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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CC2D1B is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
29.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
24.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
24.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
23.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
23.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
22.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
21.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
20.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
19.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
19.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
19.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
18.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
18.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
17.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
17.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
17.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
17.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
17.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
16.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
16.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
16.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
16.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
15.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
15.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
15.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
15.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
15.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
14.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
14.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
14.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
14.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
14.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
14.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
14.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
13.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
13.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
13.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
13.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
13.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
13.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
13.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
13.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
13.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
13.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
13.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
13.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
12.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
12.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
12.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
12.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
12.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
12.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
12.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
12.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
12.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
12.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
12.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
11.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
11.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
11.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
11.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
11.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
11.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
11.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
11.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
11.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
11.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
11.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
11.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
11.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
11.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
11.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
10.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
10.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
10.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
10.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
10.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
10.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
10.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
10.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
10.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
10.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
10.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
10.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
10.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
10.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
10.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
10.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
10.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
10.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
10.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
10.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
9.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
9.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
9.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
9.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
9.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
9.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
9.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
9.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
9.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
9.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
9.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
9.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
9.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
9.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
9.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
9.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
9.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
9.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
9.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
9.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
9.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
9.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
9.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
9.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
9.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
9.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
9.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
9.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
9.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
9.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
9.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
8.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
8.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
8.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
8.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
8.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
8.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
8.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
8.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
8.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
8.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
8.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
8.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
8.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
8.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
8.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
8.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
8.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
8.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
8.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
8.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
8.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
8.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
8.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
8.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
8.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
8.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
8.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
8.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
8.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
8.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
8.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
8.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
8.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
8.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
8.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
8.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
8.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
8.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
8.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
7.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
7.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
7.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
7.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
7.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
7.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
7.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
7.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
7.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
7.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
7.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
7.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
7.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
7.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
7.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
7.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
7.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
7.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
7.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
7.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
7.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
7.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
7.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
7.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
7.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
7.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
7.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
7.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
7.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
7.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
7.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
7.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
7.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
7.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
7.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
7.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
7.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
7.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
7.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
7.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
7.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
7.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
7.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
7.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
6.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
6.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
6.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
6.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
6.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
6.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
