We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GBP5 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
4.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
342.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
66.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
61.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
48.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
47.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
44.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
42.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
30.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
27.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
25.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
25.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
24.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
21.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
20.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
20.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
19.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
18.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
17.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
16.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
14.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
11.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
11.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
10.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
9.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
9.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
9.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
9.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
8.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
8.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
8.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
8.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
8.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
7.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
7.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
7.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
7.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
7.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
6.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
6.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
6.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
6.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
5.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
5.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
5.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
5.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
5.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
5.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
5.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
5.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
5.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
4.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
4.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
4.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
4.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
4.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
4.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
4.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
4.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
4.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
4.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
3.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
3.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
3.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
3.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
3.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
3.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
3.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
3.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
3.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
3.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
3.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
3.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
3.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
3.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
2.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
2.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
2.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
2.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
2.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
2.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
2.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
2.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
2.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
2.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
2.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
2.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
2.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
2.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
2.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
2.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
2.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
2.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
2.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
2.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
2.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
2.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
2.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
2.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
2.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
2.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
2.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
2.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
2.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
2.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
2.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
2.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
2.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
2.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
2.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
1.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
1.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
1.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
1.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
1.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
1.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
1.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
1.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
1.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
1.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
1.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
1.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
1.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
1.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
1.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
1.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
1.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
1.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
1.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
1.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
1.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
1.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
1.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
1.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
1.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
1.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
1.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
1.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
1.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
1.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
1.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
1.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
1.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
1.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
1.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
1.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
1.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
1.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
1.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
1.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
1.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
1.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
1.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
1.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
1.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
1.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
1.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
1.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
1.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
1.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
1.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
1.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
1.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
1.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
1.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
1.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
1.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
1.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
1.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
1.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
1.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
1.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
1.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
1.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
1.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
1.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
1.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
1.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
1.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
1.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
1.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
1.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
