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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MSI2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
31.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
28.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
28.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
26.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
26.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
26.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
25.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
24.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
24.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
23.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
21.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
19.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
18.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
18.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
18.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
17.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
16.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
16.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
16.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
15.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
15.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
14.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
14.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
14.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
13.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
13.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
13.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
13.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
13.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
13.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
13.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
12.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
12.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
12.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
11.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
11.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
11.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
11.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
10.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
10.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
10.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
10.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
10.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
9.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
9.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
9.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
9.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
9.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
9.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
9.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
9.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
9.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
9.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
9.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
9.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
9.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
9.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
9.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
9.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
8.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
8.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
8.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
8.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
8.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
8.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
8.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
7.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
7.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
7.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
7.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
7.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
7.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
7.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
7.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
7.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
7.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
7.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
7.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
7.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
7.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
7.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
7.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
7.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
7.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
7.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
7.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
7.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
7.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
6.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
6.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
6.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
6.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
6.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
6.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
6.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
6.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
6.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
6.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
6.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
6.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
6.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
6.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
6.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
6.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
6.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
6.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
6.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
6.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
6.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
6.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
6.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
6.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
6.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
6.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
5.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
5.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
5.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
5.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
5.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
5.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
5.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
5.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
5.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
5.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
5.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
5.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
5.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
5.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
5.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
5.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
5.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
5.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
5.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
5.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
5.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
5.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
5.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
5.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
5.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
5.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
5.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
5.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
5.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
5.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
5.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
5.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
5.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
5.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
5.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
5.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
5.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
5.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
4.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
4.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
4.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
4.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
4.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
4.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
4.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
4.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
4.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
4.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
4.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
4.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
4.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
4.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
4.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
4.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
4.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
4.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
4.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
4.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
4.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
4.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
4.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
4.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
4.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
4.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
4.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
4.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
4.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
4.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
4.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
4.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
4.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
4.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
4.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
4.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
4.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
4.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
4.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
4.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
4.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
4.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
4.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
4.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
4.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
4.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
4.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
3.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
3.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
3.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
3.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
