stage I, alive, 2442 days
172.5
TCGA-BC-A216-01A
62 years, female, white, stage:Stage IIIA, alive, 1351 days
168.4
TCGA-DD-AADY-01A
55 years, female, asian, stage:Stage I, alive, 555 days
168.1
TCGA-DD-AADP-01A
45 years, male, asian, stage:Stage I, alive, 458 days
166.8
TCGA-K7-A5RG-01A
66 years, male, black or african american, stage:Stage I, alive, 519 days
164.9
TCGA-BD-A3EP-01A
75 years, female, black or african american, stage:Stage I, alive, 409 days
158.6
TCGA-G3-AAV1-01A
51 years, male, asian, stage:Stage IIIC, dead, 359 days
157.1
TCGA-BC-A112-01A
80 years, male, white, stage:'--, dead, 153 days
154.6
TCGA-LG-A6GG-01A
79 years, female, white, stage:Stage II, alive, 387 days
154.0
TCGA-FV-A23B-01A
70 years, female, white, stage:Stage II, dead, 1852 days
153.2
TCGA-ED-A97K-01A
54 years, male, asian, stage:Stage IIIA, alive, 6 days
152.7
TCGA-RC-A6M6-01A
75 years, male, white, stage:Stage II, alive, 9 days
151.2
TCGA-G3-AAV2-01A
50 years, male, white, stage:Stage I, alive, 372 days
150.3
TCGA-DD-AADQ-01A
59 years, male, asian, stage:Stage II, alive, 436 days
149.8
TCGA-CC-A5UD-01A
45 years, male, asian, stage:Stage IIIA, dead, 304 days
149.1
TCGA-KR-A7K7-01A
61 years, female, white, stage:Stage II, alive, 951 days
149.1
TCGA-YA-A8S7-01A
68 years, male, white, stage:Stage IIIA, dead, 412 days
145.1
TCGA-DD-AAD8-01A
73 years, female, asian, stage:Stage I, alive, 1219 days
144.1
TCGA-DD-AAW3-01A
69 years, male, asian, stage:Stage I, alive, 1633 days
143.9
TCGA-CC-A8HV-01A
51 years, female, asian, stage:Stage II, dead, 279 days
143.1
TCGA-ED-A66Y-01A
51 years, female, asian, stage:Stage IIIA, dead, 296 days
143.0
TCGA-K7-AAU7-01A
61 years, male, white, stage:Stage II, alive, 359 days
135.7
TCGA-G3-AAV3-01A
58 years, female, white, stage:Stage II, alive, 412 days
135.6
TCGA-BC-A10U-01A
69 years, male, white, stage:'--, dead, 837 days
133.1
TCGA-WJ-A86L-01A
68 years, female, white, stage:Stage I, alive, 345 days
128.2
TCGA-DD-A39V-01A
77 years, male, white, stage:Stage II, dead, 643 days
127.1
TCGA-DD-AACY-01A
61 years, male, asian, stage:Stage I, alive, 1450 days
126.8
TCGA-ZP-A9CV-01A
59 years, male, white, stage:'--, dead, 1088 days
125.0
TCGA-RC-A7SF-01A
66 years, male, asian, stage:Stage I, alive, 579 days
120.3
TCGA-FV-A4ZP-01A
78 years, male, white, stage:Stage IIIA, dead, 2486 days
116.6
TCGA-DD-A3A7-01A
67 years, male, stage:Stage IIIB, dead, 419 days
108.8
TCGA-DD-A4NG-01A
77 years, male, white, stage:Stage IIIA, dead, 802 days
86.6
TCGA-DD-AAD6-01A