1.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
1.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
1.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
1.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
1.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
1.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
1.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
1.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
1.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
1.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
1.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
1.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
1.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
1.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
0.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
0.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
0.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
0.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
0.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
0.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
0.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
0.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
0.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
0.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
0.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
0.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
0.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
0.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
0.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
0.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
0.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
0.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
0.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
0.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
0.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
0.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
0.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
0.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
0.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
0.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
0.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
0.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
0.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
0.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
0.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
0.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
0.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
0.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
0.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
0.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
0.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
0.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
0.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
0.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
0.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
0.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
0.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
0.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
0.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
0.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GBP5 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.1
Number of samples
231
Samples
Sample
Description
TPM
DO23549
0 years, male, NA, stage:3, alive, 990 days
424.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
412.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
98.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
96.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
57.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
49.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
49.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
47.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
43.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
37.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
37.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
36.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
32.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
30.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
30.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
28.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
25.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
24.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
21.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
20.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
20.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
20.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
19.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
18.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
18.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
17.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
17.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
17.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
16.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
15.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
15.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
15.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
15.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
15.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
14.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
14.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
14.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
14.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
14.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
12.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
11.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
11.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
10.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
10.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
10.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
9.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
9.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
9.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
9.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
9.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
8.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
8.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
8.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
8.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
8.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
8.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
8.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
7.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
7.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
7.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
7.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
7.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
7.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
7.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
6.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
6.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
6.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
6.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
6.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
6.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
6.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
6.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
6.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
6.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
6.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
6.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
5.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
5.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
5.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
5.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
5.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
5.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
5.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
5.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
5.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
5.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
5.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
5.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
5.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
5.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
4.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
4.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
4.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
4.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
4.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
4.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
4.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
4.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
4.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
4.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
4.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
4.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
4.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
4.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
4.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
4.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
4.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
4.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
3.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
3.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
3.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
3.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
3.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
3.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
3.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
3.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
3.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
3.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
3.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
3.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