6.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
6.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
6.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
6.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
6.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
6.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
6.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
6.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
6.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
6.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
6.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
6.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
6.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
6.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
6.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
6.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
6.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
6.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
6.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
6.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
6.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
6.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
6.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
6.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
6.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
6.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
6.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
6.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
6.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
6.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
6.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
6.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
6.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
6.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
6.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
6.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
6.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
6.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
6.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
6.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
6.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
6.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
6.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
5.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
5.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
5.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
5.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
5.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
5.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
5.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
5.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
5.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
5.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
5.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
5.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
5.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
5.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
5.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
5.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
5.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
5.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
5.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
5.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
5.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
5.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
5.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
5.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
5.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
5.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
5.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
5.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
5.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
5.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
5.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
5.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
5.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
5.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
5.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
5.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
4.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
4.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
4.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
4.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
4.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
4.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
4.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
4.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
4.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
4.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
4.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
4.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
4.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
4.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
4.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
4.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
4.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
4.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
4.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
4.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
4.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
4.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
4.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
4.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
4.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
3.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
3.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
3.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
3.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
3.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
3.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CC2D1B is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.7
Number of samples
231
Samples
Sample
Description
TPM
DO45209
0 years, male, NA, stage:4, alive, 1350 days
21.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
19.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
19.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
16.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
16.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
16.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
15.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
15.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
15.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
15.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
15.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
14.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
14.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
14.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
14.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
14.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
13.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
13.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
13.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
13.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
13.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
13.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
13.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
12.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
12.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
12.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
12.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
12.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
12.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
12.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
11.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
11.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
11.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
11.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
11.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
11.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
11.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
10.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
10.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
10.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
10.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
10.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
10.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
10.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
10.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
10.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
10.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
10.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
10.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
9.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
9.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
9.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
9.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
9.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
9.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
9.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
9.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
9.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
9.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
9.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
9.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
9.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
9.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
9.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
9.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
9.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
8.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
8.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
8.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
8.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
8.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
8.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
8.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
8.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
8.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
8.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
8.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
8.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
8.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
8.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
8.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
8.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
8.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
8.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
7.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
7.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
7.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
7.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
7.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
7.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
7.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
7.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
7.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
7.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
7.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
7.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
7.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
7.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
7.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
7.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
7.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
7.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
7.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