66 years, male, asian, stage:Stage IIIA, alive, 672 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
627
Tumor
1.5
513
Tumor
0.9
571
Tumor
0.9
227
Tumor
0.9
714
Normal
0.8
534
Normal
0.8
698
Normal
0.8
922
Normal
0.8
745
Tumor
0.8
756
Normal
0.8
786
Normal
0.7
868
Normal
0.7
722
Normal
0.7
912
Normal
0.7
882
Normal
0.7
448
Normal
0.7
858
Normal
0.7
1045
Tumor
0.7
462
Normal
0.7
824
Normal
0.7
328
Normal
0.7
738
Normal
0.7
964
Normal
0.7
723
Tumor
0.7
862
Normal
0.7
482
Normal
0.7
488
Normal
0.6
1043
Tumor
0.6
546
Normal
0.6
472
Normal
0.6
864
Normal
0.6
514
Normal
0.6
356
Normal
0.6
1032
Normal
0.6
648
Normal
0.6
944
Normal
0.6
515
Tumor
0.6
746
Normal
0.6
852
Normal
0.6
866
Normal
0.6
1027
Tumor
0.6
484
Normal
0.6
412
Normal
0.6
636
Normal
0.5
1014
Normal
0.5
982
Normal
0.5
818
Normal
0.5
1046
Normal
0.5
984
Normal
0.5
528
Normal
0.5
728
Normal
0.5
696
Normal
0.5
938
Normal
0.5
742
Normal
0.5
976
Normal
0.5
564
Normal
0.5
958
Normal
0.5
518
Normal
0.5
1025
Tumor
0.5
572
Normal
0.5
785
Tumor
0.5
286
Normal
0.5
487
Tumor
0.5
823
Tumor
0.5
1022
Normal
0.5
228
Normal
0.5
364
Normal
0.4
926
Normal
0.4
923
Tumor
0.4
954
Normal
0.4
924
Normal
0.4
494
Normal
0.4
481
Tumor
0.4
716
Normal
0.4
1026
Normal
0.4
874
Normal
0.4
128
Normal
0.4
526
Normal
0.4
713
Tumor
0.4
686
Normal
0.4
978
Normal
0.4
878
Normal
0.4
1044
Normal
0.4
1042
Normal
0.4
416
Normal
0.4
918
Normal
0.4
925
Tumor
0.4
436
Normal
0.4
867
Tumor
0.4
968
Normal
0.4
981
Tumor
0.4
1041
Tumor
0.4
916
Normal
0.4
616
Normal
0.4
727
Tumor
0.4
284
Normal
0.3
388
Normal
0.3
914
Normal
0.3
474
Normal
0.3
568
Normal
0.3
538
Normal
0.3
554
Normal
0.3
695
Tumor
0.3
232
Normal
0.3
1028
Normal
0.3
424
Normal
0.3
411
Tumor
0.3
884
Normal
0.3
1016
Normal
0.3
915
Tumor
0.3
1013
Tumor
0.3
537
Tumor
0.3
816
Normal
0.3
478
Normal
0.3
363
Tumor
0.3
628
Normal
0.2
466
Normal
0.2
955
Tumor
0.2
863
Tumor
0.2
212
Normal
0.2
967
Tumor
0.2
423
Tumor
0.2
755
Tumor
0.2
778
Normal
0.2
558
Normal
0.2
911
Tumor
0.2
517
Tumor
0.2
666
Normal
0.2
618
Normal
0.2
524
Normal
0.2
376
Normal
0.2
394
Normal
0.2
553
Tumor
0.2
664
Normal
0.2
516
Normal
0.2
172
Normal
0.2
873
Tumor
0.2
966
Normal
0.2
162
Normal
0.2
298
Normal
0.2
483
Tumor
0.2
142
Normal
0.2
952
Normal
0.2
452
Normal
0.2
461
Tumor
0.2
465
Tumor
0.1
361
Tumor
0.1
414
Normal
0.1
956
Normal
0.1
224
Normal
0.1
257
Tumor
0.1
327
Tumor
0.1
196
Normal
0.1
953
Tumor
0.1
432
Normal
0.1
741
Tumor
0.1
426
Normal
0.1
415
Tumor
0.1
111
Normal
0.1
428
Normal
0.1
662
Normal
0.1
615
Tumor
0.1
392
Normal
0.1
396
Normal
0.1
635
Tumor
0.1
422
Normal
0.1
1031
