MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:15.4 nTPM
HPA Brain:34.8 nTPM
GTEx:15.4 nTPM
FANTOM5:27.2 Scaled Tags Per Million
Pig:7.4 nTPM
Mouse:5.1 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 34.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 24.4
2411 Female, age 72, unknown 51.9
2219 Male, age 76, both hemispheres 35.6
1830 Male, age 51, unknown 26.6
1833 Male, age 53, unknown 22.9
2666 Male, age 74, left hemisphere 22.3
1827 Male, age 72, unknown 20.1
1870 Female, age 42, unknown 20.1
2019 Male, age 18, unknown 18.7
2586 Male, age 75, left hemisphere 14.5
2828 Female, age 72, unknown 11.2
Dorsal raphe nucleus
nTPM: 17.8
2750 Male, age 76, both hemispheres 22.4
2047 Male, age 72, unknown 20.9
2016 Female, age 72, unknown 18.9
1828 Male, age 53, unknown 15.6
2298 Female, age 72, unknown 11.0
Inferior colliculus
nTPM: 18.6
2849 Male, age 72, unknown 25.4
1848 Female, age 42, unknown 17.9
1890 Male, age 53, unknown 17.9
2097 Female, age 72, unknown 13.2
Median raphe nucleus
nTPM: 34.8
2220 Male, age 76, midline 34.8
Periaquaductal grey, anterior
nTPM: 28.7
2502 Female, age 75, unknown 39.3
1947 Male, age 18, unknown 30.9
1795 Male, age 51, unknown 15.9
Periaquaductal grey, dorsal
nTPM: 21.0
2464 Female, age 72, unknown 25.0
2850 Male, age 76, both hemispheres 22.2
1840 Male, age 53, unknown 19.4
1831 Male, age 72, unknown 17.4
Periaquaductal grey, lateral
nTPM: 20.7
2053 Male, age 18, unknown 25.2
2140 Male, age 76, both hemispheres 18.8
2272 Male, age 74, both hemispheres 17.9
Pretectal area
nTPM: 17.7
2224 Female, age 72, unknown 25.9
1944 Female, age 72, unknown 18.8
2825 Male, age 18, unknown 18.4
2316 Male, age 76, right hemisphere 17.8
2667 Female, age 75, unknown 17.3
1815 Male, age 53, unknown 17.1
2007 Male, age 72, unknown 16.8
1816 Male, age 51, unknown 16.2
2407 Male, age 75, both hemispheres 16.2
1817 Female, age 42, unknown 15.8
2273 Male, age 74, both hemispheres 14.4
Red nucleus
nTPM: 15.0
1954 Female, age 42, unknown 17.1
2503 Female, age 72, unknown 16.4
1904 Male, age 53, unknown 16.1
2227 Male, age 72, unknown 16.1
2823 Male, age 76, right hemisphere 16.1
1865 Male, age 51, unknown 15.5
2584 Male, age 75, left hemisphere 15.0
2725 Female, age 75, unknown 14.6
1821 Female, age 72, unknown 13.8
2769 Male, age 72, unknown 13.8
2785 Male, age 18, unknown 13.7
2588 Male, age 74, left hemisphere 11.6
Substantia nigra
nTPM: 16.7
1941 Male, age 53, unknown 28.0
2409 Female, age 72, unknown 22.6
1916 Female, age 42, unknown 19.7
1889 Female, age 72, unknown 15.6
1851 Male, age 51, unknown 15.1
2699 Male, age 18, unknown 14.8
2665 Male, age 74, both hemispheres 13.9
2590 Female, age 75, unknown 13.3
2241 Male, age 72, unknown 12.9
2583 Male, age 75, right hemisphere 10.6
Superior colliculus
nTPM: 16.5
2587 Male, age 74, left hemisphere 22.8
1839 Male, age 51, unknown 22.2
1895 Male, age 76, right hemisphere 21.2
1913 Female, age 42, unknown 18.6
1995 Male, age 72, unknown 16.2
2261 Male, age 18, unknown 15.1
2668 Female, age 75, unknown 13.5
2087 Female, age 72, unknown 13.3
1796 Male, age 53, unknown 12.1
2664 Male, age 75, both hemispheres 10.0
Ventral tegmental area
nTPM: 25.5
2218 Male, age 76, both hemispheres 29.6
1942 Male, age 51, unknown 28.7
2223 Female, age 72, unknown 27.9
2410 Female, age 72, unknown 26.0
2021 Male, age 53, unknown 21.0
1915 Female, age 42, unknown 20.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 15.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 15.4
Samples: 139

Max nTPM: 23.7
Min nTPM: 9.8
Std nTPM: 2.7
Median nTPM: 15.3
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 23.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 23.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 22.9
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 22.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 22.1
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 21.9
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 20.9
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 20.7
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 19.5
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 19.3
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 19.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 27.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 27.2
FF:10158-103A5 76 years, female 27.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 7.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 6.7
Samples: 4

Max nTPM: 8.1
Min nTPM: 5.1
Sample A Female 8.1
Sample B Female 6.9
Sample C Male 6.5
Sample D Male 5.1
Midbrain
nTPM: 6.6
Samples: 4

Max nTPM: 6.9
Min nTPM: 6.3
Sample A Female 6.3
Sample B Female 6.6
Sample C Male 6.6
Sample D Male 6.9
Periaqueductal gray
nTPM: 6.1
Samples: 3

Max nTPM: 6.5
Min nTPM: 5.5
Sample B Female 5.5
Sample C Male 6.2
Sample D Male 6.5
Superior colliculi
nTPM: 7.4
Samples: 4

Max nTPM: 7.8
Min nTPM: 7.0
Sample A Female 7.8
Sample B Female 7.5
Sample C Male 7.2
Sample D Male 7.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 5.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 5.1
Samples: 4

Max nTPM: 5.4
Min nTPM: 4.7
Sample A Male 5.4
Sample B Male 5.4
Sample C Female 4.7
Sample D Female 4.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
69608893 Antisense, RP_050426_04_D09, Mouse strain C57BL/6J (56 days, male) 0.0

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