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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TOMM70 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
24.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
60.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
58.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
56.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
53.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
50.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
47.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
46.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
46.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
45.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
44.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
44.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
44.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
44.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
43.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
43.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
43.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
42.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
41.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
41.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
41.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
41.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
41.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
39.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
38.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
38.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
38.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
38.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
38.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
38.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
37.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
37.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
37.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
37.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
36.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
36.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
36.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
36.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
35.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
35.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
35.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
35.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
34.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
34.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
34.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
34.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
34.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
34.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
34.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
34.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
33.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
33.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
33.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
33.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
33.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
33.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
33.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
33.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
33.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
33.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
32.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
32.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
32.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
32.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
32.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
31.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
31.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
31.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
31.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
30.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
30.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
30.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
30.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
30.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
30.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
30.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
30.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
30.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
30.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
30.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
30.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
30.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
30.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
29.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
29.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
29.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
29.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
29.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
29.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
29.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
29.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
28.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
28.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
28.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
28.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
28.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
28.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
28.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
28.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
27.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
27.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
27.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
27.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
27.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
27.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
27.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
27.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
27.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
27.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
27.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
27.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
27.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
27.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
27.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
27.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
27.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
27.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
26.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
26.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
26.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
26.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
26.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
26.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
26.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
26.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
26.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
26.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
26.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
26.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
26.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
26.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
26.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
26.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
26.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
26.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
25.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
25.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
25.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
25.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
25.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
25.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
25.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
25.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
25.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
25.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
25.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
25.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
25.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
