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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
IMPACT is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
31.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
30.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
25.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
19.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
18.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
17.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
16.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
16.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
15.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
15.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
15.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
15.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
14.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
14.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
14.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
13.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
13.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
13.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
13.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
13.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
12.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
12.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
12.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
12.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
12.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
12.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
12.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
12.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
11.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
11.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
11.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
11.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
11.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
11.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
11.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
11.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
11.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
11.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
11.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
10.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
10.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
10.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
10.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
10.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
10.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
10.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
10.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
10.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
10.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
10.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
10.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
10.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
10.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
10.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
9.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
9.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
9.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
9.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
9.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
9.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
9.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
9.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
9.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
9.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
9.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
9.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
9.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
9.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
9.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
9.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
9.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
9.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
9.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
8.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
8.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
8.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
8.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
8.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
8.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
8.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
8.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
8.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
8.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
8.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
8.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
8.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
8.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
8.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
8.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
8.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
8.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
8.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
8.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
8.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
8.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
7.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
7.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
7.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
7.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
7.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
7.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
7.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
7.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
7.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
7.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
7.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
7.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
7.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
7.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
7.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
7.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
7.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
7.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
7.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
7.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
7.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
7.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
7.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
7.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
7.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
7.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
7.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
7.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
6.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
6.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
6.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
6.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
6.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
6.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
6.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
6.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
6.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
6.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
6.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
6.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
6.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
6.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
6.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
6.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
6.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
6.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
6.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
6.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
6.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
6.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
6.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
6.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
6.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
6.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
6.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
6.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
6.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
6.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
5.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
5.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
5.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
5.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
5.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
5.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
5.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
5.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
5.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
5.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
5.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
5.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
5.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
5.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
5.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
5.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
5.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
5.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
5.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
5.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
5.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
5.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
5.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
5.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
5.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
5.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
5.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
5.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
5.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
5.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
5.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
5.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
5.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
5.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
5.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
5.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
5.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
5.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
5.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
4.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
4.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
4.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
4.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
4.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
4.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
4.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
