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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ATP5PF is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
309.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
677.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
669.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
603.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
599.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
591.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
574.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
570.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
557.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
540.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
536.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
534.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
527.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
526.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
514.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
510.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
507.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
507.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
502.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
501.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
499.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
494.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
486.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
479.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
474.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
473.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
472.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
467.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
464.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
464.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
460.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
456.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
455.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
454.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
449.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
449.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
446.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
445.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
444.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
444.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
442.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
437.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
432.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
430.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
430.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
430.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
429.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
427.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
425.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
424.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
423.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
423.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
422.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
419.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
417.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
417.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
412.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
411.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
411.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
410.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
410.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
408.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
408.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
407.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
407.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
406.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
406.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
406.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
405.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
405.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
404.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
403.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
403.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
403.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
403.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
403.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
400.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
398.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
396.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
393.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
392.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
388.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
387.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
383.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
382.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
382.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
381.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
381.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
380.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
380.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
378.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
378.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
375.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
374.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
374.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
371.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
371.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
368.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
367.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
367.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
366.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
366.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
365.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
365.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
363.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
362.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
361.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
360.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
360.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
360.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
359.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
359.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
359.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
358.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
355.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
354.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
354.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
353.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
353.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
352.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
352.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
351.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
351.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
350.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
350.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
350.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
349.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
348.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
348.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
347.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
347.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
346.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
344.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
344.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
343.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
340.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
336.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
335.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
335.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
334.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
333.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
333.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
331.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
331.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
330.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
329.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
329.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