25.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
25.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
25.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
24.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
24.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
24.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
24.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
24.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
24.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
24.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
24.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
24.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
24.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
24.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
23.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
23.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
23.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
23.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
23.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
23.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
23.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
23.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
23.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
23.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
23.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
23.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
23.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
23.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
23.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
23.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
23.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
23.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
22.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
22.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
22.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
22.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
22.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
22.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
22.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
22.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
22.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
22.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
22.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
22.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
22.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
22.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
22.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
22.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
22.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
22.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
22.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
22.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
21.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
21.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
21.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
21.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
21.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
21.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
21.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
21.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
21.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
21.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
21.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
21.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
20.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
20.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
20.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
20.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
20.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
20.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
20.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
20.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
20.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
20.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
20.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
20.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
20.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
20.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
20.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
20.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
20.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
20.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
20.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
20.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
19.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
19.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
19.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
19.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
19.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
19.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
19.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
19.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
19.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
19.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
19.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
19.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
19.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
19.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
19.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
19.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
19.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
19.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
19.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
18.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
18.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
18.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
18.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
18.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
18.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
18.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
18.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
18.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
18.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
18.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
18.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
18.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
18.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
18.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
18.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
18.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
18.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
18.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
18.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
17.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
17.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
17.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
17.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
17.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
17.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
17.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
17.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
17.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
17.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
17.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
17.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
17.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
16.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
16.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
16.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
16.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
16.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
16.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
16.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
16.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
16.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
16.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
16.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
16.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
15.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
15.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
15.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