4.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
4.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
4.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
4.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
4.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
4.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
4.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
4.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
4.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
4.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
4.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
4.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
4.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
4.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
4.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
4.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
4.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
4.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
4.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
4.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
4.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
4.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
4.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
4.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
4.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
4.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
4.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
4.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
4.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
3.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
3.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
3.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
3.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
3.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
3.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
3.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
3.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
3.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
3.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
3.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
3.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
3.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
3.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
3.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
3.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
3.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
3.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
3.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
3.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
3.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
3.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
3.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
3.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
3.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
3.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
3.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
3.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
3.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
3.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
3.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
3.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
3.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
2.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
2.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
2.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
2.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
2.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
2.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
2.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
2.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
2.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
2.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
2.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
2.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
2.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
1.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
1.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
1.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
1.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
1.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
1.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
1.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
1.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
1.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
1.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
1.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
IMPACT is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.9
Number of samples
231
Samples
Sample
Description
TPM
DO45205
0 years, female, NA, stage:2, dead, 90 days
24.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
20.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
18.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
17.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
15.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
15.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
14.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
14.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
13.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
13.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
13.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
13.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
12.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
12.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
12.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
12.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
12.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
11.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
11.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
11.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
11.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
11.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
11.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
11.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
11.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
11.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
11.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
11.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
11.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
10.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
10.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
10.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
10.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
10.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
10.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
10.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
10.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
10.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
9.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
9.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
9.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
9.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
9.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
9.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
9.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
9.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
9.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
9.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
9.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
9.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
9.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
9.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
9.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
8.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
8.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
8.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
8.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
8.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
8.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
8.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
8.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
8.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
8.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
8.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
8.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
8.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
8.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
8.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
8.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
8.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
8.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
8.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
8.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
7.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
7.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
7.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
7.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
7.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
7.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
7.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
7.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
7.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
7.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
7.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
7.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
7.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
7.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
7.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
7.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
7.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
7.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
7.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
7.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
7.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
7.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
7.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
7.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
7.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
7.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
7.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
7.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
7.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
6.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
6.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
6.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
6.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
6.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
6.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
6.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
6.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
6.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
6.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
6.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
6.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