3.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
3.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
3.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
3.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
3.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
3.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
3.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
3.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
3.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
3.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
3.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
3.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
3.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
3.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
3.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
3.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
3.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
3.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
3.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
3.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
3.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
2.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
2.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
2.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
2.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
2.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
2.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
2.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
2.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
2.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
2.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
2.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
2.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
2.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
2.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
2.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
2.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
2.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
2.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
2.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
2.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
2.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
2.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
2.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
2.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
2.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
2.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
2.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
2.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
2.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
2.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
2.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
2.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
2.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
2.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
2.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
2.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
2.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
2.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
2.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
2.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
2.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
2.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
2.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
2.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
2.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
1.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
1.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
1.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
1.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
1.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
1.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
1.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
1.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
1.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
1.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
1.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
1.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
1.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
1.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
1.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
1.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
1.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
1.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
1.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
1.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
1.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
1.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
0.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
0.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
0.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
0.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MSI2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
3.8
Number of samples
231
Samples
Sample
Description
TPM
DO45279
0 years, male, NA, stage:3, alive, 1290 days
29.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
28.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
15.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
12.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
11.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
11.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
11.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
11.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
10.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
10.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
10.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
10.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
9.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
9.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
9.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
9.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
8.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
8.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
8.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
8.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
8.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
8.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
7.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
7.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
7.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
7.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
7.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
7.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
7.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
6.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
6.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
6.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
6.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
6.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
6.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
6.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
6.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
6.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
6.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
6.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
6.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
6.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
6.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
5.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
5.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
5.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
5.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
5.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
5.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
5.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
5.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
5.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
5.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
5.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
5.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
5.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
5.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
4.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
4.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
4.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
4.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
4.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
4.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
4.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
4.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
4.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
4.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
4.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
4.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
4.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
4.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
4.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
4.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
4.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
4.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
4.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
4.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
4.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
3.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
3.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
3.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
3.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
3.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
3.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
3.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
3.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
3.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
3.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
3.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
3.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
3.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
3.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
3.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
3.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
3.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
3.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
3.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
3.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
3.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
3.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
3.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
3.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
3.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
3.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
3.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
3.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
3.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
3.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
3.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
3.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
3.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