15.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
15.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
15.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
15.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
15.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
15.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
15.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
15.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
15.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
15.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
14.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
14.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
14.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
14.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
14.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
14.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
14.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
14.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
14.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
14.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
13.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
13.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
13.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
13.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
13.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
13.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
13.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
13.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
13.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
13.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
13.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
13.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
13.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
13.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
13.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
13.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
13.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
13.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
12.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
12.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
12.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
12.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
12.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
12.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
12.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
12.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
11.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
11.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
11.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
11.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
11.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
11.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
11.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
11.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
10.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
10.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
10.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
10.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
10.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
10.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
9.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
9.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
9.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
865
Tumor
1.4
1041
Tumor
0.9
227
Tumor
0.9
925
Tumor
0.9
513
Tumor
0.8
443
Tumor
0.7
537
Tumor
0.7
557
Tumor
0.6
553
Tumor
0.6
627
Tumor
0.6
221
Tumor
0.6
473
Tumor
0.6
1027
Tumor
0.6
685
Tumor
0.5
525
Tumor
0.5
231
Tumor
0.5
1025
Tumor
0.5
567
Tumor
0.5
533
Tumor
0.5
1013
Tumor
0.5
951
Tumor
0.5
883
Tumor
0.5
515
Tumor
0.5
477
Tumor
0.4
911
Tumor
0.4
715
Tumor
0.4
1031
Tumor
0.4
127
Tumor
0.4
267
Tumor
0.4
483
Tumor
0.4
861
Tumor
0.4
915
Tumor
0.4
465
Tumor
0.4
471
Tumor
0.4
615
Tumor
0.4
1045
Tumor
0.4
823
Tumor
0.4
745
Tumor
0.4
867
Tumor
0.3
727
Tumor
0.3
261
Tumor
0.3
491
Tumor
0.3
815
Tumor
0.3
411
Tumor
0.3
965
Tumor
0.3
641
Tumor
0.3
741
Tumor
0.3
913
Tumor
0.3
777
Tumor
0.3
123
Tumor
0.3
665
Tumor
0.3
493
Tumor
0.3
363
Tumor
0.3
873
Tumor
0.3
435
Tumor
0.3
977
Tumor
0.3
431
Tumor
0.3
425
Tumor
0.3
535
Tumor
0.3
171
Tumor
0.3
361
Tumor
0.2
663
Tumor
0.2
353
Tumor
0.2
724
Normal
0.2
746
Normal
0.2
523
Tumor
0.2
517
Tumor
0.2
921
Tumor
0.2
327
Tumor
0.2
135
Tumor
0.2
563
Tumor
0.2
423
Tumor
0.2
937
Tumor
0.2
851
Tumor
0.2
481
Tumor
0.2
868
Normal
0.2
955
Tumor
0.2
573
Tumor
0.1
145
Tumor
0.1
571
Tumor
0.1
415
Tumor
0.1
534
Normal
0.1
554
Normal
0.1
824
Normal
0.1
137
Tumor
0.1
448
Normal
0.1
864
Normal
0.1
461
Tumor
0.1
526
Normal
0.1
737
Tumor
0.1
1014
Normal
0.1
862
Normal
0.1
858
Normal
0.1
191
Tumor
0.1
484
Normal
0.1
922
Normal
0.1
162
Normal
0.1
351
Tumor
0.1
952
Normal
0.1
365
Tumor
0.1
695
Tumor
0.1
474
Normal
0.1
328
Normal
0.1
698
Normal
0.1
938
Normal
0.1
383
Tumor
0.1
944
Normal
0.1
738
Normal
0.1
451
Tumor
0.1
488
Normal
0.1
648
Normal
0.0
636
Normal
0.0
963
Tumor
0.0
421
Tumor
0.0
866
Normal
0.0
1015
Tumor
0.0
172
Normal
0.0
617
Tumor
0.0
285
Tumor
0.0
1032
Normal
0.0
964
Normal
0.0
728
Normal
0.0
686
Normal
0.0
128
Normal
0.0
546
Normal
0.0
968
Normal
0.0
878
Normal
0.0
148
Normal
0.0
912
Normal
0.0
1026
Normal
0.0
196
Normal
0.0
755
Tumor
0.0
528
Normal
0.0
212
Normal
0.0
882
Normal
0.0
957
Tumor
0.0
298
Normal
0.0
482
Normal
0.0
412
Normal
0.0
1021
Tumor
0.0
518
Normal
0.0
714
Normal
0.0
723
Tumor
0.0
696
Normal
0.0
857
Tumor
0.0
558
Normal
0.0
1043
Tumor
0.0
984
Normal
0.0
497
Tumor
0.0
863
Tumor
0.0
818
Normal
0.0
778
Normal
0.0
472
Normal
0.0
635
Tumor
0.0
278
Normal
0.0
918
Normal
0.0
367
Tumor
0.0
161
Tumor
0.0
516
Normal
0.0
195
Tumor
0.0
356
Normal
0.0
564
Normal
0.0
981
Tumor
0.0
257
Tumor
0.0
982
Normal
0.0
1028
Normal
0.0
881
Tumor
0.0
462
Normal
0.0
816
Normal
0.0
433
Tumor
0.0
416
Normal
0.0
428
Normal
0.0
956
Normal
0.0
953
Tumor
0.0
436
Normal
0.0
926
Normal
0.0
572
Normal
0.0
514
Normal
0.0
966
Normal
0.0
852
Normal
0.0
422
Normal
0.0
1016
Normal
0.0
142
Normal
-0.1
924
Normal
-0.1
358
Normal
-0.1
1046
Normal
-0.1
877
Tumor
-0.1
331
Tumor
-0.1
112
Tumor
-0.1
222
Normal
-0.1
785
Tumor
-0.1
786
Normal
-0.1
1022
Normal
-0.1
618
Normal
-0.1
742
Normal
-0.1
232
Normal
-0.1
494
Normal
-0.1
186
Normal
-0.1
342
Normal
-0.1
223
Tumor
-0.1
424
Normal
-0.1
664
Normal
-0.1
286
Normal
-0.1
524
Normal
-0.1
258
Normal
-0.1
113
Tumor
-0.1
464
Normal
-0.1
642
Normal
-0.1
228
Normal
-0.1
756
Normal
-0.1
187
Tumor
-0.1
111
Normal
-0.1
874
Normal
-0.1
983
Tumor
-0.1
271
Tumor
-0.1
364
Normal
-0.1
568
Normal
-0.1
958
Normal
-0.1
391
Tumor
-0.1
916
Normal
-0.1
312
Normal
-0.1
954
Normal
-0.1
313
Tumor
-0.1
132
Normal
-0.1
136
Normal
-0.1
697
Tumor
-0.1
616
Normal
-0.1
362
Normal
-0.1
721
Tumor
-0.1
284
Normal
-0.1
354
Normal
-0.1
884
Normal
-0.1
352
Normal
-0.1
314
Normal
-0.1
217
Tumor
-0.1
432
Normal
-0.1
1042
Normal
-0.1
666
Normal
-0.1
722
Normal
-0.1
214
Normal
-0.1
368
Normal
-0.1
662
Normal
-0.1
468
Normal
-0.1
262
Normal
-0.1
341
Tumor
-0.1
414
Normal
-0.1
487
Tumor
-0.1
914
Normal
-0.1
426
Normal
-0.1
923
Tumor
-0.1
376
Normal
-0.2
813
Tumor
-0.2
185
Tumor
-0.2
743
Tumor
-0.2
976
Normal
-0.2
1044
Normal
-0.2
218
Normal
-0.2
466
Normal
-0.2
452
Normal
-0.2
344
Normal
-0.2
138
Normal
-0.2
628
Normal
-0.2
538
Normal
-0.2
744
Normal
-0.2
366
Normal
-0.2
978
Normal
-0.2
817
Tumor
-0.2
716
Normal
-0.2
444
Normal
-0.2
131
Tumor
-0.2
224
Normal
-0.2
268
Normal
-0.2
545
Tumor
-0.2
427
Tumor
-0.2
713
Tumor
-0.2
574
Normal
-0.2
446
Normal
-0.2
395
Tumor
-0.2
297
Tumor
-0.2
124
Normal
-0.2
393
Tumor
-0.2
277
Tumor
-0.2
388
Normal
-0.2
394
Normal
-0.2
114
Normal
-0.2
332
Normal
-0.2
387
Tumor
-0.2
357
Tumor
-0.2
456
Normal
-0.2
478
Normal
-0.2
272
Normal
-0.2
396
Normal
-0.2
188
Normal
-0.2
975
Tumor
-0.2
492
Normal
-0.2
126
Normal
-0.2
213
Tumor
-0.3
527
Tumor
-0.3
384
Normal
-0.3
355
Tumor
-0.3
147
Tumor
-0.3
536
Normal
-0.3
392
Normal
-0.3
386
Normal
-0.3
647
Tumor
-0.3
385
Tumor
-0.3
445
Tumor
-0.3
447
Tumor
-0.3
814
Normal
-0.4
434
Normal
-0.4
146
Normal
-0.4
671
Tumor
-0.4
141
Tumor
-0.4
463
Tumor
-0.4
672
Normal
-0.4
467
Tumor
-0.4
943
Tumor
-0.4
413
Tumor
-0.5
498
Normal
-0.5
192
Normal
-0.5
967
Tumor
-0.5
375
Tumor
-0.5
455
Tumor
-0.5
125
Tumor
-0.5
661
Tumor
-0.6
283
Tumor
-0.6
211
Tumor
-0.6
917
Tumor
-0.7
311
Tumor
-0.7
343
Tumor
-0.8
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