6.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
6.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
6.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
6.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
6.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
6.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
6.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
6.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
6.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
6.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
6.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
6.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
5.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
5.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
5.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
5.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
5.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
5.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
5.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
5.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
5.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
5.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
5.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
5.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
5.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
5.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
5.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
5.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
5.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
5.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
5.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
5.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
5.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
5.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
5.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
5.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
5.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
5.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
5.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
5.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
5.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
5.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
5.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
5.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
5.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
5.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
5.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
4.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
4.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
4.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
4.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
4.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
4.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
4.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
4.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
4.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
4.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
4.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
4.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
4.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
4.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
4.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
4.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
4.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
4.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
4.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
4.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
4.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
4.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
4.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
4.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
4.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
4.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
3.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
3.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
3.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
3.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
3.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
3.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
3.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
3.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
3.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
3.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
3.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
3.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
3.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
3.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
3.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
3.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
3.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
3.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
3.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
3.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
3.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
3.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
3.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
2.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
2.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
2.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
2.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
2.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
2.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
2.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
2.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
2.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
2.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
2.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
2.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
2.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
2.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
2.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
2.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
2.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
1.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
1.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
515
Tumor
0.8
1015
Tumor
0.7
663
Tumor
0.6
1045
Tumor
0.6
527
Tumor
0.5
952
Normal
0.5
461
Tumor
0.5
867
Tumor
0.5
465
Tumor
0.5
423
Tumor
0.5
132
Normal
0.5
545
Tumor
0.5
298
Normal
0.4
445
Tumor
0.4
956
Normal
0.4
627
Tumor
0.4
436
Normal
0.4
863
Tumor
0.4
513
Tumor
0.4
815
Tumor
0.4
128
Normal
0.4
211
Tumor
0.4
858
Normal
0.4
516
Normal
0.4
432
Normal
0.4
446
Normal
0.4
567
Tumor
0.4
743
Tumor
0.4
976
Normal
0.4
231
Tumor
0.4
518
Normal
0.4
354
Normal
0.3
755
Tumor
0.3
386
Normal
0.3
738
Normal
0.3
342
Normal
0.3
422
Normal
0.3
563
Tumor
0.3
268
Normal
0.3
365
Tumor
0.3
728
Normal
0.3
146
Normal
0.3
1021
Tumor
0.3
425
Tumor
0.3
497
Tumor
0.3
192
Normal
0.3
955
Tumor
0.3
421
Tumor
0.3
1046
Normal
0.3
573
Tumor
0.3
393
Tumor
0.3
444
Normal
0.3
911
Tumor
0.3
477
Tumor
0.3
278
Normal
0.3
416
Normal
0.3
943
Tumor
0.3
232
Normal
0.3
723
Tumor
0.3
487
Tumor
0.3
327
Tumor
0.3
376
Normal
0.3
136
Normal
0.3
568
Normal
0.3
138
Normal
0.3
424
Normal
0.3
358
Normal
0.3
526
Normal
0.2
362
Normal
0.2
546
Normal
0.2
456
Normal
0.2
695
Tumor
0.2
357
Tumor
0.2
777
Tumor
0.2
744
Normal
0.2
615
Tumor
0.2
968
Normal
0.2
818
Normal
0.2
434
Normal
0.2
746
Normal
0.2
474
Normal
0.2
574
Normal
0.2
554
Normal
0.2
258
Normal
0.2
413
Tumor
0.2
195
Tumor
0.2
882
Normal
0.2
257
Tumor
0.2
864
Normal
0.2
533
Tumor
0.2
356
Normal
0.2
262
Normal
0.2
953
Tumor
0.2
824
Normal
0.2
481
Tumor
0.2
648
Normal
0.2
664
Normal
0.2
874
Normal
0.2
414
Normal
0.2
366
Normal
0.2
714
Normal
0.2
452
Normal
0.2
523
Tumor
0.2
698
Normal
0.2
662
Normal
0.2
172
Normal
0.2
428
Normal
0.2
878
Normal
0.2
312
Normal
0.2
1016
Normal
0.2
277
Tumor
0.2
564
Normal
0.2
394
Normal
0.2
498
Normal
0.2
462
Normal
0.2
967
Tumor
0.2
463
Tumor
0.2
618
Normal
0.2
914
Normal
0.2
965
Tumor
0.2
538
Normal
0.2
924
Normal
0.2
915
Tumor
0.2
865
Tumor
0.2
427
Tumor
0.2
388
Normal
0.2
636
Normal
0.2
468
Normal
0.2
375
Tumor
0.2
484
Normal
0.2
272
Normal
0.2
727
Tumor
0.2
141
Tumor
0.2
572
Normal
0.2
966
Normal
0.2
311
Tumor
0.2
162
Normal
0.2
131
Tumor
0.2
716
Normal
0.1
332
Normal
0.1
392
Normal
0.1
114
Normal
0.1
384
Normal
0.1
466
Normal
0.1
1026
Normal
0.1
558
Normal
0.1
368
Normal
0.1
642
Normal
0.1
412
Normal
0.1
964
Normal
0.1
528
Normal
0.1
742
Normal
0.1
666
Normal
0.1
124
Normal
0.1
672
Normal
0.1
473
Tumor
0.1
862
Normal
0.1
364
Normal
0.1
661
Tumor
0.1
873
Tumor
0.1
113
Tumor
0.1
938
Normal
0.1
352
Normal
0.1
137
Tumor
0.1
696
Normal
0.1
647
Tumor
0.1
223
Tumor
0.1
448
Normal
0.1
482
Normal
0.1
464
Normal
0.1
861
Tumor
0.1
148
Normal
0.1
715
Tumor
0.1
866
Normal
0.1
328
Normal
0.1
1041
Tumor
0.1
126
Normal
0.1
975
Tumor
0.1
142
Normal
0.1
785
Tumor
0.1
884
Normal
0.1
741
Tumor
0.1
478
Normal
0.1
214
Normal
0.1
344
Normal
0.1
524
Normal
0.1
616
Normal
0.1
297
Tumor
0.1
1042
Normal
0.1
212
Normal
0.1
635
Tumor
0.1
455
Tumor
0.1
112
Tumor
0.1
1013
Tumor
0.1
954
Normal
0.1
977
Tumor
0.1
314
Normal
0.1
488
Normal
0.1
628
Normal
0.1
722
Normal
0.1
756
Normal
0.1
534
Normal
0.1
472
Normal
0.1
188
Normal
0.1
982
Normal
0.1
493
Tumor
0.1
284
Normal
0.1
127
Tumor
0.1
868
Normal
0.1
222
Normal
0.1
916
Normal
0.1
944
Normal
0.1
857
Tumor
0.1
514
Normal
0.0
492
Normal
0.0
467
Tumor
0.0
778
Normal
0.0
494
Normal
0.0
228
Normal
0.0
671
Tumor
0.0
361
Tumor
0.0
286
Normal
0.0
913
Tumor
0.0
912
Normal
0.0
161
Tumor
0.0
491
Tumor
0.0
283
Tumor
0.0
426
Normal
0.0
713
Tumor
0.0
1028
Normal
0.0
922
Normal
0.0
111
Normal
0.0
396
Normal
0.0
433
Tumor
0.0
926
Normal
0.0
958
Normal
0.0
737
Tumor
0.0
918
Normal
0.0
213
Tumor
0.0
745
Tumor
0.0
196
Normal
0.0
1022
Normal
0.0
271
Tumor
0.0
981
Tumor
0.0
261
Tumor
0.0
525
Tumor
0.0
816
Normal
0.0
415
Tumor
0.0
353
Tumor
0.0
686
Normal
0.0
411
Tumor
0.0
447
Tumor
0.0
367
Tumor
0.0
387
Tumor
-0.1
1044
Normal
-0.1
471
Tumor
-0.1
984
Normal
-0.1
483
Tumor
-0.1
217
Tumor
-0.1
383
Tumor
-0.1
881
Tumor
-0.1
921
Tumor
-0.1
218
Normal
-0.1
814
Normal
-0.1
786
Normal
-0.1
978
Normal
-0.1
517
Tumor
-0.1
1032
Normal
-0.1
145
Tumor
-0.1
343
Tumor
-0.1
224
Normal
-0.1
925
Tumor
-0.1
443
Tumor
-0.1
852
Normal
-0.2
536
Normal
-0.2
355
Tumor
-0.2
1014
Normal
-0.2
363
Tumor
-0.2
451
Tumor
-0.2
171
Tumor
-0.2
395
Tumor
-0.2
685
Tumor
-0.2
883
Tumor
-0.2
391
Tumor
-0.2
923
Tumor
-0.2
351
Tumor
-0.2
721
Tumor
-0.2
697
Tumor
-0.2
267
Tumor
-0.2
313
Tumor
-0.2
665
Tumor
-0.2
963
Tumor
-0.2
331
Tumor
-0.2
817
Tumor
-0.2
186
Normal
-0.3
571
Tumor
-0.3
957
Tumor
-0.3
431
Tumor
-0.3
1043
Tumor
-0.3
1031
Tumor
-0.3
877
Tumor
-0.3
917
Tumor
-0.3
385
Tumor
-0.3
1027
Tumor
-0.3
123
Tumor
-0.3
823
Tumor
-0.4
535
Tumor
-0.4
557
Tumor
-0.4
813
Tumor
-0.4
191
Tumor
-0.4
187
Tumor
-0.4
135
Tumor
-0.4
553
Tumor
-0.5
951
Tumor
-0.5
937
Tumor
-0.5
221
Tumor
-0.5
185
Tumor
-0.5
125
Tumor
-0.5
641
Tumor
-0.5
1025
Tumor
-0.6
724
Normal
-0.6
285
Tumor
-0.6
227
Tumor
-0.7
983
Tumor
-0.7
435
Tumor
-0.7
617
Tumor
-0.7
147
Tumor
-0.8
341
Tumor
-0.9
537
Tumor
-1.1
851
Tumor
-1.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