329.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
328.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
327.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
327.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
327.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
327.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
327.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
326.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
326.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
325.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
324.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
322.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
321.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
319.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
317.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
316.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
315.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
315.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
313.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
313.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
313.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
310.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
308.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
308.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
307.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
306.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
306.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
306.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
305.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
303.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
298.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
298.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
298.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
297.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
294.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
294.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
294.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
292.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
292.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
291.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
291.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
291.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
291.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
290.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
288.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
287.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
286.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
286.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
285.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
285.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
284.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
284.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
284.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
284.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
283.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
283.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
282.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
282.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
281.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
280.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
280.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
280.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
279.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
278.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
278.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
278.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
276.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
275.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
275.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
274.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
274.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
273.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
272.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
272.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
271.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
270.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
270.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
269.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
268.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
266.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
266.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
266.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
265.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
265.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
264.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
264.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
263.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
262.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
261.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
257.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
255.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
255.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
255.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
254.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
254.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
254.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
253.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
253.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
253.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
253.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
252.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
252.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
249.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
249.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
249.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
248.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
246.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
246.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
246.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
245.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
244.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
243.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
241.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
240.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
239.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
238.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
238.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
236.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
236.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
235.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
235.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
232.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
232.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
232.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
231.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
230.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
229.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
229.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
228.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
227.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
226.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
224.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
223.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
223.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
222.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
222.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
221.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
220.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
219.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
219.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
219.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
217.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
217.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
215.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
215.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
214.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
212.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
212.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
211.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
211.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
211.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