3.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
3.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
3.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
3.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
3.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
3.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
3.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
3.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
2.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
2.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
2.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
2.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
2.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
2.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
2.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
2.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
2.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
2.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
2.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
2.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
2.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
2.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
2.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
2.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
2.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
2.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
2.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
2.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
2.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
2.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
2.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
2.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
2.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
2.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
2.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
1.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
1.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
1.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
1.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
1.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
1.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
1.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
1.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
1.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
1.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
1.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
1.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
1.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
1.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
1.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
1.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
1.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
1.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
1.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
1.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
1.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
1.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
1.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
1.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
1.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
1.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
1.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
1.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
1.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
1.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
1.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
1.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
1.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
0.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
0.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
0.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
0.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
0.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
0.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
0.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
0.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
0.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
0.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
0.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
0.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
0.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
0.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
0.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
0.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
0.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
0.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
0.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
0.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
0.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
0.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
0.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
0.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
0.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
724
Normal
2.4
211
Tumor
2.1
383
Tumor
2.0
861
Tumor
2.0
661
Tumor
1.9
262
Normal
1.8
434
Normal
1.8
213
Tumor
1.8
978
Normal
1.6
188
Normal
1.4
966
Normal
1.4
1031
Tumor
1.4
685
Tumor
1.4
492
Normal
1.4
535
Tumor
1.4
217
Tumor
1.3
113
Tumor
1.1
385
Tumor
1.1
917
Tumor
1.0
914
Normal
1.0
823
Tumor
1.0
573
Tumor
1.0
721
Tumor
1.0
451
Tumor
0.9
524
Normal
0.9
1043
Tumor
0.9
1015
Tumor
0.8
471
Tumor
0.8
468
Normal
0.7
126
Normal
0.6
362
Normal
0.6
446
Normal
0.6
375
Tumor
0.5
366
Normal
0.5
478
Normal
0.5
391
Tumor
0.5
814
Normal
0.5
498
Normal
0.4
396
Normal
0.4
491
Tumor
0.4
915
Tumor
0.3
135
Tumor
0.3
686
Normal
0.3
384
Normal
0.3
815
Tumor
0.3
272
Normal
0.3
536
Normal
0.3
224
Normal
0.3
867
Tumor
0.3
343
Tumor
0.3
883
Tumor
0.3
851
Tumor
0.3
311
Tumor
0.3
185
Tumor
0.2
432
Normal
0.2
467
Tumor
0.2
386
Normal
0.2
146
Normal
0.2
943
Tumor
0.2
916
Normal
0.2
195
Tumor
0.2
494
Normal
0.2
141
Tumor
0.2
493
Tumor
0.2
663
Tumor
0.2
1042
Normal
0.2
332
Normal
0.2
954
Normal
0.2
191
Tumor
0.2
857
Tumor
0.1
716
Normal
0.1
963
Tumor
0.1
268
Normal
0.1
862
Normal
0.1
283
Tumor
0.1
258
Normal
0.1
858
Normal
0.1
187
Tumor
0.1
852
Normal
0.1
538
Normal
0.1
367
Tumor
0.1
926
Normal
0.1
232
Normal
0.0
456
Normal
0.0
142
Normal
0.0
528
Normal
0.0
387
Tumor
0.0
111
Normal
0.0
1026
Normal
0.0
212
Normal
0.0
455
Tumor
0.0
444
Normal
0.0
415
Tumor
0.0
124
Normal
0.0
114
Normal
0.0
756
Normal
0.0
925
Tumor
-0.1
922
Normal
-0.1
514
Normal
-0.1
818
Normal
-0.1
1028
Normal
-0.1
558
Normal
-0.1
816
Normal
-0.1
1016
Normal
-0.1
976
Normal
-0.1
138
Normal
-0.1
574
Normal
-0.1
488
Normal
-0.1
664
Normal
-0.1
938
Normal
-0.1
738
Normal
-0.1
666
Normal
-0.2
526
Normal
-0.2
864
Normal
-0.2
722
Normal
-0.2
136
Normal
-0.2
714
Normal
-0.2
447
Tumor
-0.2
672
Normal
-0.2
952
Normal
-0.2
284
Normal
-0.2
937
Tumor
-0.2
518
Normal
-0.2
464
Normal
-0.2
778
Normal
-0.2
161
Tumor
-0.2
218
Normal
-0.2
955
Tumor
-0.2
352
Normal
-0.2
956
Normal
-0.2
913
Tumor
-0.2
662
Normal
-0.2
214
Normal
-0.2
427
Tumor
-0.3
628
Normal
-0.3
487
Tumor
-0.3
452
Normal
-0.3
958
Normal
-0.3
975
Tumor
-0.3
388
Normal
-0.3
698
Normal
-0.3
172
Normal
-0.3
953
Tumor
-0.3
344
Normal
-0.3
728
Normal
-0.3
125
Tumor
-0.3
977
Tumor
-0.3
461
Tumor
-0.3
824
Normal
-0.3
755
Tumor
-0.3
392
Normal
-0.3
413
Tumor
-0.3
1022
Normal
-0.3
463
Tumor
-0.3
376
Normal
-0.3
882
Normal
-0.3
222
Normal
-0.3
1032
Normal
-0.3
1044
Normal
-0.3
192
Normal
-0.3
912
Normal
-0.4
462
Normal
-0.4
162
Normal
-0.4
648
Normal
-0.4
564
Normal
-0.4
964
Normal
-0.4
1041
Tumor
-0.4
1046
Normal
-0.4
227
Tumor
-0.4
563
Tumor
-0.4
537
Tumor
-0.4
416
Normal
-0.4
786
Normal
-0.4
817
Tumor
-0.4
278
Normal
-0.4
364
Normal
-0.4
516
Normal
-0.4
482
Normal
-0.4
865
Tumor
-0.4
474
Normal
-0.4
365
Tumor
-0.4
368
Normal
-0.4
132
Normal
-0.4
723
Tumor
-0.4
968
Normal
-0.4
312
Normal
-0.4
742
Normal
-0.4
425
Tumor
-0.4
298
Normal
-0.4
443
Tumor
-0.4
534
Normal
-0.4
744
Normal
-0.5
448
Normal
-0.5
554
Normal
-0.5
525
Tumor
-0.5
483
Tumor
-0.5
785
Tumor
-0.5
145
Tumor
-0.5
671
Tumor
-0.5
697
Tumor
-0.5
868
Normal
-0.5
696
Normal
-0.5
424
Normal
-0.5
358
Normal
-0.5
881
Tumor
-0.5
983
Tumor
-0.5
1014
Normal
-0.5
924
Normal
-0.5
196
Normal
-0.5
353
Tumor
-0.5
128
Normal
-0.5
137
Tumor
-0.5
944
Normal
-0.5
231
Tumor
-0.5
466
Normal
-0.5
918
Normal
-0.5
395
Tumor
-0.5
1025
Tumor
-0.5
394
Normal
-0.5
484
Normal
-0.5
433
Tumor
-0.5
884
Normal
-0.5
297
Tumor
-0.5
271
Tumor
-0.5
261
Tumor
-0.5
356
Normal
-0.5
984
Normal
-0.6
472
Normal
-0.6
874
Normal
-0.6
286
Normal
-0.6
223
Tumor
-0.6
426
Normal
-0.6
355
Tumor
-0.6
866
Normal
-0.6
546
Normal
-0.6
228
Normal
-0.6
277
Tumor
-0.6
127
Tumor
-0.6
481
Tumor
-0.6
186
Normal
-0.6
431
Tumor
-0.6
813
Tumor
-0.6
421
Tumor
-0.6
148
Normal
-0.6
967
Tumor
-0.6
412
Normal
-0.6
713
Tumor
-0.6
342
Normal
-0.6
131
Tumor
-0.7
951
Tumor
-0.7
877
Tumor
-0.7
477
Tumor
-0.7
636
Normal
-0.7
497
Tumor
-0.7
571
Tumor
-0.7
863
Tumor
-0.7
361
Tumor
-0.7
557
Tumor
-0.7
746
Normal
-0.7
354
Normal
-0.8
112
Tumor
-0.8
363
Tumor
-0.8
982
Normal
-0.8
328
Normal
-0.8
221
Tumor
-0.8
314
Normal
-0.8
267
Tumor
-0.8
616
Normal
-0.8
665
Tumor
-0.8
617
Tumor
-0.8
715
Tumor
-0.8
568
Normal
-0.8
1027
Tumor
-0.9
923
Tumor
-0.9
1045
Tumor
-0.9
572
Normal
-0.9
473
Tumor
-0.9
285
Tumor
-0.9
553
Tumor
-0.9
428
Normal
-0.9
642
Normal
-0.9
745
Tumor
-0.9
878
Normal
-0.9
957
Tumor
-0.9
727
Tumor
-0.9
414
Normal
-1.0
422
Normal
-1.0
341
Tumor
-1.0
545
Tumor
-1.0
1021
Tumor
-1.0
147
Tumor
-1.0
527
Tumor
-1.0
618
Normal
-1.0
641
Tumor
-1.0
436
Normal
-1.0
331
Tumor
-1.0
123
Tumor
-1.0
423
Tumor
-1.1
445
Tumor
-1.1
357
Tumor
-1.1
327
Tumor
-1.1
393
Tumor
-1.1
647
Tumor
-1.1
777
Tumor
-1.1
567
Tumor
-1.1
981
Tumor
-1.1
873
Tumor
-1.1
741
Tumor
-1.1
615
Tumor
-1.2
257
Tumor
-1.2
737
Tumor
-1.2
351
Tumor
-1.2
921
Tumor
-1.3
695
Tumor
-1.3
513
Tumor
-1.3
523
Tumor
-1.3
435
Tumor
-1.3
171
Tumor
-1.3
1013
Tumor
-1.3
627
Tumor
-1.3
515
Tumor
-1.4
313
Tumor
-1.4
465
Tumor
-1.4
965
Tumor
-1.4
533
Tumor
-1.4
517
Tumor
-1.4
635
Tumor
-1.4
411
Tumor
-1.5
911
Tumor
-1.7
743
Tumor
-2.0
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