3.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
3.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
2.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
2.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
2.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
2.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
2.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
2.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
2.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
2.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
2.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
2.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
2.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
2.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
2.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
2.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
2.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
2.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
2.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
2.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
2.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
2.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
2.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
2.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
2.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
2.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
2.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
2.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
2.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
2.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
2.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
2.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
2.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
2.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
2.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
2.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
2.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
2.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
2.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
2.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
2.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
2.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
2.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
2.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
2.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
2.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
2.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
2.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
2.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
2.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
2.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
1.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
1.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
1.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
1.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
1.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
1.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
1.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
1.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
1.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
1.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
1.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
1.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
1.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
1.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
1.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
1.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
1.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
1.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
1.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
1.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
1.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
1.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
1.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
1.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
1.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
1.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
1.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
1.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
1.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
1.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
1.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
1.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
1.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
1.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
1.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
1.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
1.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
1.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
1.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
1.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
1.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
1.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
1.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
1.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
1.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
1.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
1.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
0.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
0.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
0.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
0.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
0.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
0.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
0.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
0.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
0.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
0.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
0.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
0.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
0.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
0.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
0.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
0.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
0.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
0.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
743
Tumor
1.3
567
Tumor
1.1
277
Tumor
1.0
695
Tumor
0.9
445
Tumor
0.9
135
Tumor
0.9
367
Tumor
0.8
1021
Tumor
0.8
131
Tumor
0.8
571
Tumor
0.8
965
Tumor
0.8
331
Tumor
0.7
443
Tumor
0.7
355
Tumor
0.7
497
Tumor
0.7
967
Tumor
0.7
427
Tumor
0.7
433
Tumor
0.7
271
Tumor
0.7
285
Tumor
0.7
685
Tumor
0.7
387
Tumor
0.7
257
Tumor
0.7
375
Tumor
0.7
1027
Tumor
0.6
425
Tumor
0.6
463
Tumor
0.6
813
Tumor
0.6
161
Tumor
0.6
573
Tumor
0.6
395
Tumor
0.6
661
Tumor
0.6
737
Tumor
0.6
877
Tumor
0.5
137
Tumor
0.5
745
Tumor
0.5
815
Tumor
0.5
413
Tumor
0.5
431
Tumor
0.5
977
Tumor
0.5
917
Tumor
0.4
537
Tumor
0.4
357
Tumor
0.4
221
Tumor
0.4
421
Tumor
0.4
327
Tumor
0.4
535
Tumor
0.4
1025
Tumor
0.4
211
Tumor
0.4
393
Tumor
0.4
957
Tumor
0.4
975
Tumor
0.4
525
Tumor
0.4
297
Tumor
0.4
545
Tumor
0.4
951
Tumor
0.3
981
Tumor
0.3
721
Tumor
0.3
983
Tumor
0.3
455
Tumor
0.3
487
Tumor
0.3
953
Tumor
0.3
125
Tumor
0.3
921
Tumor
0.3
385
Tumor
0.3
515
Tumor
0.3
517
Tumor
0.3
865
Tumor
0.3
383
Tumor
0.3
147
Tumor
0.3
351
Tumor
0.3
671
Tumor
0.3
471
Tumor
0.2
477
Tumor
0.2
311
Tumor
0.2
881
Tumor
0.2
343
Tumor
0.2
724
Normal
0.2
641
Tumor
0.2
527
Tumor
0.2
213
Tumor
0.2
923
Tumor
0.2
411
Tumor
0.2
563
Tumor
0.2
943
Tumor
0.2
361
Tumor
0.2
741
Tumor
0.2
187
Tumor
0.1
713
Tumor
0.1
127
Tumor
0.1
447
Tumor
0.1
1043
Tumor
0.1
727
Tumor
0.1
883
Tumor
0.1
523
Tumor
0.1
1013
Tumor
0.1
665
Tumor
0.1
823
Tumor
0.1
478
Normal
0.1
465
Tumor
0.1
192
Normal
0.1
814
Normal
0.1
444
Normal
0.1
715
Tumor
0.0
851
Tumor
0.0
191
Tumor
0.0
963
Tumor
0.0
451
Tumor
0.0
491
Tumor
0.0
817
Tumor
0.0
391
Tumor
0.0
615
Tumor
0.0
1031
Tumor
0.0
188
Normal
0.0
363
Tumor
0.0
553
Tumor
0.0
341
Tumor
0.0
777
Tumor
0.0
384
Normal
0.0
396
Normal
0.0
1041
Tumor
0.0
867
Tumor
0.0
313
Tumor
0.0
113
Tumor
0.0
916
Normal
0.0
483
Tumor
0.0
913
Tumor
0.0
185
Tumor
-0.1
467
Tumor
-0.1
697
Tumor
-0.1
924
Normal
-0.1
386
Normal
-0.1
558
Normal
-0.1
268
Normal
-0.1
434
Normal
-0.1
968
Normal
-0.1
332
Normal
-0.1
145
Tumor
-0.1
123
Tumor
-0.1
627
Tumor
-0.1
283
Tumor
-0.1
426
Normal
-0.1
481
Tumor
-0.1
128
Normal
-0.1
146
Normal
-0.1
984
Normal
-0.1
312
Normal
-0.1
314
Normal
-0.1
414
Normal
-0.1
456
Normal
-0.1
574
Normal
-0.1
744
Normal
-0.1
955
Tumor
-0.1
162
Normal
-0.2
616
Normal
-0.2
466
Normal
-0.2
392
Normal
-0.2
217
Tumor
-0.2
388
Normal
-0.2
424
Normal
-0.2
564
Normal
-0.2
394
Normal
-0.2
636
Normal
-0.2
126
Normal
-0.2
628
Normal
-0.2
422
Normal
-0.2
352
Normal
-0.2
874
Normal
-0.2
462
Normal
-0.2
212
Normal
-0.2
278
Normal
-0.2
172
Normal
-0.2
112
Tumor
-0.2
223
Tumor
-0.2
468
Normal
-0.2
536
Normal
-0.2
966
Normal
-0.2
1016
Normal
-0.2
852
Normal
-0.2
958
Normal
-0.2
353
Tumor
-0.2
214
Normal
-0.2
473
Tumor
-0.2
261
Tumor
-0.2
111
Normal
-0.2
148
Normal
-0.2
452
Normal
-0.2
982
Normal
-0.2
461
Tumor
-0.2
617
Tumor
-0.2
114
Normal
-0.2
1014
Normal
-0.2
742
Normal
-0.2
124
Normal
-0.2
964
Normal
-0.2
464
Normal
-0.2
925
Tumor
-0.2
785
Tumor
-0.2
1046
Normal
-0.2
716
Normal
-0.2
141
Tumor
-0.2
642
Normal
-0.2
863
Tumor
-0.2
136
Normal
-0.2
538
Normal
-0.2
365
Tumor
-0.2
186
Normal
-0.2
978
Normal
-0.2
976
Normal
-0.2
284
Normal
-0.3
568
Normal
-0.3
227
Tumor
-0.3
492
Normal
-0.3
696
Normal
-0.3
1022
Normal
-0.3
195
Tumor
-0.3
672
Normal
-0.3
428
Normal
-0.3
816
Normal
-0.3
1028
Normal
-0.3
884
Normal
-0.3
786
Normal
-0.3
132
Normal
-0.3
912
Normal
-0.3
868
Normal
-0.3
446
Normal
-0.3
738
Normal
-0.3
344
Normal
-0.3
911
Tumor
-0.3
298
Normal
-0.3
272
Normal
-0.3
778
Normal
-0.3
423
Tumor
-0.3
664
Normal
-0.3
918
Normal
-0.3
218
Normal
-0.3
922
Normal
-0.3
516
Normal
-0.3
572
Normal
-0.3
412
Normal
-0.3
1015
Tumor
-0.3
498
Normal
-0.3
362
Normal
-0.3
648
Normal
-0.3
472
Normal
-0.3
436
Normal
-0.3
714
Normal
-0.3
722
Normal
-0.3
368
Normal
-0.3
666
Normal
-0.3
686
Normal
-0.3
746
Normal
-0.3
435
Tumor
-0.3
954
Normal
-0.3
356
Normal
-0.3
286
Normal
-0.3
232
Normal
-0.3
861
Tumor
-0.3
528
Normal
-0.3
952
Normal
-0.3
824
Normal
-0.3
864
Normal
-0.3
228
Normal
-0.3
882
Normal
-0.3
432
Normal
-0.3
376
Normal
-0.3
138
Normal
-0.3
858
Normal
-0.3
546
Normal
-0.3
474
Normal
-0.3
1026
Normal
-0.3
926
Normal
-0.3
364
Normal
-0.3
662
Normal
-0.3
482
Normal
-0.3
524
Normal
-0.3
224
Normal
-0.3
818
Normal
-0.4
262
Normal
-0.4
1032
Normal
-0.4
728
Normal
-0.4
416
Normal
-0.4
354
Normal
-0.4
866
Normal
-0.4
222
Normal
-0.4
526
Normal
-0.4
944
Normal
-0.4
723
Tumor
-0.4
342
Normal
-0.4
231
Tumor
-0.4
756
Normal
-0.4
328
Normal
-0.4
618
Normal
-0.4
258
Normal
-0.4
196
Normal
-0.4
1042
Normal
-0.4
1044
Normal
-0.4
755
Tumor
-0.4
358
Normal
-0.4
142
Normal
-0.4
488
Normal
-0.4
415
Tumor
-0.4
448
Normal
-0.5
494
Normal
-0.5
1045
Tumor
-0.5
862
Normal
-0.5
366
Normal
-0.5
514
Normal
-0.5
698
Normal
-0.5
534
Normal
-0.5
857
Tumor
-0.5
554
Normal
-0.5
484
Normal
-0.5
878
Normal
-0.5
518
Normal
-0.5
533
Tumor
-0.5
938
Normal
-0.5
956
Normal
-0.5
914
Normal
-0.5
915
Tumor
-0.6
635
Tumor
-0.6
493
Tumor
-0.8
647
Tumor
-0.8
171
Tumor
-0.9
873
Tumor
-1.0
557
Tumor
-1.0
513
Tumor
-1.2
267
Tumor
-1.3
663
Tumor
-1.4
937
Tumor
-1.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