210.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
210.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
210.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
209.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
203.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
203.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
203.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
202.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
200.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
198.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
197.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
197.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
197.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
197.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
196.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
194.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
194.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
193.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
193.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
186.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
185.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
185.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
185.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
184.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
184.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
183.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
183.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
181.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
180.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
180.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
179.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
174.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
172.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
168.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
168.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
166.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
164.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
158.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
157.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
154.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
154.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
153.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
152.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
151.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
150.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
149.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
149.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
149.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
145.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
144.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
143.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
143.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
143.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
135.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
135.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
133.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
128.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
127.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
126.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
125.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
120.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
116.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
108.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
86.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
627
Tumor
1.5
513
Tumor
0.9
571
Tumor
0.9
227
Tumor
0.9
714
Normal
0.8
534
Normal
0.8
698
Normal
0.8
922
Normal
0.8
745
Tumor
0.8
756
Normal
0.8
786
Normal
0.7
868
Normal
0.7
722
Normal
0.7
912
Normal
0.7
882
Normal
0.7
448
Normal
0.7
858
Normal
0.7
1045
Tumor
0.7
462
Normal
0.7
824
Normal
0.7
328
Normal
0.7
738
Normal
0.7
964
Normal
0.7
723
Tumor
0.7
862
Normal
0.7
482
Normal
0.7
488
Normal
0.6
1043
Tumor
0.6
546
Normal
0.6
472
Normal
0.6
864
Normal
0.6
514
Normal
0.6
356
Normal
0.6
1032
Normal
0.6
648
Normal
0.6
944
Normal
0.6
515
Tumor
0.6
746
Normal
0.6
852
Normal
0.6
866
Normal
0.6
1027
Tumor
0.6
484
Normal
0.6
412
Normal
0.6
636
Normal
0.5
1014
Normal
0.5
982
Normal
0.5
818
Normal
0.5
1046
Normal
0.5
984
Normal
0.5
528
Normal
0.5
728
Normal
0.5
696
Normal
0.5
938
Normal
0.5
742
Normal
0.5
976
Normal
0.5
564
Normal
0.5
958
Normal
0.5
518
Normal
0.5
1025
Tumor
0.5
572
Normal
0.5
785
Tumor
0.5
286
Normal
0.5
487
Tumor
0.5
823
Tumor
0.5
1022
Normal
0.5
228
Normal
0.5
364
Normal
0.4
926
Normal
0.4
923
Tumor
0.4
954
Normal
0.4
924
Normal
0.4
494
Normal
0.4
481
Tumor
0.4
716
Normal
0.4
1026
Normal
0.4
874
Normal
0.4
128
Normal
0.4
526
Normal
0.4
713
Tumor
0.4
686
Normal
0.4
978
Normal
0.4
878
Normal
0.4
1044
Normal
0.4
1042
Normal
0.4
416
Normal
0.4
918
Normal
0.4
925
Tumor
0.4
436
Normal
0.4
867
Tumor
0.4
968
Normal
0.4
981
Tumor
0.4
1041
Tumor
0.4
916
Normal
0.4
616
Normal
0.4
727
Tumor
0.4
284
Normal
0.3
388
Normal
0.3
914
Normal
0.3
474
Normal
0.3
568
Normal
0.3
538
Normal
0.3
554
Normal
0.3
695
Tumor
0.3
232
Normal
0.3
1028
Normal
0.3
424
Normal
0.3
411
Tumor
0.3
884
Normal
0.3
1016
Normal
0.3
915
Tumor
0.3
1013
Tumor
0.3
537
Tumor
0.3
816
Normal
0.3
478
Normal
0.3
363
Tumor
0.3
628
Normal
0.2
466
Normal
0.2
955
Tumor
0.2
863
Tumor
0.2
212
Normal
0.2
967
Tumor
0.2
423
Tumor
0.2
755
Tumor
0.2
778
Normal
0.2
558
Normal
0.2
911
Tumor
0.2
517
Tumor
0.2
666
Normal
0.2
618
Normal
0.2
524
Normal
0.2
376
Normal
0.2
394
Normal
0.2
553
Tumor
0.2
664
Normal
0.2
516
Normal
0.2
172
Normal
0.2
873
Tumor
0.2
966
Normal
0.2
162
Normal
0.2
298
Normal
0.2
483
Tumor
0.2
142
Normal
0.2
952
Normal
0.2
452
Normal
0.2
461
Tumor
0.2
465
Tumor
0.1
361
Tumor
0.1
414
Normal
0.1
956
Normal
0.1
224
Normal
0.1
257
Tumor
0.1
327
Tumor
0.1
196
Normal
0.1
953
Tumor
0.1
432
Normal
0.1
741
Tumor
0.1
426
Normal
0.1
415
Tumor
0.1
111
Normal
0.1
428
Normal
0.1
662
Normal
0.1
615
Tumor
0.1
392
Normal
0.1
396
Normal
0.1
635
Tumor
0.1
422
Normal
0.1
1031
Tumor
0.1
777
Tumor
0.1
278
Normal
0.0
362
Normal
0.0
314
Normal
0.0
386
Normal
0.0
527
Tumor
0.0
148
Normal
0.0
365
Tumor
0.0
114
Normal
0.0
498
Normal
0.0
344
Normal
0.0
563
Tumor
0.0
214
Normal
0.0
525
Tumor
0.0
393
Tumor
0.0
642
Normal
0.0
352
Normal
0.0
492
Normal
0.0
744
Normal
0.0
921
Tumor
0.0
557
Tumor
0.0
342
Normal
0.0
258
Normal
0.0
721
Tumor
0.0
358
Normal
0.0
446
Normal
-0.1
353
Tumor
-0.1
332
Normal
-0.1
672
Normal
-0.1
574
Normal
-0.1
477
Tumor
-0.1
468
Normal
-0.1
186
Normal
-0.1
136
Normal
-0.1
464
Normal
-0.1
218
Normal
-0.1
536
Normal
-0.1
138
Normal
-0.1
222
Normal
-0.1
737
Tumor
-0.1
857
Tumor
-0.1
132
Normal
-0.2
861
Tumor
-0.2
937
Tumor
-0.2
523
Tumor
-0.2
137
Tumor
-0.2
456
Normal
-0.2
366
Normal
-0.2
533
Tumor
-0.2
354
Normal
-0.2
146
Normal
-0.2
567
Tumor
-0.2
473
Tumor
-0.2
617
Tumor
-0.2
272
Normal
-0.3
1015
Tumor
-0.3
126
Normal
-0.3
883
Tumor
-0.3
957
Tumor
-0.3
262
Normal
-0.3
431
Tumor
-0.3
261
Tumor
-0.3
434
Normal
-0.3
444
Normal
-0.3
368
Normal
-0.3
425
Tumor
-0.3
697
Tumor
-0.3
312
Normal
-0.3
443
Tumor
-0.3
355
Tumor
-0.3
188
Normal
-0.3
384
Normal
-0.3
223
Tumor
-0.3
715
Tumor
-0.3
145
Tumor
-0.3
743
Tumor
-0.4
951
Tumor
-0.4
433
Tumor
-0.4
451
Tumor
-0.4
814
Normal
-0.4
913
Tumor
-0.4
1021
Tumor
-0.4
851
Tumor
-0.4
113
Tumor
-0.4
685
Tumor
-0.4
427
Tumor
-0.4
471
Tumor
-0.4
268
Normal
-0.4
573
Tumor
-0.5
491
Tumor
-0.5
647
Tumor
-0.5
663
Tumor
-0.5
977
Tumor
-0.5
341
Tumor
-0.5
447
Tumor
-0.5
983
Tumor
-0.5
493
Tumor
-0.5
124
Normal
-0.5
813
Tumor
-0.6
815
Tumor
-0.6
975
Tumor
-0.6
161
Tumor
-0.6
963
Tumor
-0.6
187
Tumor
-0.6
881
Tumor
-0.6
641
Tumor
-0.6
285
Tumor
-0.6
267
Tumor
-0.6
943
Tumor
-0.6
127
Tumor
-0.6
357
Tumor
-0.6
217
Tumor
-0.7
135
Tumor
-0.7
231
Tumor
-0.7
497
Tumor
-0.7
297
Tumor
-0.7
192
Normal
-0.7
375
Tumor
-0.7
171
Tumor
-0.7
112
Tumor
-0.7
435
Tumor
-0.7
535
Tumor
-0.7
185
Tumor
-0.8
313
Tumor
-0.8
141
Tumor
-0.8
195
Tumor
-0.8
191
Tumor
-0.8
455
Tumor
-0.8
421
Tumor
-0.8
665
Tumor
-0.8
865
Tumor
-0.8
147
Tumor
-0.8
917
Tumor
-0.8
271
Tumor
-0.9
221
Tumor
-0.9
367
Tumor
-0.9
445
Tumor
-0.9
413
Tumor
-0.9
387
Tumor
-0.9
817
Tumor
-0.9
385
Tumor
-0.9
383
Tumor
-0.9
724
Normal
-1.0
213
Tumor
-1.0
211
Tumor
-1.0
463
Tumor
-1.1
311
Tumor
-1.1
125
Tumor
-1.1
391
Tumor
-1.1
131
Tumor
-1.1
467
Tumor
-1.1
351
Tumor
-1.1
661
Tumor
-1.1
965
Tumor
-1.2
671
Tumor
-1.2
277
Tumor
-1.2
395
Tumor
-1.2
877
Tumor
-1.3
545
Tumor
-1.4
283
Tumor
-1.4
331
Tumor
-1.5
343
Tumor
-1.5
123
Tumor
-1.6
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.