7.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
7.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
7.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
7.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
7.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
7.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
7.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
7.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
7.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
7.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
7.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
7.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
7.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
7.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
7.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
7.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
7.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
7.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
6.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
6.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
6.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
6.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
6.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
6.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
6.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
6.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
6.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
6.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
6.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
6.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
6.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
6.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
6.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
6.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
6.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
6.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
6.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
6.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
6.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
6.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
6.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
6.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
6.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
6.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
6.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
6.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
6.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
6.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
5.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
5.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
5.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
5.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
5.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
5.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
5.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
5.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
5.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
5.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
5.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
5.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
5.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
5.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
5.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
5.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
5.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
5.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
5.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
5.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
5.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
5.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
5.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
5.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
5.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
5.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
5.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
5.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
5.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
5.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
5.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
5.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
5.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
5.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
5.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
5.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
4.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
4.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
4.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
4.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
4.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
4.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
4.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
4.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
4.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
4.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
4.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
4.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
4.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
4.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
4.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
4.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
4.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
4.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
4.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
4.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
4.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
4.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
4.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
4.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
4.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
3.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
3.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
3.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
3.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
3.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
3.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
3.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
3.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
3.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
3.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
3.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
3.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
3.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
3.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
3.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
2.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
2.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
2.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
957
Tumor
1.2
925
Tumor
0.8
411
Tumor
0.8
1013
Tumor
0.7
1027
Tumor
0.7
125
Tumor
0.7
745
Tumor
0.6
537
Tumor
0.6
477
Tumor
0.6
695
Tumor
0.6
355
Tumor
0.6
647
Tumor
0.6
123
Tumor
0.6
533
Tumor
0.6
663
Tumor
0.5
851
Tumor
0.5
741
Tumor
0.5
513
Tumor
0.5
487
Tumor
0.5
525
Tumor
0.5
257
Tumor
0.5
953
Tumor
0.5
112
Tumor
0.4
737
Tumor
0.4
425
Tumor
0.4
387
Tumor
0.4
923
Tumor
0.4
313
Tumor
0.4
283
Tumor
0.4
1025
Tumor
0.4
911
Tumor
0.4
473
Tumor
0.4
375
Tumor
0.4
1021
Tumor
0.3
231
Tumor
0.3
571
Tumor
0.3
545
Tumor
0.3
865
Tumor
0.3
341
Tumor
0.3
943
Tumor
0.3
951
Tumor
0.3
465
Tumor
0.3
191
Tumor
0.3
413
Tumor
0.3
755
Tumor
0.3
327
Tumor
0.3
431
Tumor
0.3
423
Tumor
0.3
861
Tumor
0.3
261
Tumor
0.3
131
Tumor
0.2
981
Tumor
0.2
523
Tumor
0.2
311
Tumor
0.2
463
Tumor
0.2
493
Tumor
0.2
443
Tumor
0.2
421
Tumor
0.2
873
Tumor
0.2
965
Tumor
0.2
813
Tumor
0.2
147
Tumor
0.2
857
Tumor
0.2
137
Tumor
0.2
573
Tumor
0.2
435
Tumor
0.2
567
Tumor
0.2
515
Tumor
0.2
185
Tumor
0.2
863
Tumor
0.2
171
Tumor
0.2
1041
Tumor
0.2
187
Tumor
0.2
395
Tumor
0.2
915
Tumor
0.2
127
Tumor
0.2
445
Tumor
0.2
478
Normal
0.2
527
Tumor
0.1
135
Tumor
0.1
483
Tumor
0.1
977
Tumor
0.1
867
Tumor
0.1
491
Tumor
0.1
724
Normal
0.1
211
Tumor
0.1
161
Tumor
0.1
883
Tumor
0.1
665
Tumor
0.1
145
Tumor
0.1
777
Tumor
0.1
1045
Tumor
0.1
524
Normal
0.1
498
Normal
0.1
361
Tumor
0.1
488
Normal
0.1
213
Tumor
0.1
494
Normal
0.1
312
Normal
0.1
558
Normal
0.1
467
Tumor
0.1
484
Normal
0.1
481
Tumor
0.1
277
Tumor
0.1
785
Tumor
0.1
635
Tumor
0.1
666
Normal
0.1
427
Tumor
0.1
357
Tumor
0.1
685
Tumor
0.1
297
Tumor
0.1
188
Normal
0.0
455
Tumor
0.0
975
Tumor
0.0
661
Tumor
0.0
451
Tumor
0.0
698
Normal
0.0
514
Normal
0.0
298
Normal
0.0
517
Tumor
0.0
722
Normal
0.0
814
Normal
0.0
572
Normal
0.0
365
Tumor
0.0
554
Normal
0.0
937
Tumor
0.0
955
Tumor
0.0
186
Normal
0.0
721
Tumor
0.0
696
Normal
0.0
817
Tumor
0.0
823
Tumor
0.0
232
Normal
0.0
328
Normal
0.0
615
Tumor
0.0
492
Normal
0.0
778
Normal
0.0
332
Normal
0.0
148
Normal
0.0
528
Normal
0.0
448
Normal
0.0
664
Normal
0.0
497
Tumor
0.0
278
Normal
0.0
384
Normal
0.0
627
Tumor
0.0
124
Normal
0.0
192
Normal
0.0
526
Normal
0.0
916
Normal
0.0
723
Tumor
0.0
142
Normal
0.0
353
Tumor
0.0
744
Normal
0.0
926
Normal
0.0
472
Normal
0.0
976
Normal
0.0
444
Normal
0.0
864
Normal
0.0
1042
Normal
0.0
738
Normal
0.0
958
Normal
0.0
172
Normal
0.0
1046
Normal
0.0
616
Normal
0.0
474
Normal
0.0
563
Tumor
0.0
286
Normal
0.0
113
Tumor
0.0
433
Tumor
0.0
954
Normal
0.0
1022
Normal
0.0
672
Normal
0.0
162
Normal
0.0
852
Normal
0.0
642
Normal
0.0
518
Normal
0.0
536
Normal
0.0
314
Normal
0.0
944
Normal
0.0
574
Normal
0.0
415
Tumor
-0.1
351
Tumor
-0.1
617
Tumor
-0.1
383
Tumor
-0.1
195
Tumor
-0.1
1026
Normal
-0.1
516
Normal
-0.1
968
Normal
-0.1
546
Normal
-0.1
636
Normal
-0.1
538
Normal
-0.1
1044
Normal
-0.1
392
Normal
-0.1
482
Normal
-0.1
1032
Normal
-0.1
364
Normal
-0.1
742
Normal
-0.1
862
Normal
-0.1
356
Normal
-0.1
268
Normal
-0.1
358
Normal
-0.1
746
Normal
-0.1
434
Normal
-0.1
535
Tumor
-0.1
456
Normal
-0.1
866
Normal
-0.1
868
Normal
-0.1
468
Normal
-0.1
228
Normal
-0.1
262
Normal
-0.1
824
Normal
-0.1
564
Normal
-0.1
432
Normal
-0.1
964
Normal
-0.1
713
Tumor
-0.1
956
Normal
-0.1
393
Tumor
-0.1
1014
Normal
-0.1
1028
Normal
-0.1
628
Normal
-0.1
913
Tumor
-0.1
126
Normal
-0.1
368
Normal
-0.1
136
Normal
-0.1
978
Normal
-0.1
428
Normal
-0.1
952
Normal
-0.1
716
Normal
-0.1
534
Normal
-0.1
386
Normal
-0.1
918
Normal
-0.1
756
Normal
-0.1
662
Normal
-0.1
141
Tumor
-0.1
912
Normal
-0.1
727
Tumor
-0.1
818
Normal
-0.1
924
Normal
-0.1
212
Normal
-0.1
1015
Tumor
-0.1
132
Normal
-0.1
728
Normal
-0.1
922
Normal
-0.1
196
Normal
-0.1
966
Normal
-0.1
1031
Tumor
-0.1
217
Tumor
-0.1
111
Normal
-0.1
376
Normal
-0.1
982
Normal
-0.1
426
Normal
-0.1
984
Normal
-0.1
267
Tumor
-0.1
412
Normal
-0.1
258
Normal
-0.1
464
Normal
-0.1
352
Normal
-0.1
114
Normal
-0.1
786
Normal
-0.1
343
Tumor
-0.1
284
Normal
-0.1
461
Tumor
-0.1
462
Normal
-0.1
424
Normal
-0.1
214
Normal
-0.1
466
Normal
-0.1
331
Tumor
-0.1
648
Normal
-0.1
697
Tumor
-0.1
396
Normal
-0.1
714
Normal
-0.1
446
Normal
-0.1
436
Normal
-0.1
272
Normal
-0.1
568
Normal
-0.1
858
Normal
-0.1
366
Normal
-0.1
686
Normal
-0.1
963
Tumor
-0.1
354
Normal
-0.1
362
Normal
-0.1
416
Normal
-0.1
146
Normal
-0.2
128
Normal
-0.2
223
Tumor
-0.2
224
Normal
-0.2
138
Normal
-0.2
394
Normal
-0.2
342
Normal
-0.2
874
Normal
-0.2
816
Normal
-0.2
422
Normal
-0.2
285
Tumor
-0.2
367
Tumor
-0.2
222
Normal
-0.2
452
Normal
-0.2
557
Tumor
-0.2
218
Normal
-0.2
917
Tumor
-0.2
938
Normal
-0.2
1043
Tumor
-0.2
414
Normal
-0.2
447
Tumor
-0.2
271
Tumor
-0.2
221
Tumor
-0.2
884
Normal
-0.2
618
Normal
-0.2
882
Normal
-0.2
914
Normal
-0.2
553
Tumor
-0.2
344
Normal
-0.2
385
Tumor
-0.2
641
Tumor
-0.2
881
Tumor
-0.3
878
Normal
-0.3
388
Normal
-0.3
671
Tumor
-0.3
363
Tumor
-0.3
391
Tumor
-0.3
715
Tumor
-0.4
815
Tumor
-0.4
1016
Normal
-0.4
227
Tumor
-0.4
471
Tumor
-0.4
921
Tumor
-0.4
743
Tumor
-0.4
877
Tumor
-0.5
967
Tumor
-0.5
983
Tumor
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