Tumor
0.1
777
Tumor
0.1
278
Normal
0.0
362
Normal
0.0
314
Normal
0.0
386
Normal
0.0
527
Tumor
0.0
148
Normal
0.0
365
Tumor
0.0
114
Normal
0.0
498
Normal
0.0
344
Normal
0.0
563
Tumor
0.0
214
Normal
0.0
525
Tumor
0.0
393
Tumor
0.0
642
Normal
0.0
352
Normal
0.0
492
Normal
0.0
744
Normal
0.0
921
Tumor
0.0
557
Tumor
0.0
342
Normal
0.0
258
Normal
0.0
721
Tumor
0.0
358
Normal
0.0
446
Normal
-0.1
353
Tumor
-0.1
332
Normal
-0.1
672
Normal
-0.1
574
Normal
-0.1
477
Tumor
-0.1
468
Normal
-0.1
186
Normal
-0.1
136
Normal
-0.1
464
Normal
-0.1
218
Normal
-0.1
536
Normal
-0.1
138
Normal
-0.1
222
Normal
-0.1
737
Tumor
-0.1
857
Tumor
-0.1
132
Normal
-0.2
861
Tumor
-0.2
937
Tumor
-0.2
523
Tumor
-0.2
137
Tumor
-0.2
456
Normal
-0.2
366
Normal
-0.2
533
Tumor
-0.2
354
Normal
-0.2
146
Normal
-0.2
567
Tumor
-0.2
473
Tumor
-0.2
617
Tumor
-0.2
272
Normal
-0.3
1015
Tumor
-0.3
126
Normal
-0.3
883
Tumor
-0.3
957
Tumor
-0.3
262
Normal
-0.3
431
Tumor
-0.3
261
Tumor
-0.3
434
Normal
-0.3
444
Normal
-0.3
368
Normal
-0.3
425
Tumor
-0.3
697
Tumor
-0.3
312
Normal
-0.3
443
Tumor
-0.3
355
Tumor
-0.3
188
Normal
-0.3
384
Normal
-0.3
223
Tumor
-0.3
715
Tumor
-0.3
145
Tumor
-0.3
743
Tumor
-0.4
951
Tumor
-0.4
433
Tumor
-0.4
451
Tumor
-0.4
814
Normal
-0.4
913
Tumor
-0.4
1021
Tumor
-0.4
851
Tumor
-0.4
113
Tumor
-0.4
685
Tumor
-0.4
427
Tumor
-0.4
471
Tumor
-0.4
268
Normal
-0.4
573
Tumor
-0.5
491
Tumor
-0.5
647
Tumor
-0.5
663
Tumor
-0.5
977
Tumor
-0.5
341
Tumor
-0.5
447
Tumor
-0.5
983
Tumor
-0.5
493
Tumor
-0.5
124
Normal
-0.5
813
Tumor
-0.6
815
Tumor
-0.6
975
Tumor
-0.6
161
Tumor
-0.6
963
Tumor
-0.6
187
Tumor
-0.6
881
Tumor
-0.6
641
Tumor
-0.6
285
Tumor
-0.6
267
Tumor
-0.6
943
Tumor
-0.6
127
Tumor
-0.6
357
Tumor
-0.6
217
Tumor
-0.7
135
Tumor
-0.7
231
Tumor
-0.7
497
Tumor
-0.7
297
Tumor
-0.7
192
Normal
-0.7
375
Tumor
-0.7
171
Tumor
-0.7
112
Tumor
-0.7
435
Tumor
-0.7
535
Tumor
-0.7
185
Tumor
-0.8
313
Tumor
-0.8
141
Tumor
-0.8
195
Tumor
-0.8
191
Tumor
-0.8
455
Tumor
-0.8
421
Tumor
-0.8
665
Tumor
-0.8
865
Tumor
-0.8
147
Tumor
-0.8
917
Tumor
-0.8
271
Tumor
-0.9
221
Tumor
-0.9
367
Tumor
-0.9
445
Tumor
-0.9
413
Tumor
-0.9
387
Tumor
-0.9
817
Tumor
-0.9
385
Tumor
-0.9
383
Tumor
-0.9
724
Normal
-1.0
213
Tumor
-1.0
211
Tumor
-1.0
463
Tumor
-1.1
311
Tumor
-1.1
125
Tumor
-1.1
391
Tumor
-1.1
131
Tumor
-1.1
467
Tumor
-1.1
351
Tumor
-1.1
661
Tumor
-1.1
965
Tumor
-1.2
671
Tumor
-1.2
277
Tumor
-1.2
395
Tumor
-1.2
877
Tumor
-1.3
545
Tumor
-1.4
283
Tumor
-1.4
331
Tumor
-1.5
343
Tumor
-1.5
123
Tumor
-1.6
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.