BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:23.7 nTPM
HPA Brain:37.5 nTPM
GTEx:23.7 nTPM
FANTOM5:38.7 Scaled Tags Per Million
Pig:38.2 nTPM
Mouse:18.8 nTPM
Allen mouse:8.7 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi 37.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 32.4
2846 Female, age 79, unknown 38.2
1857 Female, age 85, left hemisphere 36.0
1781 Male, age 74, unknown 35.6
2290 Female, age 72, unknown 35.6
1854 Male, age 80, left hemisphere 33.7
2481 Female, age 94, left hemisphere 28.8
2288 Male, age 75, left hemisphere 27.4
2289 Male, age 61, right hemisphere 24.2
Globus pallidus, externus
nTPM: 23.7
2395 Male, age 75, both hemispheres 31.1
2772 Female, age 79, unknown 25.9
1996 Male, age 80, right hemisphere 22.1
2567 Female, age 72, unknown 21.5
2646 Male, age 61, right hemisphere 17.7
Globus pallidus, internus
nTPM: 24.3
2287 Male, age 75, right hemisphere 28.9
2483 Female, age 94, right hemisphere 28.2
2037 Male, age 80, right hemisphere 23.5
1818 Male, age 74, unknown 22.9
2778 Female, age 91, both hemispheres 22.5
2111 Female, age 85, right hemisphere 22.2
2566 Female, age 72, unknown 21.7
Nucleus accumbens
nTPM: 36.3
1856 Female, age 91, right hemisphere 43.7
1783 Male, age 74, unknown 42.5
2824 Male, age 61, right hemisphere 38.6
1806 Female, age 85, left hemisphere 37.9
2698 Female, age 72, unknown 35.7
2286 Male, age 75, left hemisphere 34.0
2391 Female, age 94, left hemisphere 31.0
2732 Male, age 80, right hemisphere 26.7
Nucleus basalis of Meynert
nTPM: 26.9
2393 Male, age 80, right hemisphere 31.9
2484 Female, age 94, left hemisphere 28.6
2821 Male, age 75, both hemispheres 27.9
2569 Male, age 61, both hemispheres 19.1
Nucleus of the diagonal band
nTPM: 37.5
2775 Male, age 80, right hemisphere 39.3
2029 Male, age 61, right hemisphere 38.3
1812 Female, age 91, both hemispheres 37.7
2195 Female, age 85, both hemispheres 36.3
1979 Male, age 74, unknown 35.8
Putamen
nTPM: 31.6
1937 Female, age 91, right hemisphere 36.6
1838 Male, age 80, right hemisphere 35.6
1829 Male, age 74, unknown 35.5
2466 Female, age 79, unknown 35.2
2482 Female, age 94, left hemisphere 28.2
2647 Male, age 75, left hemisphere 25.1
2489 Female, age 72, unknown 24.8
Septal nuclei
nTPM: 34.1
2031 Female, age 72, unknown 42.6
1960 Male, age 74, unknown 38.4
2009 Female, age 91, both hemispheres 37.9
2629 Female, age 94, right hemisphere 33.3
2059 Female, age 85, both hemispheres 30.7
2199 Male, age 80, right hemisphere 29.8
2394 Male, age 61, left hemisphere 25.8
Stria terminalis, bed nucleus
nTPM: 33.2
1974 Female, age 91, both hemispheres 37.0
2486 Female, age 94, both hemispheres 33.2
2201 Male, age 74, unknown 29.3

BASAL GANGLIA - GTEx RNA-seqi
Max subtype nTPMi 23.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 19.2
Samples: 246

Max nTPM: 40.6
Min nTPM: 11.0
Std nTPM: 4.5
Median nTPM: 18.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 40.6
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 31.4
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 31.4
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 29.8
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 29.5
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 29.3
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 29.1
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 28.7
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 28.5
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 28.4
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 28.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 23.7
Samples: 246

Max nTPM: 36.5
Min nTPM: 11.7
Std nTPM: 5.9
Median nTPM: 24.4
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 36.5
GTEX-13RTJ-0011-R6a-SM-5SI74 60-69 years, male 36.0
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 35.3
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 35.3
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 34.6
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 34.2
GTEX-14BIM-0011-R6b-SM-5S2VB 60-69 years, female 33.7
GTEX-14BMV-0011-R6b-SM-5YY9I 50-59 years, male 33.6
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 33.6
GTEX-13VXU-0011-R6a-SM-5SI71 50-59 years, male 33.2
GTEX-12WSC-0011-R6b-SM-5LU99 50-59 years, male 33.0
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Brain - Putamen (basal ganglia)
Average nTPM: 18.2
Samples: 205

Max nTPM: 29.8
Min nTPM: 10.1
Std nTPM: 4.3
Median nTPM: 17.2
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 29.8
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 29.8
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 29.7
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 29.5
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 28.7
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 28.3
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 28.2
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 27.7
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 27.7
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 27.2
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 26.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 38.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 33.7
FF:10164-103B2 76 years, female 33.7
Nucleus accumbens
Scaled Tags Per Million: 30.1
FF:10037-101F1 23-56 years, mixed 30.1
Putamen
Scaled Tags Per Million: 38.7
FF:10176-103C5 60 years, female 38.7
Globus pallidus
Scaled Tags Per Million: 14.7
FF:10161-103A8 76 years, female 19.3
FF:10175-103C4 60 years, female 10.2

BASAL GANGLIA - Pig RNA-seqi
Max subtype nTPMi 38.2
Pig sample Sample description nTPM
Caudate
nTPM: 35.0
Samples: 4

Max nTPM: 37.7
Min nTPM: 33.7
Sample A Female 33.9
Sample B Female 33.7
Sample C Male 37.7
Sample D Male 34.8
Putamen
nTPM: 38.2
Samples: 4

Max nTPM: 43.8
Min nTPM: 33.9
Sample A Female 33.9
Sample B Female 36.5
Sample C Male 43.8
Sample D Male 38.6
Septum
nTPM: 34.1
Samples: 4

Max nTPM: 36.5
Min nTPM: 32.5
Sample A Female 36.5
Sample B Female 32.5
Sample C Male 33.0
Sample D Male 34.5
Ventral pallidum
nTPM: 34.0
Samples: 4

Max nTPM: 35.9
Min nTPM: 31.6
Sample A Female 35.9
Sample B Female 33.6
Sample C Male 31.6
Sample D Male 35.0

BASAL GANGLIA - Mouse RNA-seqi
Max subtype nTPMi 18.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 18.1
Samples: 4

Max nTPM: 19.4
Min nTPM: 16.9
Sample A Male 19.4
Sample B Male 18.4
Sample C Female 16.9
Sample D Female 17.7
Septum
nTPM: 18.8
Samples: 4

Max nTPM: 20.4
Min nTPM: 17.3
Sample A Male 20.4
Sample B Male 17.3
Sample C Female 17.9
Sample D Female 19.7
Ventral forebrain
nTPM: 18.8
Samples: 4

Max nTPM: 19.3
Min nTPM: 17.7
Sample A Male 19.3
Sample B Male 19.3
Sample C Female 17.7
Sample D Female 18.8

BASAL GANGLIA - Allen Mouse ISHi
Max subtype Expression energyi 8.7
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 8.7
69290704 Antisense, RP_050407_04_E10, Mouse strain C57BL/6J (56 days, male) 8.7
Pallidum
Expression energy: 6.6
69290704 Antisense, RP_050407_04_E10, Mouse strain C57BL/6J (56 days, male) 6.6

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